RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 TAAR1Q96RJ0 339 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 SPC25Q9HBM1 224 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 XPNPEP3Q9NQH7 507 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 BARHL2Q9NY43 387 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 ASTN1O14525 1302 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 DUSP11O75319 330 aaKnown RBP16.34■□□□□ 0.21
BRCA1-211ENST00000472490 HOXA13P31271 388 aaPredicted RBP16.34■□□□□ 0.21
BRCA1-211ENST00000472490 NAPAP54920 295 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 TNFAIP2Q03169 654 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 SSRP1Q08945 709 aaKnown RBP16.34■□□□□ 0.21
BRCA1-211ENST00000472490 STK3Q13188 491 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 WWC2Q6AWC2 1192 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 NOL8Q76FK4 1167 aaKnown RBP16.34■□□□□ 0.21
BRCA1-211ENST00000472490 NECAB2Q7Z6G3 386 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 RNF180Q86T96 592 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 FCHSD1Q86WN1 690 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 LARP6Q9BRS8 491 aaKnown RBP16.34■□□□□ 0.21
BRCA1-211ENST00000472490 KATNBL1Q9H079 304 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 NCOA5Q9HCD5 579 aaKnown RBP16.34■□□□□ 0.21
BRCA1-211ENST00000472490 PXMP2Q9NR77 195 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 TPCN1Q9ULQ1 816 aa16.34■□□□□ 0.21
BRCA1-211ENST00000472490 CENPFP49454 3210 aa16.33■□□□□ 0.21
BRCA1-211ENST00000472490 DNM1LO00429 736 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 PFKFB2O60825 505 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 EIF3JO75822 258 aaKnown RBP16.33■□□□□ 0.2
BRCA1-211ENST00000472490 EIF2AK2P19525 551 aaKnown RBP16.33■□□□□ 0.2
BRCA1-211ENST00000472490 NTRK3Q16288 839 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 EEPD1Q7L9B9 569 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 FBXO16Q8IX29 292 aaPredicted RBP16.33■□□□□ 0.2
BRCA1-211ENST00000472490 GPKOWQ92917 476 aaPredicted RBP eCLIP16.33■□□□□ 0.2
BRCA1-211ENST00000472490 PHKBQ93100 1093 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 HTATIP2Q9BUP3 242 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 SLC26A6Q9BXS9 759 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 EHMT1Q9H9B1 1298 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 COL20A1Q9P218 1284 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 Q9Y3F1 56 aa16.33■□□□□ 0.2
BRCA1-211ENST00000472490 SPDYE3A6NKU9 549 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 KBTBD13C9JR72 458 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 STAM2O75886 525 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 NR3C2P08235 984 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 RABEP1Q15276 862 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 ANO1Q5XXA6 986 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 MCTP2Q6DN12 878 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 RBBP6Q7Z6E9 1792 aaKnown RBP16.32■□□□□ 0.2
BRCA1-211ENST00000472490 CCDC148Q8NFR7 591 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 SCFD2Q8WU76 684 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 PDCD2LQ9BRP1 358 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 LIMCH1Q9UPQ0 1083 aa16.32■□□□□ 0.2
BRCA1-211ENST00000472490 SMCO2A6NFE2 343 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 STXBP3O00186 592 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 MEIS2O14770 477 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 NKRFO15226 690 aaKnown RBP eCLIP16.31■□□□□ 0.2
BRCA1-211ENST00000472490 ST18O60284 1047 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 DEXIO95424 95 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 FOSP01100 380 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-211ENST00000472490 GNA11P29992 359 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 CCND2P30279 289 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 ADCYAP1R1P41586 468 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 ADCY7P51828 1080 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 SCRN1Q12765 414 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 TTLL4Q14679 1199 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 PGM5Q15124 567 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 TAPT1Q6NXT6 567 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 XRRA1Q6P2D8 792 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 USP17L6PQ6QN14 398 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 UBE2Q1Q7Z7E8 422 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 FAM177A1Q8N128 213 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-211ENST00000472490 BACH2Q9BYV9 841 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 WDR11Q9BZH6 1224 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 AP5M1Q9H0R1 490 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 C11orf49Q9H6J7 331 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 C6orf50Q9HD87 102 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 RIC8AQ9NPQ8 531 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 SH3GLB2Q9NR46 395 aa16.31■□□□□ 0.2
BRCA1-211ENST00000472490 RBM47A0AV96 593 aaKnown RBP16.3■□□□□ 0.2
BRCA1-211ENST00000472490 ESYT2A0FGR8 921 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 XBP1P17861 261 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 DUSP28Q4G0W2 176 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 KCNV1Q6PIU1 500 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 VSIG10LQ86VR7 867 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 PCSK9Q8NBP7 692 aaKnown RBP16.3■□□□□ 0.2
BRCA1-211ENST00000472490 BICD2Q8TD16 824 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 WASF1Q92558 559 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 PAWRQ96IZ0 340 aaKnown RBP16.3■□□□□ 0.2
BRCA1-211ENST00000472490 KIF2CQ99661 725 aa16.3■□□□□ 0.2
BRCA1-211ENST00000472490 PLXNA1Q9UIW2 1896 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 FRMPD4Q14CM0 1322 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 SYNRGQ9UMZ2 1314 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 ZEB2O60315 1214 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 PGK1P00558 417 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 C6orf222P0C671 652 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-211ENST00000472490 MYCLP12524 364 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-211ENST00000472490 GJA9P57773 515 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 AP3B2Q13367 1082 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 LRRC41Q15345 812 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 PKN1Q16512 942 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 ME3Q16798 604 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 GNPTABQ3T906 1256 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 GJC2Q5T442 439 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-211ENST00000472490 TLK2Q86UE8 772 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms