RNA–Protein interactions for RNA: ENST00000426962.1

LINC01238-202, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2

Gene LINC01238, Length 430 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-202ENST00000426962 HOMER1Q86YM7 354 aa12.49□□□□□ -0.41
LINC01238-202ENST00000426962 CTCFLQ8NI51 663 aaPredicted RBP12.49□□□□□ -0.41
LINC01238-202ENST00000426962 SCFD2Q8WU76 684 aa12.49□□□□□ -0.41
LINC01238-202ENST00000426962 BADQ92934 168 aa12.49□□□□□ -0.41
LINC01238-202ENST00000426962 NEK1Q96PY6 1258 aa12.49□□□□□ -0.41
LINC01238-202ENST00000426962 LZTS2Q9BRK4 669 aa12.49□□□□□ -0.41
LINC01238-202ENST00000426962 SEZ6LQ9BYH1 1024 aa12.49□□□□□ -0.41
LINC01238-202ENST00000426962 GPHNQ9NQX3 736 aaPredicted RBP12.49□□□□□ -0.41
LINC01238-202ENST00000426962 COL20A1Q9P218 1284 aa12.49□□□□□ -0.41
LINC01238-202ENST00000426962 RANBP2P49792 3224 aaKnown RBP12.48□□□□□ -0.41
LINC01238-202ENST00000426962 OPLAHO14841 1288 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 CALM1P0DP23 149 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 CALM2P0DP24 149 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 CALM3P0DP25 149 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 RAG1P15918 1043 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 PTGS1P23219 599 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 GNAQP50148 359 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 CPT1AP50416 773 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 HSD17B4P51659 736 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 TTLL4Q14679 1199 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 PPP2R5BQ15173 497 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 CXCL17Q6UXB2 119 aa12.48□□□□□ -0.41
LINC01238-202ENST00000426962 GCOM1H8Y6P7 765 aaPredicted RBP12.47□□□□□ -0.41
LINC01238-202ENST00000426962 TLR3O15455 904 aaKnown RBP12.47□□□□□ -0.41
LINC01238-202ENST00000426962 EIF3JO75822 258 aaKnown RBP12.47□□□□□ -0.41
LINC01238-202ENST00000426962 NR3C2P08235 984 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 POLR2MP0CAP2 368 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 TXNP10599 105 aaKnown RBP12.47□□□□□ -0.41
LINC01238-202ENST00000426962 ITGB8P26012 769 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 ITGA7Q13683 1181 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 COL9A3Q14050 684 aaPredicted RBP12.47□□□□□ -0.41
LINC01238-202ENST00000426962 BRDTQ58F21 947 aaPredicted RBP12.47□□□□□ -0.41
LINC01238-202ENST00000426962 SEPT14Q6ZU15 432 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 SGMS1Q86VZ5 419 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 SLC43A3Q8NBI5 491 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 OR6J1Q8NGC5 347 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 RRP36Q96EU6 259 aaKnown RBP12.47□□□□□ -0.41
LINC01238-202ENST00000426962 MYL10Q9BUA6 226 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 SPZ1Q9BXG8 430 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 PXMP2Q9NR77 195 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 POLR3EQ9NVU0 708 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 SLC12A7Q9Y666 1083 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 LCTP09848 1927 aa12.47□□□□□ -0.41
LINC01238-202ENST00000426962 SOX1O00570 391 aaPredicted RBP12.46□□□□□ -0.41
LINC01238-202ENST00000426962 KPNA6O60684 536 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 TIMP1P01033 207 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 EIF2AK2P19525 551 aaKnown RBP12.46□□□□□ -0.41
LINC01238-202ENST00000426962 HOXA13P31271 388 aaPredicted RBP12.46□□□□□ -0.41
LINC01238-202ENST00000426962 EXOSC10Q01780 885 aaKnown RBP12.46□□□□□ -0.41
LINC01238-202ENST00000426962 KRT32Q14532 448 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 GPR153Q6NV75 609 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 CCDC62Q6P9F0 684 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 SYNE3Q6ZMZ3 975 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 DHX32Q7L7V1 743 aaKnown RBP12.46□□□□□ -0.41
LINC01238-202ENST00000426962 FAM126BQ8IXS8 530 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 RASEFQ8IZ41 740 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 SRBD1Q8N5C6 995 aaKnown RBP12.46□□□□□ -0.41
LINC01238-202ENST00000426962 FANCBQ8NB91 859 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 PIBF1Q8WXW3 757 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 LRRC2Q9BYS8 371 aa12.46□□□□□ -0.41
LINC01238-202ENST00000426962 GRIN2DO15399 1336 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 A6NJR5 290 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 ARIH2O95376 493 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 CD4P01730 458 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 MYL3P08590 195 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 HMGB1P09429 215 aaKnown RBP12.45□□□□□ -0.42
LINC01238-202ENST00000426962 PURAQ00577 322 aaKnown RBP12.45□□□□□ -0.42
LINC01238-202ENST00000426962 LY6KQ17RY6 165 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 ADCK5Q3MIX3 580 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 ERICH6BQ5W0A0 696 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 VSIG10LQ86VR7 867 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 COPS5Q92905 334 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 LRCH3Q96II8 777 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 PDCD2LQ9BRP1 358 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 MTG1Q9BT17 334 aaPredicted RBP12.45□□□□□ -0.42
LINC01238-202ENST00000426962 SEC63Q9UGP8 760 aaKnown RBP12.45□□□□□ -0.42
LINC01238-202ENST00000426962 TBX21Q9UL17 535 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 TRIOBPQ9H2D6 2365 aa12.45□□□□□ -0.42
LINC01238-202ENST00000426962 PLEKHA8P1O95397 391 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 GH1P01241 217 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 MYCLP12524 364 aaPredicted RBP12.44□□□□□ -0.42
LINC01238-202ENST00000426962 RXRAP19793 462 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 PSMC6P62333 389 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 PGM5Q15124 567 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 SHHQ15465 462 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 MFSD5Q6N075 450 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 KCNV1Q6PIU1 500 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 FCHSD1Q86WN1 690 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 CMTR1Q8N1G2 835 aaKnown RBP12.44□□□□□ -0.42
LINC01238-202ENST00000426962 KCNB2Q92953 911 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 PPP4R2Q9NY27 417 aa12.44□□□□□ -0.42
LINC01238-202ENST00000426962 DDX41Q9UJV9 622 aaKnown RBP12.44□□□□□ -0.42
LINC01238-202ENST00000426962 REC8O95072 547 aa12.43□□□□□ -0.42
LINC01238-202ENST00000426962 TGFB3P10600 412 aa12.43□□□□□ -0.42
LINC01238-202ENST00000426962 HSPA4P34932 840 aa12.43□□□□□ -0.42
LINC01238-202ENST00000426962 FPGSQ05932 587 aa12.43□□□□□ -0.42
LINC01238-202ENST00000426962 CCDC82Q8N4S0 544 aa12.43□□□□□ -0.42
LINC01238-202ENST00000426962 CUL5Q93034 780 aa12.43□□□□□ -0.42
LINC01238-202ENST00000426962 RBM28Q9NW13 759 aaKnown RBP12.43□□□□□ -0.42
LINC01238-202ENST00000426962 MRVI1Q9Y6F6 885 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms