RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 HSD17B4P51659 736 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 HOMER1Q86YM7 354 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 FAM126BQ8IXS8 530 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 SLC43A3Q8NBI5 491 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 OR6J1Q8NGC5 347 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 LRCH3Q96II8 777 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 LY9Q9HBG7 655 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 SENP2Q9HC62 589 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 TBX21Q9UL17 535 aa20.73■□□□□ 0.91
MSH6-207ENST00000456246 PNMA6FA0A0J9YX94 578 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 KPNA6O60684 536 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 CFBP00751 764 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 SMARCA1P28370 1054 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 LIFRP42702 1097 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 GNAQP50148 359 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 STXBP2Q15833 593 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 ARHGEF16Q5VV41 709 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 ZNF654Q8IZM8 581 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 TAAR1Q96RJ0 339 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 LZTS2Q9BRK4 669 aa20.72■□□□□ 0.91
MSH6-207ENST00000456246 SH2B2O14492 632 aaPredicted RBP20.71■□□□□ 0.91
MSH6-207ENST00000456246 PPP1R11O60927 126 aaPredicted RBP20.71■□□□□ 0.91
MSH6-207ENST00000456246 TIMP1P01033 207 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 CALM1P0DP23 149 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 CALM2P0DP24 149 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 CALM3P0DP25 149 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 TXNP10599 105 aaKnown RBP20.71■□□□□ 0.91
MSH6-207ENST00000456246 ITGA7Q13683 1181 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 TBC1D5Q92609 795 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 PIGSQ96S52 555 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 SPZ1Q9BXG8 430 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 GPHNQ9NQX3 736 aaPredicted RBP20.71■□□□□ 0.91
MSH6-207ENST00000456246 COL20A1Q9P218 1284 aa20.71■□□□□ 0.91
MSH6-207ENST00000456246 CCDC69A6NI79 296 aa20.7■□□□□ 0.9
MSH6-207ENST00000456246 OPLAHO14841 1288 aa20.7■□□□□ 0.9
MSH6-207ENST00000456246 CYTH3O43739 400 aa20.7■□□□□ 0.9
MSH6-207ENST00000456246 FPGSQ05932 587 aa20.7■□□□□ 0.9
MSH6-207ENST00000456246 TMEM63BQ5T3F8 832 aa20.7■□□□□ 0.9
MSH6-207ENST00000456246 NFXL1Q6ZNB6 911 aa20.7■□□□□ 0.9
MSH6-207ENST00000456246 PXMP2Q9NR77 195 aa20.7■□□□□ 0.9
MSH6-207ENST00000456246 BAZ2BQ9UIF8 2168 aaKnown RBP20.69■□□□□ 0.9
MSH6-207ENST00000456246 A6NJR5 290 aa20.69■□□□□ 0.9
MSH6-207ENST00000456246 GCOM1H8Y6P7 765 aaPredicted RBP20.69■□□□□ 0.9
MSH6-207ENST00000456246 EIF3JO75822 258 aaKnown RBP20.69■□□□□ 0.9
MSH6-207ENST00000456246 CD4P01730 458 aa20.69■□□□□ 0.9
MSH6-207ENST00000456246 NEFLP07196 543 aa20.69■□□□□ 0.9
MSH6-207ENST00000456246 POLR2MP0CAP2 368 aa20.69■□□□□ 0.9
MSH6-207ENST00000456246 ITGB8P26012 769 aa20.69■□□□□ 0.9
MSH6-207ENST00000456246 PURAQ00577 322 aaKnown RBP20.69■□□□□ 0.9
MSH6-207ENST00000456246 SLC35G1Q2M3R5 365 aa20.69■□□□□ 0.9
MSH6-207ENST00000456246 MTG1Q9BT17 334 aaPredicted RBP20.69■□□□□ 0.9
MSH6-207ENST00000456246 NR3C2P08235 984 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 EIF2AK2P19525 551 aaKnown RBP20.68■□□□□ 0.9
MSH6-207ENST00000456246 PTGS1P23219 599 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 PPIGQ13427 754 aaKnown RBP eCLIP20.68■□□□□ 0.9
MSH6-207ENST00000456246 KRT32Q14532 448 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 SHHQ15465 462 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 MFSD5Q6N075 450 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 CCDC62Q6P9F0 684 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 SKAP1Q86WV1 359 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 RRP36Q96EU6 259 aaKnown RBP20.68■□□□□ 0.9
MSH6-207ENST00000456246 SEC63Q9UGP8 760 aaKnown RBP20.68■□□□□ 0.9
MSH6-207ENST00000456246 SLC12A7Q9Y666 1083 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 KIAA1217Q5T5P2 1943 aa20.68■□□□□ 0.9
MSH6-207ENST00000456246 GH1P01241 217 aa20.67■□□□□ 0.9
MSH6-207ENST00000456246 TSGA10IPQ3SY00 556 aa20.67■□□□□ 0.9
MSH6-207ENST00000456246 KCNV1Q6PIU1 500 aa20.67■□□□□ 0.9
MSH6-207ENST00000456246 SGMS1Q86VZ5 419 aa20.67■□□□□ 0.9
MSH6-207ENST00000456246 TMEM199Q8N511 208 aa20.67■□□□□ 0.9
MSH6-207ENST00000456246 PDCD2LQ9BRP1 358 aa20.67■□□□□ 0.9
MSH6-207ENST00000456246 ARIH2O95376 493 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 MYL3P08590 195 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 SUPT20HL2P0C7V6 817 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 C9orf50Q5SZB4 431 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 FAM109BQ6ICB4 259 aaPredicted RBP20.66■□□□□ 0.9
MSH6-207ENST00000456246 SEPT14Q6ZU15 432 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 NEK1Q96PY6 1258 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 GRIN2DO15399 1336 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 SCN10AQ9Y5Y9 1956 aa20.66■□□□□ 0.9
MSH6-207ENST00000456246 SYNE3Q6ZMZ3 975 aa20.65■□□□□ 0.9
MSH6-207ENST00000456246 DEFB123Q8N688 67 aa20.65■□□□□ 0.9
MSH6-207ENST00000456246 RNPC3Q96LT9 517 aaKnown RBP20.65■□□□□ 0.9
MSH6-207ENST00000456246 MYL10Q9BUA6 226 aa20.65■□□□□ 0.9
MSH6-207ENST00000456246 HIPK3Q9H422 1215 aa20.65■□□□□ 0.9
MSH6-207ENST00000456246 MRVI1Q9Y6F6 885 aa20.65■□□□□ 0.9
MSH6-207ENST00000456246 HMGB1P09429 215 aaKnown RBP20.64■□□□□ 0.89
MSH6-207ENST00000456246 CCND2P30279 289 aa20.64■□□□□ 0.89
MSH6-207ENST00000456246 HOXA13P31271 388 aaPredicted RBP20.64■□□□□ 0.89
MSH6-207ENST00000456246 PSMC6P62333 389 aa20.64■□□□□ 0.89
MSH6-207ENST00000456246 SMAD3P84022 425 aaKnown RBP20.64■□□□□ 0.89
MSH6-207ENST00000456246 PTPN11Q06124 597 aaPredicted RBP20.64■□□□□ 0.89
MSH6-207ENST00000456246 PGM5Q15124 567 aa20.64■□□□□ 0.89
MSH6-207ENST00000456246 NFRKBQ6P4R8 1299 aa20.64■□□□□ 0.89
MSH6-207ENST00000456246 VSIG10LQ86VR7 867 aa20.64■□□□□ 0.89
MSH6-207ENST00000456246 COPS5Q92905 334 aa20.64■□□□□ 0.89
MSH6-207ENST00000456246 EMID1Q96A84 441 aaPredicted RBP20.64■□□□□ 0.89
MSH6-207ENST00000456246 ALDH8A1Q9H2A2 487 aaPredicted RBP20.64■□□□□ 0.89
MSH6-207ENST00000456246 B4GALT4O60513 344 aa20.63■□□□□ 0.89
MSH6-207ENST00000456246 STAM2O75886 525 aa20.63■□□□□ 0.89
MSH6-207ENST00000456246 ARHGAP1Q07960 439 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms