RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 WASF1Q92558 559 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 SLC26A6Q9BXS9 759 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 BACH2Q9BYV9 841 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 NCOA5Q9HCD5 579 aaKnown RBP16.83■□□□□ 0.28
LIMS1-206ENST00000414829 SH2B1Q9NRF2 756 aaPredicted RBP16.83■□□□□ 0.28
LIMS1-206ENST00000414829 TPCN1Q9ULQ1 816 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 LIMCH1Q9UPQ0 1083 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 ASTN1O14525 1302 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 STK36Q9NRP7 1315 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 KBTBD13C9JR72 458 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 DNM1LO00429 736 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 NKRFO15226 690 aaKnown RBP eCLIP16.82■□□□□ 0.28
LIMS1-206ENST00000414829 DUSP11O75319 330 aaKnown RBP16.82■□□□□ 0.28
LIMS1-206ENST00000414829 FOSP01100 380 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-206ENST00000414829 EN2P19622 333 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-206ENST00000414829 GNA11P29992 359 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 CCND2P30279 289 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 MCM2P49736 904 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 STK3Q13188 491 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 AP3B2Q13367 1082 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 NTRK3Q16288 839 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 IQSEC1Q6DN90 963 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 RNF180Q86T96 592 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 SCFD2Q8WU76 684 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 GPKOWQ92917 476 aaPredicted RBP eCLIP16.82■□□□□ 0.28
LIMS1-206ENST00000414829 SHISA4Q96DD7 197 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 ZSCAN31Q96LW9 406 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-206ENST00000414829 XPNPEP3Q9NQH7 507 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 SH3GLB2Q9NR46 395 aa16.82■□□□□ 0.28
LIMS1-206ENST00000414829 FRMPD4Q14CM0 1322 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 hCG_1642624A0A1W2PR95 340 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 STXBP3O00186 592 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 HOXA13P31271 388 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-206ENST00000414829 SCRN1Q12765 414 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 CCDC144BQ3MJ40 725 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 GNPTABQ3T906 1256 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 PRAMEF19Q5SWL8 479 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 LHX8Q68G74 356 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 KCNV1Q6PIU1 500 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 NECAB2Q7Z6G3 386 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 FCHSD1Q86WN1 690 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 FBXO16Q8IX29 292 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-206ENST00000414829 GTF3C6Q969F1 213 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 TAAR1Q96RJ0 339 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 PDCD2LQ9BRP1 358 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 C6orf50Q9HD87 102 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 RIC8AQ9NPQ8 531 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 COL20A1Q9P218 1284 aa16.81■□□□□ 0.28
LIMS1-206ENST00000414829 EIF3JO75822 258 aaKnown RBP16.8■□□□□ 0.28
LIMS1-206ENST00000414829 NR3C2P08235 984 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 EIF2AK2P19525 551 aaKnown RBP16.8■□□□□ 0.28
LIMS1-206ENST00000414829 TNFAIP2Q03169 654 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 TTLL4Q14679 1199 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 GALNT17Q6IS24 598 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 NOL8Q76FK4 1167 aaKnown RBP16.8■□□□□ 0.28
LIMS1-206ENST00000414829 PHKBQ93100 1093 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 HTATIP2Q9BUP3 242 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 KATNBL1Q9H079 304 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 Q9Y3F1 56 aa16.8■□□□□ 0.28
LIMS1-206ENST00000414829 SMCO2A6NFE2 343 aa16.79■□□□□ 0.28
LIMS1-206ENST00000414829 MEIS2O14770 477 aa16.79■□□□□ 0.28
LIMS1-206ENST00000414829 MLLT1Q03111 559 aaPredicted RBP16.79■□□□□ 0.28
LIMS1-206ENST00000414829 BRDTQ58F21 947 aaPredicted RBP16.79■□□□□ 0.28
LIMS1-206ENST00000414829 TBC1D5Q92609 795 aa16.79■□□□□ 0.28
LIMS1-206ENST00000414829 PURBQ96QR8 312 aaKnown RBP16.79■□□□□ 0.28
LIMS1-206ENST00000414829 KIF2CQ99661 725 aa16.79■□□□□ 0.28
LIMS1-206ENST00000414829 ZMYND12Q9H0C1 365 aa16.79■□□□□ 0.28
LIMS1-206ENST00000414829 AP5M1Q9H0R1 490 aa16.79■□□□□ 0.28
LIMS1-206ENST00000414829 BRCA2P51587 3418 aa16.79■□□□□ 0.28
LIMS1-206ENST00000414829 RBM47A0AV96 593 aaKnown RBP16.78■□□□□ 0.28
LIMS1-206ENST00000414829 ZEB2O60315 1214 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 CST5P28325 142 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-206ENST00000414829 PGM5Q15124 567 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 ME3Q16798 604 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 DUSP28Q4G0W2 176 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 PCNX4Q63HM2 1172 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 EEPD1Q7L9B9 569 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 TLK2Q86UE8 772 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 REXO1Q8N1G1 1221 aaKnown RBP16.78■□□□□ 0.28
LIMS1-206ENST00000414829 PCSK9Q8NBP7 692 aaKnown RBP16.78■□□□□ 0.28
LIMS1-206ENST00000414829 CDHR1Q96JP9 859 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 LARP6Q9BRS8 491 aaKnown RBP16.78■□□□□ 0.28
LIMS1-206ENST00000414829 LLPHQ9BRT6 129 aaKnown RBP16.78■□□□□ 0.28
LIMS1-206ENST00000414829 WDR11Q9BZH6 1224 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 KIAA0100Q14667 2235 aaKnown RBP16.78■□□□□ 0.28
LIMS1-206ENST00000414829 PLXNA1Q9UIW2 1896 aa16.78■□□□□ 0.28
LIMS1-206ENST00000414829 MOXD2PA6NHM9 499 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 TGFB3P10600 412 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 ADCYAP1R1P41586 468 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 PKN1Q16512 942 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 TAPT1Q6NXT6 567 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 USP17L6PQ6QN14 398 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 UBE2Q1Q7Z7E8 422 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 VSIG10LQ86VR7 867 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 TSEN34Q9BSV6 310 aaKnown RBP16.77■□□□□ 0.28
LIMS1-206ENST00000414829 UPF3AQ9H1J1 476 aaKnown RBP16.77■□□□□ 0.28
LIMS1-206ENST00000414829 C11orf49Q9H6J7 331 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 KIF3AQ9Y496 699 aa16.77■□□□□ 0.28
LIMS1-206ENST00000414829 SYNRGQ9UMZ2 1314 aa16.76■□□□□ 0.27
LIMS1-206ENST00000414829 MYCLP12524 364 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms