RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 FXR2P51116 673 aaKnown RBP eCLIP11.1□□□□□ -0.63
COL17A1-203ENST00000393211 KIF11P52732 1056 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 SEPT2Q15019 361 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 DDB1Q16531 1140 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 DZIP1Q86YF9 867 aaKnown RBP11.1□□□□□ -0.63
COL17A1-203ENST00000393211 PROM2Q8N271 834 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 SPATA4Q8NEY3 305 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 CELF1Q92879 486 aaKnown RBP11.1□□□□□ -0.63
COL17A1-203ENST00000393211 CAVIN3Q969G5 261 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 LUC7LQ9NQ29 371 aaKnown RBP11.1□□□□□ -0.63
COL17A1-203ENST00000393211 GOLGA6AQ9NYA3 693 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 LRWD1Q9UFC0 647 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 RSPH14Q9UHP6 348 aa11.1□□□□□ -0.63
COL17A1-203ENST00000393211 COL16A1Q07092 1604 aaPredicted RBP11.1□□□□□ -0.63
COL17A1-203ENST00000393211 MACROD2A1Z1Q3 448 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 RBAK-RBAKDNI3L0D1 243 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 ZNF263O14978 683 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 CYTH3O43739 400 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 USP17L8P0C7I0 530 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 PRDX5P30044 214 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 PDIA5Q14554 519 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 SLC35G1Q2M3R5 365 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 SOGA3Q5TF21 947 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 C3orf67Q6ZVT6 689 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 LRRC15Q8TF66 581 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 RRP36Q96EU6 259 aaKnown RBP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 OSBPL9Q96SU4 736 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 TMEM47Q9BQJ4 181 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 RAB34Q9BZG1 259 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 SEMA6BQ9H3T3 888 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 DEF6Q9H4E7 631 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 ARHGAP20Q9P2F6 1191 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 NAV1Q8NEY1 1877 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 BAZ2BQ9UIF8 2168 aaKnown RBP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 A0A087WUV0 522 aaPredicted RBP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 SMCO2A6NFE2 343 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 KLRF2D3W0D1 207 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 TRIM66O15016 1216 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 ZNF185O15231 689 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 SLC26A4O43511 780 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 AKR1B10O60218 316 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 CCNT1O60563 726 aaKnown RBP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 EIF4A3P38919 411 aaKnown RBP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 KLK7P49862 253 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 NAPAP54920 295 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 SKOR1P84550 965 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 CYP27A1Q02318 531 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 EVX2Q03828 476 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 C2orf54Q08AI8 447 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 TMEM266Q2M3C6 531 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 CCDC181Q5TID7 509 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 C2CD5Q86YS7 1000 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 KIAA0895Q8NCT3 520 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 C1orf131Q8NDD1 294 aaKnown RBP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 NLRP3Q96P20 1036 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 NOX5Q96PH1 765 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 TSG101Q99816 390 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 MMTAG2Q9BU76 263 aaKnown RBP11.09□□□□□ -0.63
COL17A1-203ENST00000393211 STIM2Q9P246 746 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 DUSP10Q9Y6W6 482 aa11.09□□□□□ -0.63
COL17A1-203ENST00000393211 IRS2Q9Y4H2 1338 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 COL24A1Q17RW2 1714 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 TAF1P21675 1872 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 GRID2IPA4D2P6 1211 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 WTIPA6NIX2 430 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 LDHBP07195 334 aaKnown RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 MYBL2P10244 700 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 FCER1AP12319 257 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 RASA1P20936 1047 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 MAGEA1P43355 309 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 IRAK1P51617 712 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 ASTE1Q2TB18 679 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 LETM2Q2VYF4 491 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 TTC31Q49AM3 519 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 EMC10Q5UCC4 262 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 PDXDC1Q6P996 788 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 SND1Q7KZF4 910 aaKnown RBP eCLIP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 MTMR9Q96QG7 549 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 PLIN2Q99541 437 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 CAPS2Q9BXY5 557 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 RNF216Q9NWF9 866 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 SEC63Q9UGP8 760 aaKnown RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 TFR2Q9UP52 801 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 CAPN6Q9Y6Q1 641 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 SPATA31A1Q5TZJ5 1347 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 ATXN2Q99700 1313 aaKnown RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 CNTNAP4Q9C0A0 1308 aa11.08□□□□□ -0.64
COL17A1-203ENST00000393211 ZNF335Q9H4Z2 1342 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-203ENST00000393211 TNRC6CQ9HCJ0 1690 aaKnown RBP11.07□□□□□ -0.64
COL17A1-203ENST00000393211 HSF2BPO75031 334 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 GNA14O95837 355 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 NOVP48745 357 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 EHHADHQ08426 723 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 GRB10Q13322 594 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 CFAP221Q4G0U5 840 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 FOXR1Q6PIV2 292 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 SPATS2Q86XZ4 545 aaKnown RBP11.07□□□□□ -0.64
COL17A1-203ENST00000393211 IFT20Q8IY31 132 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 REXO1Q8N1G1 1221 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms