RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 HTTP42858 3142 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SPDYE3A6NKU9 549 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 STXBP3O00186 592 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PPFIA3O75145 1194 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 DEXIO95424 95 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SNAI1O95863 264 aaPredicted RBP12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 IGHA2P01877 340 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 RARBP10826 455 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ADCY7P51828 1080 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 EEPD1Q7L9B9 569 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 FBXO16Q8IX29 292 aaPredicted RBP12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 TRPV1Q8NER1 839 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 GTF3C6Q969F1 213 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ZSCAN31Q96LW9 406 aaPredicted RBP12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 TAAR1Q96RJ0 339 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 IWS1Q96ST2 819 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 KIF2CQ99661 725 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PXMP2Q9NR77 195 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 COL20A1Q9P218 1284 aa12.64□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 STK36Q9NRP7 1315 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SMCO2A6NFE2 343 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PIK3CDO00329 1044 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 LARGE1O95461 756 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ZNF865P0CJ78 1059 aaPredicted RBP12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 XBP1P17861 261 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 EN2P19622 333 aaPredicted RBP12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 CCND2P30279 289 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ME3Q16798 604 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 IFFO2Q5TF58 517 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ANO1Q5XXA6 986 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 TEX2Q8IWB9 1127 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 MORC4Q8TE76 937 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 WASF1Q92558 559 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 C6orf50Q9HD87 102 aa12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SH2B1Q9NRF2 756 aaPredicted RBP12.63□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 DOCK5Q9H7D0 1870 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ESYT2A0FGR8 921 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 MYCLP12524 364 aaPredicted RBP12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 EDNRBP24530 442 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 GNA11P29992 359 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 MCM2P49736 904 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PGM5Q15124 567 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 STXBP2Q15833 593 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PKN1Q16512 942 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 UBE2SQ16763 222 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 CCDC144BQ3MJ40 725 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 USP17L6PQ6QN14 398 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 NECAB1Q8N987 351 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ANKLE1Q8NAG6 615 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 BICD2Q8TD16 824 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SHISA4Q96DD7 197 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PDCD2LQ9BRP1 358 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SPC25Q9HBM1 224 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 RIC8AQ9NPQ8 531 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 XPNPEP3Q9NQH7 507 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SH3GLB2Q9NR46 395 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 CENPFP49454 3210 aa12.62□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 KBTBD13C9JR72 458 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 MEIS2O14770 477 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 FARP2O94887 1054 aaPredicted RBP12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 NR3C2P08235 984 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 NLRP5P59047 1200 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 TNFAIP2Q03169 654 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 RNF180Q86T96 592 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 CCDC83Q8IWF9 413 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 KATNBL1Q9H079 304 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 CRISPLD2Q9H0B8 497 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 VPS54Q9P1Q0 977 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ORC3Q9UBD5 711 aaPredicted RBP12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 OGDHLQ9ULD0 1010 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 DDX49Q9Y6V7 483 aaKnown RBP12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 FRMPD4Q14CM0 1322 aa12.61□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 DUSP11O75319 330 aaKnown RBP12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 STAM2O75886 525 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 FOSP01100 380 aaPredicted RBP12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ADCYAP1R1P41586 468 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 AP3B2Q13367 1082 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 TTLL4Q14679 1199 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 LHX8Q68G74 356 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 MCTP2Q6DN12 878 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 IQSEC1Q6DN90 963 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 TYW1BQ6NUM6 668 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 FAM177A1Q8N128 213 aaPredicted RBP12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 REXO1Q8N1G1 1221 aaKnown RBP12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ARRDC4Q8NCT1 418 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 SCFD2Q8WU76 684 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 LENG1Q96BZ8 264 aaPredicted RBP12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 WDR11Q9BZH6 1224 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ZMYND12Q9H0C1 365 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 AP5M1Q9H0R1 490 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PCDHA6Q9UN73 950 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 PCDHA8Q9Y5H6 950 aa12.6□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 ALPK3Q96L96 1907 aa12.59□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.59□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 DNM1LO00429 736 aa12.59□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 NKRFO15226 690 aaKnown RBP eCLIP12.59□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 EIF3JO75822 258 aaKnown RBP12.59□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 TRIM29Q14134 588 aa12.59□□□□□ -0.39
CSPG4P1Y-201ENST00000306641 GNPTABQ3T906 1256 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms