RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 SMCO2A6NFE2 343 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 SPDYE3A6NKU9 549 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 ACVR2BQ13705 512 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 PKN1Q16512 942 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 MORC4Q8TE76 937 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 TAAR1Q96RJ0 339 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 LLPHQ9BRT6 129 aaKnown RBP22.73■■□□□ 1.23
COL9A3-204ENST00000463487 VTA1Q9NP79 307 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 PXMP2Q9NR77 195 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 HTTP42858 3142 aa22.73■■□□□ 1.23
COL9A3-204ENST00000463487 SEPT4O43236 478 aa22.72■■□□□ 1.23
COL9A3-204ENST00000463487 PPFIA3O75145 1194 aa22.72■■□□□ 1.23
COL9A3-204ENST00000463487 AKR1A1P14550 325 aa22.72■■□□□ 1.23
COL9A3-204ENST00000463487 CCND3P30281 292 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-204ENST00000463487 PURBQ96QR8 312 aaKnown RBP22.72■■□□□ 1.23
COL9A3-204ENST00000463487 COL20A1Q9P218 1284 aa22.72■■□□□ 1.23
COL9A3-204ENST00000463487 ORC3Q9UBD5 711 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-204ENST00000463487 DDX20Q9UHI6 824 aaKnown RBP22.72■■□□□ 1.23
COL9A3-204ENST00000463487 FAM184BQ9ULE4 1060 aa22.72■■□□□ 1.23
COL9A3-204ENST00000463487 ASTN1O14525 1302 aa22.72■■□□□ 1.23
COL9A3-204ENST00000463487 LCTP09848 1927 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 SNAI1O95863 264 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-204ENST00000463487 FOSP01100 380 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-204ENST00000463487 EIF2AK2P19525 551 aaKnown RBP22.71■■□□□ 1.23
COL9A3-204ENST00000463487 EDNRBP24530 442 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 NLRP5P59047 1200 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 STXBP2Q15833 593 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 USP17L6PQ6QN14 398 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 CCDC83Q8IWF9 413 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 DEFB118Q96PH6 123 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 ZMYND12Q9H0C1 365 aa22.71■■□□□ 1.23
COL9A3-204ENST00000463487 MEIS2O14770 477 aa22.7■■□□□ 1.22
COL9A3-204ENST00000463487 CCND2P30279 289 aa22.7■■□□□ 1.22
COL9A3-204ENST00000463487 HMGN5P82970 282 aaKnown RBP22.7■■□□□ 1.22
COL9A3-204ENST00000463487 AP3B2Q13367 1082 aa22.7■■□□□ 1.22
COL9A3-204ENST00000463487 PRAMEF19Q5SWL8 479 aa22.7■■□□□ 1.22
COL9A3-204ENST00000463487 VPS54Q9P1Q0 977 aa22.7■■□□□ 1.22
COL9A3-204ENST00000463487 NR3C2P08235 984 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 RARBP10826 455 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 GJA8P48165 433 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 GALNT17Q6IS24 598 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 TYW1BQ6NUM6 668 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 EEPD1Q7L9B9 569 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 NSUN7Q8NE18 718 aaKnown RBP22.69■■□□□ 1.22
COL9A3-204ENST00000463487 U2AF1L4Q8WU68 220 aaKnown RBP22.69■■□□□ 1.22
COL9A3-204ENST00000463487 PDCD2LQ9BRP1 358 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 KIF3AQ9Y496 699 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 MCM3APO60318 1980 aa22.69■■□□□ 1.22
COL9A3-204ENST00000463487 STAM2O75886 525 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 SGPL1O95470 568 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 CTDNEP1O95476 244 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 TFRCP02786 760 aaKnown RBP22.68■■□□□ 1.22
COL9A3-204ENST00000463487 ZNF865P0CJ78 1059 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-204ENST00000463487 TRIM29Q14134 588 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 PGM5Q15124 567 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 UBE2SQ16763 222 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 XRRA1Q6P2D8 792 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 FBXO16Q8IX29 292 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-204ENST00000463487 REXO1Q8N1G1 1221 aaKnown RBP22.68■■□□□ 1.22
COL9A3-204ENST00000463487 TRPV1Q8NER1 839 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 ALG1Q9BT22 464 aa22.68■■□□□ 1.22
COL9A3-204ENST00000463487 FRMPD4Q14CM0 1322 aa22.67■■□□□ 1.22
COL9A3-204ENST00000463487 EIF3JO75822 258 aaKnown RBP22.67■■□□□ 1.22
COL9A3-204ENST00000463487 MYCLP12524 364 aaPredicted RBP22.67■■□□□ 1.22
COL9A3-204ENST00000463487 CCDC144BQ3MJ40 725 aa22.67■■□□□ 1.22
COL9A3-204ENST00000463487 IQSEC1Q6DN90 963 aa22.67■■□□□ 1.22
COL9A3-204ENST00000463487 TMX3Q96JJ7 454 aa22.67■■□□□ 1.22
COL9A3-204ENST00000463487 SPC25Q9HBM1 224 aa22.67■■□□□ 1.22
COL9A3-204ENST00000463487 PCDHA6Q9UN73 950 aa22.67■■□□□ 1.22
COL9A3-204ENST00000463487 PCDHA8Q9Y5H6 950 aa22.67■■□□□ 1.22
COL9A3-204ENST00000463487 SOX10P56693 466 aa22.66■■□□□ 1.22
COL9A3-204ENST00000463487 GNPTABQ3T906 1256 aa22.66■■□□□ 1.22
COL9A3-204ENST00000463487 FAM184AQ8NB25 1140 aa22.66■■□□□ 1.22
COL9A3-204ENST00000463487 SCFD2Q8WU76 684 aa22.66■■□□□ 1.22
COL9A3-204ENST00000463487 KATNBL1Q9H079 304 aa22.66■■□□□ 1.22
COL9A3-204ENST00000463487 BRMS1Q9HCU9 246 aa22.66■■□□□ 1.22
COL9A3-204ENST00000463487 TNFAIP2Q03169 654 aa22.65■■□□□ 1.22
COL9A3-204ENST00000463487 PCNX4Q63HM2 1172 aa22.65■■□□□ 1.22
COL9A3-204ENST00000463487 ANKLE1Q8NAG6 615 aa22.65■■□□□ 1.22
COL9A3-204ENST00000463487 ARRDC4Q8NCT1 418 aa22.65■■□□□ 1.22
COL9A3-204ENST00000463487 CRISPLD2Q9H0B8 497 aa22.65■■□□□ 1.22
COL9A3-204ENST00000463487 PCDHA4Q9UN74 947 aa22.65■■□□□ 1.22
COL9A3-204ENST00000463487 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-204ENST00000463487 LRRC37A2A6NM11 1700 aa22.65■■□□□ 1.22
COL9A3-204ENST00000463487 POTEFA5A3E0 1075 aa22.64■■□□□ 1.21
COL9A3-204ENST00000463487 JAK2O60674 1132 aa22.64■■□□□ 1.21
COL9A3-204ENST00000463487 DUSP11O75319 330 aaKnown RBP22.64■■□□□ 1.21
COL9A3-204ENST00000463487 CLK2P49760 499 aaKnown RBP22.64■■□□□ 1.21
COL9A3-204ENST00000463487 TTLL4Q14679 1199 aa22.64■■□□□ 1.21
COL9A3-204ENST00000463487 KCNV1Q6PIU1 500 aa22.64■■□□□ 1.21
COL9A3-204ENST00000463487 VSIG10LQ86VR7 867 aa22.64■■□□□ 1.21
COL9A3-204ENST00000463487 DAGLBQ8NCG7 672 aa22.64■■□□□ 1.21
COL9A3-204ENST00000463487 XPNPEP3Q9NQH7 507 aa22.64■■□□□ 1.21
COL9A3-204ENST00000463487 CENPFP49454 3210 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 NKRFO15226 690 aaKnown RBP eCLIP22.63■■□□□ 1.21
COL9A3-204ENST00000463487 CD2BP2O95400 341 aaKnown RBP22.63■■□□□ 1.21
COL9A3-204ENST00000463487 ST3GAL1Q11201 340 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 LHX8Q68G74 356 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 TAPT1Q6NXT6 567 aa22.63■■□□□ 1.21
COL9A3-204ENST00000463487 RNF180Q86T96 592 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms