RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CHMLP26374 656 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 SMAD3P84022 425 aaKnown RBP11.37□□□□□ -0.59
VPS41-201ENST00000265745 FPGSQ05932 587 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 ASPRV1Q53RT3 343 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 MFSD5Q6N075 450 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 DNERQ8NFT8 737 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 RUFY2Q8WXA3 655 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 UBAC1Q9BSL1 405 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 MAF1Q9H063 256 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 RAD50Q92878 1312 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 PTH1RQ03431 593 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 ITGA7Q13683 1181 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 SEC23AQ15436 765 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 CDC37Q16543 378 aaPredicted RBP11.36□□□□□ -0.59
VPS41-201ENST00000265745 USH1GQ495M9 461 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 CYB5R4Q7L1T6 521 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 C16orf59Q7L2K0 433 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 TBC1D5Q92609 795 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 SEZ6LQ9BYH1 1024 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 VAT1LQ9HCJ6 419 aa11.36□□□□□ -0.59
VPS41-201ENST00000265745 B4DLN1 442 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 DPYSL4O14531 572 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 TLR3O15455 904 aaKnown RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 CYP21A2P08686 494 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 MRPL12P52815 198 aaKnown RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 PDE4DQ08499 809 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 TRDNQ13061 729 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 QRICH1Q2TAL8 776 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 IFIT1BQ5T764 474 aaKnown RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 STAG2Q8N3U4 1231 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 KRI1Q8N9T8 703 aaKnown RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 SLC17A8Q8NDX2 589 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 SYTL5Q8TDW5 730 aaPredicted RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 RNPC3Q96LT9 517 aaKnown RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 FAM161BQ96MY7 647 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 GUCD1Q96NT3 240 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 MPHOSPH6Q99547 160 aaKnown RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 SEMA6BQ9H3T3 888 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 JMJD4Q9H9V9 463 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 ZNFX1Q9P2E3 1918 aaKnown RBP11.35□□□□□ -0.59
VPS41-201ENST00000265745 ABCB11O95342 1321 aa11.35□□□□□ -0.59
VPS41-201ENST00000265745 PALM3A6NDB9 673 aaPredicted RBP11.34□□□□□ -0.59
VPS41-201ENST00000265745 C19orf67A6NJJ6 358 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 NKRFO15226 690 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS41-201ENST00000265745 SGSM2O43147 1006 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 CSF2RAP15509 400 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 CYP2C18P33260 490 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 PSMC6P62333 389 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 PPIGQ13427 754 aaKnown RBP eCLIP11.34□□□□□ -0.598e-9■□□□□ 9.9
VPS41-201ENST00000265745 ZNF697Q5TEC3 545 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 FBXO11Q86XK2 927 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 MCF2L2Q86YR7 1114 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 TMEM199Q8N511 208 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 NSUN6Q8TEA1 469 aaKnown RBP11.34□□□□□ -0.59
VPS41-201ENST00000265745 SCFD2Q8WU76 684 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 MTMR8Q96EF0 704 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 TAAR1Q96RJ0 339 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 TRPV6Q9H1D0 765 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 COL20A1Q9P218 1284 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 MRPL11Q9Y3B7 192 aaKnown RBP11.34□□□□□ -0.59
VPS41-201ENST00000265745 TAF6LQ9Y6J9 622 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 MYH4Q9Y623 1939 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 FRMPD3Q5JV73 1810 aa11.34□□□□□ -0.59
VPS41-201ENST00000265745 COL6A3P12111 3177 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 A6NJR5 290 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 KLRF2D3W0D1 207 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 DHX16O60231 1041 aaKnown RBP11.33□□□□□ -0.6
VPS41-201ENST00000265745 B4GALT4O60513 344 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 TXNP10599 105 aaKnown RBP11.33□□□□□ -0.6
VPS41-201ENST00000265745 CPT1AP50416 773 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 PURAQ00577 322 aaKnown RBP11.33□□□□□ -0.6
VPS41-201ENST00000265745 DSG2Q14126 1118 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 PPP2R5BQ15173 497 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 TMEM240Q5SV17 173 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 RASIP1Q5U651 963 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 CCDC62Q6P9F0 684 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 MAP4K1Q92918 833 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 IWS1Q96ST2 819 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.33□□□□□ -0.61e-8■■■□□ 15.9
VPS41-201ENST00000265745 AMNQ9BXJ7 453 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 PPP1R12CQ9BZL4 782 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 ALDH8A1Q9H2A2 487 aaPredicted RBP11.33□□□□□ -0.6
VPS41-201ENST00000265745 TTYH1Q9H313 450 aaPredicted RBP11.33□□□□□ -0.6
VPS41-201ENST00000265745 HIPK3Q9H422 1215 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 BMP2KQ9NSY1 1161 aaPredicted RBP11.33□□□□□ -0.6
VPS41-201ENST00000265745 POLR3EQ9NVU0 708 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 MAD2L2Q9UI95 211 aa11.33□□□□□ -0.6
VPS41-201ENST00000265745 LAMA2P24043 3122 aaKnown RBP11.33□□□□□ -0.6
VPS41-201ENST00000265745 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 E7EWF7 191 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 OPLAHO14841 1288 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 IFIT3O14879 490 aaKnown RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 ZBTB5O15062 677 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 PPP1R11O60927 126 aaPredicted RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 ARIH2O95376 493 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 MYL3P08590 195 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 ACRP10323 421 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 TTLL4Q14679 1199 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 STXBP2Q15833 593 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms