RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 ABCC4O15439 1325 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 PPLO60437 1756 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 POLE2P56282 527 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 SNAPC2Q13487 334 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 TYW1BQ6NUM6 668 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 GPC2Q8N158 579 aa8.98□□□□□ -0.97
VPS41-202ENST00000310301 RBM46Q8TBY0 533 aaKnown RBP8.98□□□□□ -0.97
VPS41-202ENST00000310301 ZNF532Q9HCE3 1301 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 PPFIA2O75334 1257 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 MX2P20592 715 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 TMED1Q13445 227 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 POSTNQ15063 836 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 LGSNQ5TDP6 509 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 CHADLQ6NUI6 762 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 CELF1Q92879 486 aaKnown RBP8.97□□□□□ -0.97
VPS41-202ENST00000310301 GBA2Q9HCG7 927 aaPredicted RBP8.97□□□□□ -0.97
VPS41-202ENST00000310301 MRPL11Q9Y3B7 192 aaKnown RBP8.97□□□□□ -0.97
VPS41-202ENST00000310301 PPP2R3BQ9Y5P8 575 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 SLC27A2O14975 620 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 ATP5JP18859 108 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 PPP2R5BQ15173 497 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 FBXO40Q9UH90 709 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 SERPINB13Q9UIV8 391 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 AOX1Q06278 1338 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 CETPP11597 493 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 ETF1P62495 437 aaKnown RBP8.97□□□□□ -0.97
VPS41-202ENST00000310301 HSP90AA5PQ58FG0 334 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 HACE1Q8IYU2 909 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 NELFBQ8WX92 580 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 DACT3Q96B18 629 aaPredicted RBP8.97□□□□□ -0.97
VPS41-202ENST00000310301 ZMAT2Q96NC0 199 aaKnown RBP8.97□□□□□ -0.97
VPS41-202ENST00000310301 USP44Q9H0E7 712 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 USP17L5A8MUK1 530 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 KCTD16Q68DU8 428 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 HVCN1Q96D96 273 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 LLPHQ9BRT6 129 aaKnown RBP8.97□□□□□ -0.97
VPS41-202ENST00000310301 HOXC10Q9NYD6 342 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 GGA3Q9NZ52 723 aa8.97□□□□□ -0.97
VPS41-202ENST00000310301 ROBO1Q9Y6N7 1651 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 KLHL30Q0D2K2 578 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 FAM47CQ5HY64 1035 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 LIN9Q5TKA1 542 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 SFMBT2Q5VUG0 894 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 REM2Q8IYK8 340 aaPredicted RBP8.96□□□□□ -0.97
VPS41-202ENST00000310301 ANKRD13AQ8IZ07 590 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 TCP11Q8WWU5 503 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 GPCPD1Q9NPB8 672 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 THEGQ9P2T0 379 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 GPAA1O43292 621 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 DTNBO60941 627 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 SERPINB6P35237 376 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 NCOA5Q9HCD5 579 aaKnown RBP8.96□□□□□ -0.97
VPS41-202ENST00000310301 BCL9O00512 1426 aa8.96□□□□□ -0.97
VPS41-202ENST00000310301 ATP8B1O43520 1251 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 PNOCQ13519 176 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 INTS5Q6P9B9 1019 aaKnown RBP8.96□□□□□ -0.98
VPS41-202ENST00000310301 TRIM58Q8NG06 486 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 CCDC51Q96ER9 411 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 HINFPQ9BQA5 517 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 LETM2Q2VYF4 491 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 LRRC24Q50LG9 513 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 WDR44Q5JSH3 913 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 RSPH3Q86UC2 560 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 LDHDQ86WU2 507 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 CCDC197Q8NCU1 140 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 HYOU1Q9Y4L1 999 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 ZNF142P52746 1687 aaPredicted RBP8.96□□□□□ -0.98
VPS41-202ENST00000310301 CALUO43852 315 aaPredicted RBP8.96□□□□□ -0.98
VPS41-202ENST00000310301 SRGNP10124 158 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 GAS2L3Q86XJ1 694 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 P3H4Q92791 437 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 TMEM87BQ96K49 555 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 USTQ9Y2C2 406 aa8.96□□□□□ -0.98
VPS41-202ENST00000310301 MED1Q15648 1581 aaPredicted RBP8.96□□□□□ -0.98
VPS41-202ENST00000310301 HNRNPH2P55795 449 aaKnown RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 RAD51AP2Q09MP3 1159 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 UBE3CQ15386 1083 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 KSR1Q8IVT5 923 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 ZBTB21Q9ULJ3 1066 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 TNPO2O14787 897 aaKnown RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 ONECUT3O60422 494 aaPredicted RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 STX10O60499 249 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 SCARF1Q14162 830 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 PPP2R5DQ14738 602 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 TAF11Q15544 211 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 ANGEL2Q5VTE6 544 aaKnown RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 RRAGAQ7L523 313 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 RABGGTAQ92696 567 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 PPP1R13BQ96KQ4 1090 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS41-202ENST00000310301 STK24Q9Y6E0 443 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 KRIT1O00522 736 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 KCNK3O14649 394 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 PIK3AP1Q6ZUJ8 805 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 FAM160B2Q86V87 743 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 DPH5Q9H2P9 285 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 MRFAP1Q9Y605 127 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 NBPF26B4DH59 902 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 FDX1P10109 184 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 DNM2P50570 870 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms