RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CCL14Q16627 93 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 QRICH1Q2TAL8 776 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 BRDTQ58F21 947 aaPredicted RBP9.28□□□□□ -0.92
USP40-216ENST00000485943 ARHGEF16Q5VV41 709 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 OLFML2BQ68BL8 750 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 BTNL9Q6UXG8 535 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 RASGRP2Q7LDG7 609 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 PACS2Q86VP3 889 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 U2AF1L4Q8WU68 220 aaKnown RBP9.28□□□□□ -0.92
USP40-216ENST00000485943 CCDC12Q8WUD4 166 aaPredicted RBP9.28□□□□□ -0.92
USP40-216ENST00000485943 DPF3Q92784 378 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 BRF1Q92994 677 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 TINF2Q9BSI4 451 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 ZMYND15Q9H091 742 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 CPVLQ9H3G5 476 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 LY9Q9HBG7 655 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 PDRG1Q9NUG6 133 aa9.28□□□□□ -0.92
USP40-216ENST00000485943 DIS3Q9Y2L1 958 aaKnown RBP9.28□□□□□ -0.92
USP40-216ENST00000485943 PNMA6FA0A0J9YX94 578 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 SMAPO00193 183 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 ZEB2O60315 1214 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 CDKL5O76039 1030 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 FARP2O94887 1054 aaPredicted RBP9.27□□□□□ -0.93
USP40-216ENST00000485943 GJB1P08034 283 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 SNHG28P0DPA3 235 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 AKR1A1P14550 325 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 RPS6KB1P23443 525 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 PSEN2P49810 448 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 CACNB2Q08289 660 aaPredicted RBP9.27□□□□□ -0.93
USP40-216ENST00000485943 ADCK5Q3MIX3 580 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 TSGA10IPQ3SY00 556 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 RUFY3Q7L099 469 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 HEATR3Q7Z4Q2 680 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 MSL3Q8N5Y2 521 aaKnown RBP9.27□□□□□ -0.93
USP40-216ENST00000485943 FANCBQ8NB91 859 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 ARRDC4Q8NCT1 418 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 NPLOC4Q8TAT6 608 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 IGDCC4Q8TDY8 1250 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 MAML3Q96JK9 1138 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 PIGSQ96S52 555 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 MAP3K14Q99558 947 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 A1CFQ9NQ94 594 aaKnown RBP9.27□□□□□ -0.93
USP40-216ENST00000485943 POLR3EQ9NVU0 708 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 MAD2L2Q9UI95 211 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 GJD2Q9UKL4 321 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 FAM184BQ9ULE4 1060 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 RIPK3Q9Y572 518 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 RLFQ13129 1914 aa9.27□□□□□ -0.93
USP40-216ENST00000485943 BAZ2BQ9UIF8 2168 aaKnown RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 GCOM1H8Y6P7 765 aaPredicted RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 COBLO75128 1261 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 SGPL1O95470 568 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 HOXC6P09630 235 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 POLR2MP0CAP2 368 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 XBP1P17861 261 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 EN2P19622 333 aaPredicted RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 NOVP48745 357 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 NAPAP54920 295 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 ANTXR2P58335 489 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 APOBRQ0VD83 1088 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 STK3Q13188 491 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 BAATQ14032 418 aaPredicted RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 MUM1L1Q5H9M0 696 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 ANO1Q5XXA6 986 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 APOA5Q6Q788 366 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 ARMCX2Q7L311 632 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 EEPD1Q7L9B9 569 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 NECAB2Q7Z6G3 386 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 RNF180Q86T96 592 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 STAG2Q8N3U4 1231 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 REPS2Q8NFH8 660 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 USP26Q9BXU7 913 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 UPF3BQ9BZI7 483 aaKnown RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 AP5M1Q9H0R1 490 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 SLKQ9H2G2 1235 aaPredicted RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 ABHD16BQ9H3Z7 469 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 JMJD4Q9H9V9 463 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 PRKAG2Q9UGJ0 569 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 DDX20Q9UHI6 824 aaKnown RBP9.26□□□□□ -0.93
USP40-216ENST00000485943 TCEAL9Q9UHQ7 104 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 TAF6LQ9Y6J9 622 aa9.26□□□□□ -0.93
USP40-216ENST00000485943 KIAA0100Q14667 2235 aaKnown RBP9.25□□□□□ -0.93
USP40-216ENST00000485943 PALM3A6NDB9 673 aaPredicted RBP9.25□□□□□ -0.93
USP40-216ENST00000485943 SPDYE3A6NKU9 549 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 NFIBO00712 420 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 SEPT4O43236 478 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 ST18O60284 1047 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 CPA1P15085 419 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 GJA8P48165 433 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 ANAPC15P60006 121 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 RPS6P62753 249 aaKnown RBP9.25□□□□□ -0.93
USP40-216ENST00000485943 CCT2P78371 535 aaKnown RBP9.25□□□□□ -0.93
USP40-216ENST00000485943 SGMS1Q86VZ5 419 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 FCHSD1Q86WN1 690 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 DNERQ8NFT8 737 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 NSUN6Q8TEA1 469 aaKnown RBP9.25□□□□□ -0.93
USP40-216ENST00000485943 SPZ1Q9BXG8 430 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 GLT8D2Q9H1C3 349 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 XPNPEP3Q9NQH7 507 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms