RNA–Protein interactions for RNA: ENST00000461004.1

RTN4-212, Transcript of reticulon 4, humanhuman

TSL 3

Gene RTN4, Length 422 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-212ENST00000461004 EXOSC10Q01780 885 aaKnown RBP8.55□□□□□ -1.04
RTN4-212ENST00000461004 TMEM132BQ14DG7 1078 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 FAM110CQ1W6H9 321 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 CCDC96Q2M329 555 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 SLC35G1Q2M3R5 365 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 TMEM67Q5HYA8 995 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 LBX2Q6XYB7 198 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 OTOP1Q7RTM1 612 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 IQCA1Q86XH1 822 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 CYP4X1Q8N118 509 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 STAG2Q8N3U4 1231 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 REPS2Q8NFH8 660 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 GMCL1Q96IK5 515 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 NEK1Q96PY6 1258 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 SLF1Q9BQI6 1058 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 UBAC1Q9BSL1 405 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 MYL10Q9BUA6 226 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 UBA5Q9GZZ9 404 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 LY9Q9HBG7 655 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 HOXC10Q9NYD6 342 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 PPP1R9AQ9ULJ8 1098 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 GABRQQ9UN88 632 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 ADAMTS5Q9UNA0 930 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 TRIM17Q9Y577 477 aa8.55□□□□□ -1.04
RTN4-212ENST00000461004 VWA5AO00534 786 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 SH2B2O14492 632 aaPredicted RBP8.54□□□□□ -1.04
RTN4-212ENST00000461004 SNHG28P0DPA3 235 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 RXRAP19793 462 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 SCTRP47872 440 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 NR5A1Q13285 461 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 NNTQ13423 1086 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 PLS1Q14651 629 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 IFIT1BQ5T764 474 aaKnown RBP8.54□□□□□ -1.04
RTN4-212ENST00000461004 RNF20Q5VTR2 975 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 CTU1Q7Z7A3 348 aaKnown RBP8.54□□□□□ -1.04
RTN4-212ENST00000461004 GPRC5AQ8NFJ5 357 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 DCAF4Q8WV16 495 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 ERO1AQ96HE7 468 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 JAKMIP1Q96N16 626 aaKnown RBP8.54□□□□□ -1.04
RTN4-212ENST00000461004 KLF16Q9BXK1 252 aaPredicted RBP8.54□□□□□ -1.04
RTN4-212ENST00000461004 MOV10L1Q9BXT6 1211 aaKnown RBP8.54□□□□□ -1.04
RTN4-212ENST00000461004 MCOLN1Q9GZU1 580 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 KAT14Q9H8E8 782 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 RAVER2Q9HCJ3 691 aaKnown RBP8.54□□□□□ -1.04
RTN4-212ENST00000461004 FEM1BQ9UK73 627 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 PRR12Q9ULL5 1215 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 SYNPO2Q9UMS6 1093 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 RABGAP1Q9Y3P9 1069 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 PCDHB11Q9Y5F2 797 aa8.54□□□□□ -1.04
RTN4-212ENST00000461004 ZKSCAN1P17029 563 aaPredicted RBP8.53□□□□□ -1.04
RTN4-212ENST00000461004 MCM5P33992 734 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 PRKCZQ05513 592 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 ZNF543Q08ER8 600 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 IKQ13123 557 aaPredicted RBP8.53□□□□□ -1.04
RTN4-212ENST00000461004 WTAPQ15007 396 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 CCDC178Q5BJE1 867 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 PPP1R26Q5T8A7 1209 aaPredicted RBP8.53□□□□□ -1.04
RTN4-212ENST00000461004 CCDC174Q6PII3 467 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 DHX32Q7L7V1 743 aaKnown RBP8.53□□□□□ -1.04
RTN4-212ENST00000461004 NBPF11Q86T75 865 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 CCDC116Q8IYX3 515 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 CPXCR1Q8N123 301 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 SPATC1LQ9H0A9 340 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 GJD2Q9UKL4 321 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 ZNF214Q9UL59 606 aaPredicted RBP8.53□□□□□ -1.04
RTN4-212ENST00000461004 BRPF3Q9ULD4 1205 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 DOLKQ9UPQ8 538 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 RIPK3Q9Y572 518 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 ZNF536O15090 1300 aa8.53□□□□□ -1.04
RTN4-212ENST00000461004 PARP14Q460N5 1801 aa8.52□□□□□ -1.04
RTN4-212ENST00000461004 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.52□□□□□ -1.05
RTN4-212ENST00000461004 LILRA1O75019 489 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 ERCC3P19447 782 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 CASTP20810 708 aaKnown RBP8.52□□□□□ -1.05
RTN4-212ENST00000461004 NT5C2P49902 561 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 STAT2P52630 851 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 FCGRTP55899 365 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 TROAPQ12815 778 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 NCOA4Q13772 614 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 SYDE2Q5VT97 1194 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 WDR78Q5VTH9 848 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 BTNL9Q6UXG8 535 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 GPR142Q7Z601 462 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 NCAPG2Q86XI2 1143 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 CCDC144CPQ8IYA2 1237 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 CMTR1Q8N1G2 835 aaKnown RBP8.52□□□□□ -1.05
RTN4-212ENST00000461004 PRPF38AQ8NAV1 312 aaKnown RBP8.52□□□□□ -1.05
RTN4-212ENST00000461004 NUP133Q8WUM0 1156 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 HPS1Q92902 700 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 AGBL1Q96MI9 1066 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 UPF3BQ9BZI7 483 aaKnown RBP8.52□□□□□ -1.05
RTN4-212ENST00000461004 SLC38A10Q9HBR0 1119 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 VAT1LQ9HCJ6 419 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 SRRDQ9UH36 339 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 MAD2L2Q9UI95 211 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 PTPN22Q9Y2R2 807 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 PTCH2Q9Y6C5 1203 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 WASF2Q9Y6W5 498 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 SMCHD1A6NHR9 2005 aa8.52□□□□□ -1.05
RTN4-212ENST00000461004 MYPNQ86TC9 1320 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms