RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 FBXO11Q86XK2 927 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 PBX4Q9BYU1 374 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 WNT8AQ9H1J5 351 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 IL25Q9H293 177 aa23.06■■□□□ 1.28
COL9A3-210ENST00000472880 GRXCR1A8MXD5 290 aa23.05■■□□□ 1.28
COL9A3-210ENST00000472880 KPNA6O60684 536 aa23.05■■□□□ 1.28
COL9A3-210ENST00000472880 PBX2P40425 430 aa23.05■■□□□ 1.28
COL9A3-210ENST00000472880 COPS5Q92905 334 aa23.05■■□□□ 1.28
COL9A3-210ENST00000472880 TRMT13Q9NUP7 481 aaKnown RBP23.05■■□□□ 1.28
COL9A3-210ENST00000472880 MRPL11Q9Y3B7 192 aaKnown RBP23.05■■□□□ 1.28
COL9A3-210ENST00000472880 MYH6P13533 1939 aa23.05■■□□□ 1.28
COL9A3-210ENST00000472880 A6NJR5 290 aa23.04■■□□□ 1.28
COL9A3-210ENST00000472880 GSPT1P15170 499 aaKnown RBP23.04■■□□□ 1.28
COL9A3-210ENST00000472880 PDE4AP27815 886 aa23.04■■□□□ 1.28
COL9A3-210ENST00000472880 OTOP2Q7RTS6 562 aa23.04■■□□□ 1.28
COL9A3-210ENST00000472880 RPUSD2Q8IZ73 545 aaKnown RBP23.04■■□□□ 1.28
COL9A3-210ENST00000472880 SYTL5Q8TDW5 730 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-210ENST00000472880 NSUN6Q8TEA1 469 aaKnown RBP23.04■■□□□ 1.28
COL9A3-210ENST00000472880 JMJD4Q9H9V9 463 aa23.04■■□□□ 1.28
COL9A3-210ENST00000472880 VAT1LQ9HCJ6 419 aa23.04■■□□□ 1.28
COL9A3-210ENST00000472880 CXXC1Q9P0U4 656 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-210ENST00000472880 MSRAQ9UJ68 235 aa23.04■■□□□ 1.28
COL9A3-210ENST00000472880 SUPT16HQ9Y5B9 1047 aaKnown RBP23.04■■□□□ 1.28
COL9A3-210ENST00000472880 UNC80Q8N2C7 3258 aa23.04■■□□□ 1.28
COL9A3-210ENST00000472880 SCN10AQ9Y5Y9 1956 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 CDH23Q9H251 3354 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 CYP2C9P11712 490 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 TRDNQ13061 729 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 RAB30Q15771 203 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 NBPF20Q3BBV1 942 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 RUFY2Q8WXA3 655 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 TBC1D5Q92609 795 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 SCLYQ96I15 445 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 TAAR1Q96RJ0 339 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 RMDN3Q96TC7 470 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 COL20A1Q9P218 1284 aa23.03■■□□□ 1.28
COL9A3-210ENST00000472880 ARIH2O95376 493 aa23.02■■□□□ 1.28
COL9A3-210ENST00000472880 NFRKBQ6P4R8 1299 aa23.02■■□□□ 1.28
COL9A3-210ENST00000472880 SEPT14Q6ZU15 432 aa23.02■■□□□ 1.28
COL9A3-210ENST00000472880 COL25A1Q9BXS0 654 aaPredicted RBP23.02■■□□□ 1.28
COL9A3-210ENST00000472880 A0A0C4DFX4 3053 aa23.02■■□□□ 1.28
COL9A3-210ENST00000472880 SEC23AQ15436 765 aa23.01■■□□□ 1.27
COL9A3-210ENST00000472880 STXBP2Q15833 593 aa23.01■■□□□ 1.27
COL9A3-210ENST00000472880 ARHGEF16Q5VV41 709 aa23.01■■□□□ 1.27
COL9A3-210ENST00000472880 CYB5R4Q7L1T6 521 aa23.01■■□□□ 1.27
COL9A3-210ENST00000472880 STAG2Q8N3U4 1231 aa23.01■■□□□ 1.27
COL9A3-210ENST00000472880 IWS1Q96ST2 819 aa23.01■■□□□ 1.27
COL9A3-210ENST00000472880 GAS2L1Q99501 681 aaPredicted RBP23.01■■□□□ 1.27
COL9A3-210ENST00000472880 AMNQ9BXJ7 453 aa23.01■■□□□ 1.27
COL9A3-210ENST00000472880 EYSQ5T1H1 3165 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 ZBBXA8MT70 800 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 KLRF2D3W0D1 207 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 CFBP00751 764 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 GH1P01241 217 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 PFKMP08237 780 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 EIF2AK2P19525 551 aaKnown RBP23■■□□□ 1.27
COL9A3-210ENST00000472880 CHMP4BP1P59074 171 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 PTPN11Q06124 597 aaPredicted RBP23■■□□□ 1.27
COL9A3-210ENST00000472880 CCDC62Q6P9F0 684 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 NOD1Q9Y239 953 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 SLC4A7Q9Y6M7 1214 aa23■■□□□ 1.27
COL9A3-210ENST00000472880 U3KPZ7 1027 aaPredicted RBP23■■□□□ 1.27
COL9A3-210ENST00000472880 TANC1Q9C0D5 1861 aa22.99■■□□□ 1.27
COL9A3-210ENST00000472880 LY6KQ17RY6 165 aa22.99■■□□□ 1.27
COL9A3-210ENST00000472880 PPP1R13LQ8WUF5 828 aa22.99■■□□□ 1.27
COL9A3-210ENST00000472880 AFG1LQ8WV93 481 aa22.99■■□□□ 1.27
COL9A3-210ENST00000472880 GBF1Q92538 1859 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 KIAA1217Q5T5P2 1943 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 ERICH2A1L162 156 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 MMP3P08254 477 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 CHST3Q7LGC8 479 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 DEFB128Q7Z7B8 93 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 RALYLQ86SE5 291 aaKnown RBP22.98■■□□□ 1.27
COL9A3-210ENST00000472880 NKX2-4Q9H2Z4 354 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 PRDM12Q9H4Q4 367 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 PXMP2Q9NR77 195 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 MAD2L2Q9UI95 211 aa22.98■■□□□ 1.27
COL9A3-210ENST00000472880 ZBTB5O15062 677 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 CYP21A2P08686 494 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 CHMLP26374 656 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 RFC2P35250 354 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 HSD17B4P51659 736 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 ARHGAP1Q07960 439 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 RETREG2Q8NC44 543 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 SLC28A3Q9HAS3 691 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 MRVI1Q9Y6F6 885 aa22.97■■□□□ 1.27
COL9A3-210ENST00000472880 CUL9Q8IWT3 2517 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 PALM3A6NDB9 673 aaPredicted RBP22.96■■□□□ 1.27
COL9A3-210ENST00000472880 PITPNM1O00562 1244 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 IFIT3O14879 490 aaKnown RBP22.96■■□□□ 1.27
COL9A3-210ENST00000472880 EIF3JO75822 258 aaKnown RBP22.96■■□□□ 1.27
COL9A3-210ENST00000472880 NR3C2P08235 984 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 ACTN1P12814 892 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 PTH1RQ03431 593 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 BFSP2Q13515 415 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 SART3Q15020 963 aaKnown RBP22.96■■□□□ 1.27
COL9A3-210ENST00000472880 HOMER1Q86YM7 354 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 MTMR8Q96EF0 704 aa22.96■■□□□ 1.27
COL9A3-210ENST00000472880 YBX2Q9Y2T7 364 aaKnown RBP22.96■■□□□ 1.27
COL9A3-210ENST00000472880 PCDHA1Q9Y5I3 950 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms