RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W TY1A-DR4O74302 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-HP0C2I4 478 aaKnown RBP10.24□□□□□ -0.77
VPS28YPL065W TY1A-AP0CX57 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-PR1P0CX58 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-ORP0CX59 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-PR2P0CX60 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-DR5P0CX65 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-ER2P0CX66 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-GR3P0CX67 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-LR1P0CX68 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-MR2P0CX69 440 aa10.24□□□□□ -0.77
VPS28YPL065W SEC2P17065 759 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-JR2P47099 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-DR1Q03856 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-ML1Q04706 440 aaKnown RBP10.24□□□□□ -0.77
VPS28YPL065W TY1A-BRQ12217 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-NL2Q12470 440 aa10.24□□□□□ -0.77
VPS28YPL065W TY1A-GR2Q12485 440 aa10.24□□□□□ -0.77
VPS28YPL065W TEA1P47988 759 aa10.21□□□□□ -0.77
VPS28YPL065W KEX2P13134 814 aa10.19□□□□□ -0.78
VPS28YPL065W RRN7P40992 514 aa10.19□□□□□ -0.78
VPS28YPL065W TRK1P12685 1235 aa10.17□□□□□ -0.78
VPS28YPL065W DIT2P21595 489 aa10.17□□□□□ -0.78
VPS28YPL065W RTF1P53064 558 aa10.17□□□□□ -0.78
VPS28YPL065W YNL115CP53925 644 aa10.12□□□□□ -0.79
VPS28YPL065W ERF2Q06551 359 aa10.12□□□□□ -0.79
VPS28YPL065W SIT4P20604 311 aa10.1□□□□□ -0.79
VPS28YPL065W CST6P40535 587 aa10.1□□□□□ -0.79
VPS28YPL065W LAM6Q08001 693 aa10.1□□□□□ -0.79
VPS28YPL065W NIS1P53939 407 aa10.07□□□□□ -0.8
VPS28YPL065W FRK1Q03002 865 aaPredicted RBP10.07□□□□□ -0.8
VPS28YPL065W YMR196WQ04336 1088 aa10.06□□□□□ -0.8
VPS28YPL065W BDP1P46678 594 aa10.05□□□□□ -0.8
VPS28YPL065W ATF2P53296 535 aa10.05□□□□□ -0.8
VPS28YPL065W TUB4P53378 473 aa10.04□□□□□ -0.8
VPS28YPL065W YNR021WP53723 404 aaKnown RBP10.04□□□□□ -0.8
VPS28YPL065W PAC1P39946 494 aaKnown RBP10.02□□□□□ -0.81
VPS28YPL065W AGE1Q04412 482 aa10.02□□□□□ -0.81
VPS28YPL065W FPK1P53739 893 aa10.01□□□□□ -0.81
VPS28YPL065W HED1Q03937 162 aa9.99□□□□□ -0.81
VPS28YPL065W SLY41P22215 453 aa9.98□□□□□ -0.81
VPS28YPL065W CDC4P07834 779 aa9.96□□□□□ -0.82
VPS28YPL065W MOD5P07884 428 aa9.96□□□□□ -0.82
VPS28YPL065W AIR1P40507 360 aaKnown RBP9.96□□□□□ -0.82
VPS28YPL065W KXD1P53158 218 aa9.96□□□□□ -0.82
VPS28YPL065W GCR2Q01722 534 aa9.96□□□□□ -0.82
VPS28YPL065W CLA4P48562 842 aa9.95□□□□□ -0.82
VPS28YPL065W HST2P53686 357 aa9.94□□□□□ -0.82
VPS28YPL065W GLC3P32775 704 aa9.93□□□□□ -0.82
VPS28YPL065W BRE2P43132 505 aa9.91□□□□□ -0.82
VPS28YPL065W TBF1Q02457 562 aa9.91□□□□□ -0.82
VPS28YPL065W PUS6P53294 404 aa9.9□□□□□ -0.82
VPS28YPL065W AIM7Q12156 149 aa9.9□□□□□ -0.82
VPS28YPL065W TPD3P31383 635 aa9.89□□□□□ -0.83
VPS28YPL065W MMP1Q12372 583 aa9.89□□□□□ -0.83
VPS28YPL065W GLN1P32288 370 aaKnown RBP9.88□□□□□ -0.83
VPS28YPL065W HXT10P43581 546 aa9.87□□□□□ -0.83
VPS28YPL065W BUB1P41695 1021 aaKnown RBP RIP-Chip data9.86□□□□□ -0.83not detected
VPS28YPL065W ALR1Q08269 859 aa9.86□□□□□ -0.83
VPS28YPL065W RPA14P50106 137 aa9.85□□□□□ -0.83
VPS28YPL065W PDC1P06169 563 aaKnown RBP9.84□□□□□ -0.83
VPS28YPL065W RRD1P40454 393 aaKnown RBP9.84□□□□□ -0.83
VPS28YPL065W PUS5Q06244 254 aa9.84□□□□□ -0.83
VPS28YPL065W SCJ1P25303 377 aa9.83□□□□□ -0.84
VPS28YPL065W YDL206WQ12424 762 aa9.82□□□□□ -0.84
VPS28YPL065W TRM1P15565 570 aaKnown RBP9.81□□□□□ -0.84
VPS28YPL065W SYH1Q02875 849 aaKnown RBP9.81□□□□□ -0.84
VPS28YPL065W HST3P53687 447 aa9.8□□□□□ -0.84
VPS28YPL065W YPR097WQ06839 1073 aa9.8□□□□□ -0.84
VPS28YPL065W AFT1P22149 690 aa9.78□□□□□ -0.84
VPS28YPL065W ESS1P22696 170 aa9.78□□□□□ -0.84
VPS28YPL065W MET32Q12041 191 aa9.78□□□□□ -0.84
VPS28YPL065W LEU3P08638 886 aa9.77□□□□□ -0.85
VPS28YPL065W ASH1P34233 588 aa9.77□□□□□ -0.85
VPS28YPL065W KIP2P28743 706 aa9.74□□□□□ -0.85
VPS28YPL065W CSN12P47130 423 aa9.73□□□□□ -0.85
VPS28YPL065W TYW1Q08960 810 aaKnown RBP9.73□□□□□ -0.85
VPS28YPL065W YJU3P28321 313 aa9.7□□□□□ -0.86
VPS28YPL065W PKH3Q03306 898 aaPredicted RBP9.7□□□□□ -0.86
VPS28YPL065W IXR1P33417 597 aa9.69□□□□□ -0.86
VPS28YPL065W GBP2P25555 427 aaKnown RBP RIP-Chip data9.68□□□□□ -0.86not detected
VPS28YPL065W MSB3P48566 633 aaPredicted RBP9.67□□□□□ -0.86
VPS28YPL065W ARG8P18544 423 aa9.66□□□□□ -0.86
VPS28YPL065W KTR1P27810 393 aaKnown RBP9.66□□□□□ -0.86
VPS28YPL065W GAR1P28007 205 aaKnown RBP9.66□□□□□ -0.86
VPS28YPL065W RSC30P38781 883 aa9.66□□□□□ -0.86
VPS28YPL065W RGA1P39083 1007 aa9.66□□□□□ -0.86
VPS28YPL065W RPN1P38764 993 aaKnown RBP9.65□□□□□ -0.86
VPS28YPL065W ENV9Q08651 330 aa9.65□□□□□ -0.86
VPS28YPL065W SSA2P10592 639 aaKnown RBP9.64□□□□□ -0.87
VPS28YPL065W KIN1P13185 1064 aa9.64□□□□□ -0.87
VPS28YPL065W MET22P32179 357 aa9.64□□□□□ -0.87
VPS28YPL065W RTT106P40161 455 aa9.64□□□□□ -0.87
VPS28YPL065W UGA3P26370 528 aa9.63□□□□□ -0.87
VPS28YPL065W YJR115WP47152 169 aa9.62□□□□□ -0.87
VPS28YPL065W VAC17P25591 423 aa9.61□□□□□ -0.87
VPS28YPL065W YDR444WQ04093 687 aa9.61□□□□□ -0.87
VPS28YPL065W MRT4P33201 236 aaKnown RBP9.6□□□□□ -0.87
VPS28YPL065W YPL062WQ02781 134 aa9.58□□□□□ -0.88
VPS28YPL065W RAD59Q12223 238 aa9.58□□□□□ -0.88
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms