RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 ANKRD33Q7Z3H0 272 aa17.98■□□□□ 0.47
LIMS1-210ENST00000449684 TRIM43Q96BQ3 446 aaPredicted RBP17.98■□□□□ 0.47
LIMS1-210ENST00000449684 MTMR8Q96EF0 704 aa17.98■□□□□ 0.47
LIMS1-210ENST00000449684 MAP3K14Q99558 947 aa17.98■□□□□ 0.47
LIMS1-210ENST00000449684 MYL10Q9BUA6 226 aa17.98■□□□□ 0.47
LIMS1-210ENST00000449684 SEC63Q9UGP8 760 aaKnown RBP17.98■□□□□ 0.47
LIMS1-210ENST00000449684 SLC12A7Q9Y666 1083 aa17.98■□□□□ 0.47
LIMS1-210ENST00000449684 RBM47A0AV96 593 aaKnown RBP17.97■□□□□ 0.47
LIMS1-210ENST00000449684 SH2B2O14492 632 aaPredicted RBP17.97■□□□□ 0.47
LIMS1-210ENST00000449684 CTAGE5O15320 804 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 MYL3P08590 195 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 CALM1P0DP23 149 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 CALM2P0DP24 149 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 CALM3P0DP25 149 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 EIF2AK2P19525 551 aaKnown RBP17.97■□□□□ 0.47
LIMS1-210ENST00000449684 PTGS1P23219 599 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 TMEM63BQ5T3F8 832 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 SEPT14Q6ZU15 432 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 SAMD3Q8N6K7 520 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 RRP36Q96EU6 259 aaKnown RBP17.97■□□□□ 0.47
LIMS1-210ENST00000449684 NEK1Q96PY6 1258 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 LZTS2Q9BRK4 669 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 POLR3EQ9NVU0 708 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 MAP3K20Q9NYL2 800 aaKnown RBP17.97■□□□□ 0.47
LIMS1-210ENST00000449684 LRRC37A2A6NM11 1700 aa17.97■□□□□ 0.47
LIMS1-210ENST00000449684 GCOM1H8Y6P7 765 aaPredicted RBP17.96■□□□□ 0.47
LIMS1-210ENST00000449684 KIAA0355O15063 1070 aa17.96■□□□□ 0.47
LIMS1-210ENST00000449684 PPP1R11O60927 126 aaPredicted RBP17.96■□□□□ 0.47
LIMS1-210ENST00000449684 POLR2MP0CAP2 368 aa17.96■□□□□ 0.47
LIMS1-210ENST00000449684 LIFRP42702 1097 aa17.96■□□□□ 0.47
LIMS1-210ENST00000449684 FAAP100Q0VG06 881 aa17.96■□□□□ 0.47
LIMS1-210ENST00000449684 KRT32Q14532 448 aa17.96■□□□□ 0.47
LIMS1-210ENST00000449684 LRRC2Q9BYS8 371 aa17.96■□□□□ 0.47
LIMS1-210ENST00000449684 COL20A1Q9P218 1284 aa17.96■□□□□ 0.47
LIMS1-210ENST00000449684 CYTH3O43739 400 aa17.95■□□□□ 0.46
LIMS1-210ENST00000449684 MYCLP12524 364 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-210ENST00000449684 HOXA13P31271 388 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-210ENST00000449684 CDK7P50613 346 aa17.95■□□□□ 0.46
LIMS1-210ENST00000449684 ITGA7Q13683 1181 aa17.95■□□□□ 0.46
LIMS1-210ENST00000449684 LRIT3Q3SXY7 679 aa17.95■□□□□ 0.46
LIMS1-210ENST00000449684 LRCH3Q96II8 777 aa17.95■□□□□ 0.46
LIMS1-210ENST00000449684 SEZ6LQ9BYH1 1024 aa17.95■□□□□ 0.46
LIMS1-210ENST00000449684 PXMP2Q9NR77 195 aa17.95■□□□□ 0.46
LIMS1-210ENST00000449684 BAZ2BQ9UIF8 2168 aaKnown RBP17.95■□□□□ 0.46
LIMS1-210ENST00000449684 EIF3JO75822 258 aaKnown RBP17.94■□□□□ 0.46
LIMS1-210ENST00000449684 NR3C2P08235 984 aa17.94■□□□□ 0.46
LIMS1-210ENST00000449684 RXRAP19793 462 aa17.94■□□□□ 0.46
LIMS1-210ENST00000449684 HSD17B4P51659 736 aa17.94■□□□□ 0.46
LIMS1-210ENST00000449684 FGD1P98174 961 aa17.94■□□□□ 0.46
LIMS1-210ENST00000449684 FCHSD1Q86WN1 690 aa17.94■□□□□ 0.46
LIMS1-210ENST00000449684 RAB11FIP4Q86YS3 637 aa17.94■□□□□ 0.46
LIMS1-210ENST00000449684 SPZ1Q9BXG8 430 aa17.94■□□□□ 0.46
LIMS1-210ENST00000449684 SOX1O00570 391 aaPredicted RBP17.93■□□□□ 0.46
LIMS1-210ENST00000449684 KPNA6O60684 536 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 SMARCA1P28370 1054 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 PSMC6P62333 389 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 FPGSQ05932 587 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 SLC35G1Q2M3R5 365 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 DHX32Q7L7V1 743 aaKnown RBP17.93■□□□□ 0.46
LIMS1-210ENST00000449684 MICU3Q86XE3 530 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 COPS5Q92905 334 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 CUL5Q93034 780 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 MTG1Q9BT17 334 aaPredicted RBP17.93■□□□□ 0.46
LIMS1-210ENST00000449684 MRVI1Q9Y6F6 885 aa17.93■□□□□ 0.46
LIMS1-210ENST00000449684 OPLAHO14841 1288 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 TIMP1P01033 207 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 GH1P01241 217 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 HMGB1P09429 215 aaKnown RBP17.92■□□□□ 0.46
LIMS1-210ENST00000449684 ITGB8P26012 769 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 CHMP4BP1P59074 171 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 LY6KQ17RY6 165 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 FAM47CQ5HY64 1035 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 FAM126BQ8IXS8 530 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 CCDC82Q8N4S0 544 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 SMARCC2Q8TAQ2 1214 aa17.92■□□□□ 0.46
LIMS1-210ENST00000449684 NAP1L2Q9ULW6 460 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-210ENST00000449684 REC8O95072 547 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 ARIH2O95376 493 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 PLEKHA8P1O95397 391 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 CENPBP07199 599 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-210ENST00000449684 CCND2P30279 289 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 PURAQ00577 322 aaKnown RBP17.91■□□□□ 0.46
LIMS1-210ENST00000449684 GHRHRQ02643 423 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 SHHQ15465 462 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 SGMS1Q86VZ5 419 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 CMTR1Q8N1G2 835 aaKnown RBP17.91■□□□□ 0.46
LIMS1-210ENST00000449684 TMEM199Q8N511 208 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 SRBD1Q8N5C6 995 aaKnown RBP17.91■□□□□ 0.46
LIMS1-210ENST00000449684 FANCBQ8NB91 859 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 TCEANC2Q96MN5 208 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 PDCD2LQ9BRP1 358 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 PPP1R12CQ9BZL4 782 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 TBX21Q9UL17 535 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 LTBP2Q14767 1821 aa17.91■□□□□ 0.46
LIMS1-210ENST00000449684 A6NJR5 290 aa17.9■□□□□ 0.46
LIMS1-210ENST00000449684 COL9A3Q14050 684 aaPredicted RBP17.9■□□□□ 0.46
LIMS1-210ENST00000449684 PGM5Q15124 567 aa17.9■□□□□ 0.46
LIMS1-210ENST00000449684 ADCK5Q3MIX3 580 aa17.9■□□□□ 0.46
LIMS1-210ENST00000449684 TSGA10IPQ3SY00 556 aa17.9■□□□□ 0.46
LIMS1-210ENST00000449684 MFSD5Q6N075 450 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms