RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CAGE1Q8TC20 777 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 PSMB7Q99436 277 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 JADE2Q9NQC1 790 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 RREB1Q92766 1687 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 AKR1B1P15121 316 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 MEA1Q16626 185 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 PAPD7Q5XG87 772 aaKnown RBP18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 KIAA0825Q8IV33 1275 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 ZSCAN29Q8IWY8 852 aaPredicted RBP18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 PROM2Q8N271 834 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 ZNF287Q9HBT7 754 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 SMARCAL1Q9NZC9 954 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 HPCAL4Q9UM19 191 aa18.13■□□□□ 0.49
NKX3-1-201ENST00000380871 ZC3H4Q9UPT8 1303 aaKnown RBP18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 STXBP3O00186 592 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 EPHB6O15197 1021 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 PDE4DQ08499 809 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 DDX4Q9NQI0 724 aaKnown RBP18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 IDEP14735 1019 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 DNM2P50570 870 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 MIIPQ5JXC2 388 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 RRP36Q96EU6 259 aaKnown RBP18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 LRWD1Q9UFC0 647 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 LAMB2P55268 1798 aa18.12■□□□□ 0.49
NKX3-1-201ENST00000380871 TECP42680 631 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 MTIF2P46199 727 aaKnown RBP18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 KCNB1Q14721 858 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 CCDC96Q2M329 555 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 CRY2Q49AN0 593 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 LRRC31Q6UY01 552 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 CERS5Q8N5B7 392 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 HDAC7Q8WUI4 952 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 ADRA2BP18089 450 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 ASIC1P78348 528 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 STIM1Q13586 685 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 CWC15Q9P013 229 aaKnown RBP18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 CAPN6Q9Y6Q1 641 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 PALM3A6NDB9 673 aaPredicted RBP18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 KRT86O43790 486 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 APBA3O96018 575 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 TXKP42681 527 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 TUBB4BP68371 445 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 P2RX5Q93086 422 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 TMX4Q9H1E5 349 aaPredicted RBP18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 MLXIPQ9HAP2 919 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 BARHL2Q9NY43 387 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 EHD2Q9NZN4 543 aa18.11■□□□□ 0.49
NKX3-1-201ENST00000380871 MMP10P09238 476 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 IL1R1P14778 569 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 GGCXP38435 758 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 KRT83P78385 493 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 SHROOM1Q2M3G4 852 aaPredicted RBP18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 TTBK2Q6IQ55 1244 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 SAMD1Q6SPF0 538 aaPredicted RBP18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 C16orf86Q6ZW13 317 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 CABP7Q86V35 215 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 MSL3Q8N5Y2 521 aaKnown RBP18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 NEDD1Q8NHV4 660 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 GJA10Q969M2 543 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 NOC4LQ9BVI4 516 aaKnown RBP18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 TRIM9Q9C026 710 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 KIAA1551Q9HCM1 1747 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 RGL2O15211 777 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 PRPF6O94906 941 aaKnown RBP18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 PLCG2P16885 1265 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 RSPH14Q9UHP6 348 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 CXCR5P32302 372 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 COL23A1Q86Y22 540 aaPredicted RBP18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 COG1Q8WTW3 980 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 SLC39A2Q9NP94 309 aa18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 FAM207AQ9NSI2 230 aaPredicted RBP18.1■□□□□ 0.49
NKX3-1-201ENST00000380871 CYLC1P35663 651 aaPredicted RBP18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 FKBP15Q5T1M5 1219 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 KCTD1Q719H9 257 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 SLF2Q8IX21 1173 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 KIAA0895Q8NCT3 520 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 SELENOOQ9BVL4 669 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 MED4Q9NPJ6 270 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 LAMB1P07942 1786 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 MATR3P43243 847 aaKnown RBP eCLIP18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 TNNI2P48788 182 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 NFIAQ12857 509 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 ZFPM1Q8IX07 1006 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 TBCKQ8TEA7 893 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 CCSER1Q9C0I3 900 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 RASSF4Q9H2L5 321 aa18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 ZNHIT6Q9NWK9 470 aaKnown RBP18.09■□□□□ 0.49
NKX3-1-201ENST00000380871 ZBED6P86452 979 aa18.08■□□□□ 0.49
NKX3-1-201ENST00000380871 C6orf50Q9HD87 102 aa18.08■□□□□ 0.49
NKX3-1-201ENST00000380871 AGPSO00116 658 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 MARCH6O60337 910 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 CCNE1P24864 410 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 UBE2SQ16763 222 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 CERKQ8TCT0 537 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 SEMA6BQ9H3T3 888 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 RABEP2Q9H5N1 569 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 EIF3CLB5ME19 914 aaKnown RBP18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 IPO7O95373 1038 aaKnown RBP18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 MOCS3O95396 460 aa18.08■□□□□ 0.48
NKX3-1-201ENST00000380871 SNAP25P60880 206 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms