RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 SLFN13Q68D06 897 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 CC2D2BQ6DHV5 1058 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 DPP9Q86TI2 863 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 PALMDQ9NP74 551 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 SSH2Q76I76 1423 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 ATF2P15336 505 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 DALRD3Q5D0E6 543 aaKnown RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 KLHL29Q96CT2 875 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 SAAL1Q96ER3 474 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 PACSIN2Q9UNF0 486 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 BSPRYQ5W0U4 402 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 ABCC4O15439 1325 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 HSPA8P11142 646 aaKnown RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 DYNC1I2Q13409 638 aaKnown RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 RNF169Q8NCN4 708 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 SSH3Q8TE77 659 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 CSRNP1Q96S65 589 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 POLR3CQ9BUI4 534 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 TM6SF1Q9BZW5 370 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 TTLL3Q9Y4R7 772 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 TMEM232C9JQI7 657 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 KCNQ3O43525 872 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 ATP6V1E1P36543 226 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 SLMAPQ14BN4 828 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 GPBP1Q86WP2 473 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 LRRC8AQ8IWT6 810 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 ZNF274Q96GC6 653 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 MED10Q9BTT4 135 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 METP08581 1390 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 SHROOM2Q13796 1616 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 N4BP1O75113 896 aaKnown RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 FOSP01100 380 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-224ENST00000478916 KRT81Q14533 505 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 XKR9Q5GH70 373 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 ARHGEF25Q86VW2 580 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 GREM2Q9H772 168 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 ZMYM6O95789 1325 aa9.6□□□□□ -0.87
SYNE1-224ENST00000478916 PDE8BO95263 885 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 LMNAP02545 664 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 KRT10P13645 584 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 DMP1Q13316 513 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 TFDP1Q14186 410 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 NELFCDQ8IXH7 590 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 SDR42E1Q8WUS8 393 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 HDAC11Q96DB2 347 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 DPH5Q9H2P9 285 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 KLRF2D3W0D1 207 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 UBE3CQ15386 1083 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 C16orf87Q6PH81 154 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 CCHCR1Q8TD31 782 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 DDX25Q9UHL0 483 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 SAMD9LQ8IVG5 1584 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 PASKQ96RG2 1323 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 GPC4O75487 556 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 STAT1P42224 750 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 ETF1P62495 437 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 NEK8Q86SG6 692 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 KIFC3Q9BVG8 833 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 LSM14BQ9BX40 385 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 ASAP1Q9ULH1 1129 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 TNKSO95271 1327 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 OCA2Q04671 838 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 SLC17A8Q8NDX2 589 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 U2AF1L4Q8WU68 220 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 PRKAG2Q9UGJ0 569 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 PFDN6O15212 129 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 IFNB1P01574 187 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 EEF1GP26641 437 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 GPATCH4Q5T3I0 446 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 RTKN2Q8IZC4 609 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 MIS12Q9H081 205 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 AP5M1Q9H0R1 490 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 ADD3Q9UEY8 706 aaKnown RBP9.59□□□□□ -0.87
SYNE1-224ENST00000478916 ZBBXA8MT70 800 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 SNX1Q13596 522 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 E2F4Q16254 413 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 NME8Q8N427 588 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 CEP70Q8NHQ1 597 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 CDKL2Q92772 493 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 GPR108Q9NPR9 543 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 LMBRD1Q9NUN5 540 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 USP6P35125 1406 aa9.59□□□□□ -0.87
SYNE1-224ENST00000478916 hCG_1642624A0A1W2PR95 340 aa9.59□□□□□ -0.88
SYNE1-224ENST00000478916 STX1BP61266 288 aa9.59□□□□□ -0.88
SYNE1-224ENST00000478916 KCTD16Q68DU8 428 aa9.59□□□□□ -0.88
SYNE1-224ENST00000478916 CNOT10Q9H9A5 744 aaKnown RBP9.59□□□□□ -0.88
SYNE1-224ENST00000478916 FAM207AQ9NSI2 230 aaPredicted RBP9.59□□□□□ -0.88
SYNE1-224ENST00000478916 K7ENM7 598 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 SCG2P13521 617 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 CASP2P42575 452 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 POLGP54098 1239 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 ASPRV1Q53RT3 343 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 PLA2G4DQ86XP0 818 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 TRIML2Q8N7C3 387 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 FANCBQ8NB91 859 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 HAUS4Q9H6D7 363 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 KRT82Q9NSB4 513 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 NPR1P16066 1061 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 HADHQ16836 314 aaKnown RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 SEPT12Q8IYM1 358 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms