RNA–Protein interactions for RNA: YOR216C

RUD3, Transcript of Golgi matrix protein, yeast

Gene RUD3, Length 1,455 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUD3	YOR216C	TY1A-NL2	Q12470	440 aa		7.9	□□□□□ -1.14
RUD3	YOR216C	TY1A-GR2	Q12485	440 aa		7.9	□□□□□ -1.14
RUD3	YOR216C	NPL4	P33755	580 aa		7.89	□□□□□ -1.15
RUD3	YOR216C	VPS70	P47161	811 aa		7.89	□□□□□ -1.15
RUD3	YOR216C	SEC2	P17065	759 aa		7.88	□□□□□ -1.15
RUD3	YOR216C	AIR1	P40507	360 aa	Known RBP	7.88	□□□□□ -1.15
RUD3	YOR216C	MAK21	Q12176	1025 aa	Known RBP	7.88	□□□□□ -1.15
RUD3	YOR216C	GCR2	Q01722	534 aa		7.87	□□□□□ -1.15
RUD3	YOR216C	COX6	P00427	148 aa		7.87	□□□□□ -1.15
RUD3	YOR216C	MVP1	P40959	511 aa	Known RBP	7.86	□□□□□ -1.15
RUD3	YOR216C	CLA4	P48562	842 aa		7.85	□□□□□ -1.15
RUD3	YOR216C	GCD11	P32481	527 aa	Known RBP	7.84	□□□□□ -1.15
RUD3	YOR216C	SPT16	P32558	1035 aa	Known RBP	7.84	□□□□□ -1.15
RUD3	YOR216C	CDC4	P07834	779 aa		7.82	□□□□□ -1.16
RUD3	YOR216C	YPR109W	Q06104	294 aa		7.81	□□□□□ -1.16
RUD3	YOR216C	RGR1	P19263	1082 aa		7.81	□□□□□ -1.16
RUD3	YOR216C	BDP1	P46678	594 aa		7.77	□□□□□ -1.17
RUD3	YOR216C	PAT1	P25644	796 aa	Known RBP	7.76	□□□□□ -1.17
RUD3	YOR216C	RRN7	P40992	514 aa		7.76	□□□□□ -1.17
RUD3	YOR216C	HED1	Q03937	162 aa		7.76	□□□□□ -1.17
RUD3	YOR216C	FRK1	Q03002	865 aa	Predicted RBP	7.75	□□□□□ -1.17
RUD3	YOR216C	GAR1	P28007	205 aa	Known RBP	7.74	□□□□□ -1.17
RUD3	YOR216C	ENV9	Q08651	330 aa		7.72	□□□□□ -1.17
RUD3	YOR216C	MET22	P32179	357 aa		7.71	□□□□□ -1.18
RUD3	YOR216C	ERF2	Q06551	359 aa		7.71	□□□□□ -1.18
RUD3	YOR216C	KEX2	P13134	814 aa		7.7	□□□□□ -1.18
RUD3	YOR216C	MOD5	P07884	428 aa		7.68	□□□□□ -1.18
RUD3	YOR216C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	7.68	□□□□□ -1.18	not detected
RUD3	YOR216C	PBS2	P08018	668 aa		7.67	□□□□□ -1.18
RUD3	YOR216C	PSE1	P32337	1089 aa	Known RBP	7.65	□□□□□ -1.18
RUD3	YOR216C	CKB1	P43639	278 aa		7.64	□□□□□ -1.19
RUD3	YOR216C	AGE1	Q04412	482 aa		7.63	□□□□□ -1.19
RUD3	YOR216C	AFT1	P22149	690 aa		7.62	□□□□□ -1.19
RUD3	YOR216C	PAC1	P39946	494 aa	Known RBP	7.62	□□□□□ -1.19
RUD3	YOR216C	MET32	Q12041	191 aa		7.62	□□□□□ -1.19
RUD3	YOR216C	CLB5	P30283	435 aa		7.62	□□□□□ -1.19
RUD3	YOR216C	YDR444W	Q04093	687 aa		7.62	□□□□□ -1.19
RUD3	YOR216C	RTF1	P53064	558 aa		7.61	□□□□□ -1.19
RUD3	YOR216C	ASH1	P34233	588 aa		7.6	□□□□□ -1.19
RUD3	YOR216C	LCB5	Q06147	687 aa	Known RBP	7.6	□□□□□ -1.19
RUD3	YOR216C	TUB4	P53378	473 aa		7.57	□□□□□ -1.2
RUD3	YOR216C	YDL176W	Q12027	708 aa		7.57	□□□□□ -1.2
RUD3	YOR216C	MAM3	Q12296	706 aa		7.55	□□□□□ -1.2
RUD3	YOR216C	TPD3	P31383	635 aa		7.54	□□□□□ -1.2
RUD3	YOR216C	HST3	P53687	447 aa		7.54	□□□□□ -1.2
RUD3	YOR216C	SIT4	P20604	311 aa		7.53	□□□□□ -1.2
RUD3	YOR216C	PUS5	Q06244	254 aa		7.53	□□□□□ -1.2
RUD3	YOR216C	YNL115C	P53925	644 aa		7.52	□□□□□ -1.21
RUD3	YOR216C	IES2	P40154	320 aa		7.51	□□□□□ -1.21
RUD3	YOR216C	RRD1	P40454	393 aa	Known RBP	7.51	□□□□□ -1.21
RUD3	YOR216C	DSF2	P38213	736 aa		7.5	□□□□□ -1.21
RUD3	YOR216C	YJR115W	P47152	169 aa		7.48	□□□□□ -1.21
RUD3	YOR216C	NUP42	P49686	430 aa	Known RBP	7.48	□□□□□ -1.21
RUD3	YOR216C	MSB3	P48566	633 aa	Predicted RBP	7.47	□□□□□ -1.21
RUD3	YOR216C	TEA1	P47988	759 aa		7.46	□□□□□ -1.22
RUD3	YOR216C	KXD1	P53158	218 aa		7.45	□□□□□ -1.22
RUD3	YOR216C	NIS1	P53939	407 aa		7.45	□□□□□ -1.22
RUD3	YOR216C	SAS10	Q12136	610 aa	Predicted RBP	7.45	□□□□□ -1.22
RUD3	YOR216C	HXT10	P43581	546 aa		7.44	□□□□□ -1.22
RUD3	YOR216C	DIT2	P21595	489 aa		7.41	□□□□□ -1.22
RUD3	YOR216C	ACO2	P39533	789 aa		7.41	□□□□□ -1.22
RUD3	YOR216C	SYH1	Q02875	849 aa	Known RBP	7.41	□□□□□ -1.22
RUD3	YOR216C	PDC1	P06169	563 aa	Known RBP	7.4	□□□□□ -1.22
RUD3	YOR216C	SLY41	P22215	453 aa		7.36	□□□□□ -1.23
RUD3	YOR216C	FPK1	P53739	893 aa		7.36	□□□□□ -1.23
RUD3	YOR216C	DMA1	P38823	416 aa		7.36	□□□□□ -1.23
RUD3	YOR216C	SPB4	P25808	606 aa	Predicted RBP	7.35	□□□□□ -1.23
RUD3	YOR216C	RTT106	P40161	455 aa		7.35	□□□□□ -1.23
RUD3	YOR216C	MRT4	P33201	236 aa	Known RBP	7.34	□□□□□ -1.23
RUD3	YOR216C	PTK2	P47116	818 aa	Known RBP	7.34	□□□□□ -1.23
RUD3	YOR216C	RPA14	P50106	137 aa		7.34	□□□□□ -1.23
RUD3	YOR216C	YMR196W	Q04336	1088 aa		7.33	□□□□□ -1.24
RUD3	YOR216C	OPT2	Q06593	877 aa		7.33	□□□□□ -1.24
RUD3	YOR216C	YPR097W	Q06839	1073 aa		7.33	□□□□□ -1.24
RUD3	YOR216C	UGA3	P26370	528 aa		7.32	□□□□□ -1.24
RUD3	YOR216C	CAF120	P53836	1060 aa		7.32	□□□□□ -1.24
RUD3	YOR216C	YLR346C	Q06139	101 aa		7.31	□□□□□ -1.24
RUD3	YOR216C	GLY1	P37303	387 aa	Known RBP	7.3	□□□□□ -1.24
RUD3	YOR216C	PUS6	P53294	404 aa		7.3	□□□□□ -1.24
RUD3	YOR216C	ALR1	Q08269	859 aa		7.3	□□□□□ -1.24
RUD3	YOR216C	SCJ1	P25303	377 aa		7.3	□□□□□ -1.24
RUD3	YOR216C	NUP85	P46673	744 aa		7.3	□□□□□ -1.24
RUD3	YOR216C	YDL206W	Q12424	762 aa		7.3	□□□□□ -1.24
RUD3	YOR216C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	7.28	□□□□□ -1.24	not detected
RUD3	YOR216C	TBF1	Q02457	562 aa		7.27	□□□□□ -1.25
RUD3	YOR216C	MTC5	Q03897	1148 aa		7.27	□□□□□ -1.25
RUD3	YOR216C	SRF1	Q12516	437 aa		7.27	□□□□□ -1.25
RUD3	YOR216C	KIP2	P28743	706 aa		7.26	□□□□□ -1.25
RUD3	YOR216C	HST2	P53686	357 aa		7.26	□□□□□ -1.25
RUD3	YOR216C	TRM1	P15565	570 aa	Known RBP	7.25	□□□□□ -1.25
RUD3	YOR216C	TRK2	P28584	889 aa		7.25	□□□□□ -1.25
RUD3	YOR216C	IXR1	P33417	597 aa		7.24	□□□□□ -1.25
RUD3	YOR216C	TY1A-BL	Q12266	440 aa		7.23	□□□□□ -1.25
RUD3	YOR216C	SCW11	P53189	542 aa		7.22	□□□□□ -1.25
RUD3	YOR216C	YGR035C	P53222	116 aa		7.22	□□□□□ -1.25
RUD3	YOR216C	MMP1	Q12372	583 aa		7.22	□□□□□ -1.25
RUD3	YOR216C	MIP1	P15801	1254 aa		7.21	□□□□□ -1.26
RUD3	YOR216C	YIR007W	P40566	764 aa		7.21	□□□□□ -1.26
RUD3	YOR216C	TYW1	Q08960	810 aa	Known RBP	7.21	□□□□□ -1.26
RUD3	YOR216C	ESS1	P22696	170 aa		7.18	□□□□□ -1.26

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms