RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeastyeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DDR48YMR173W AIR1P40507 360 aaKnown RBP7.36□□□□□ -1.23
DDR48YMR173W SEC2P17065 759 aa7.35□□□□□ -1.23
DDR48YMR173W GCD11P32481 527 aaKnown RBP7.35□□□□□ -1.23
DDR48YMR173W CLA4P48562 842 aa7.34□□□□□ -1.23
DDR48YMR173W LAM6Q08001 693 aa7.33□□□□□ -1.24
DDR48YMR173W COX6P00427 148 aa7.32□□□□□ -1.24
DDR48YMR173W SPT16P32558 1035 aaKnown RBP7.32□□□□□ -1.24
DDR48YMR173W MVP1P40959 511 aaKnown RBP7.32□□□□□ -1.24
DDR48YMR173W BRE2P43132 505 aa7.32□□□□□ -1.24
DDR48YMR173W VPS70P47161 811 aa7.31□□□□□ -1.24
DDR48YMR173W YPL062WQ02781 134 aa7.31□□□□□ -1.24
DDR48YMR173W MAK21Q12176 1025 aaKnown RBP7.31□□□□□ -1.24
DDR48YMR173W YPR109WQ06104 294 aa7.28□□□□□ -1.24
DDR48YMR173W RGR1P19263 1082 aa7.27□□□□□ -1.25
DDR48YMR173W GCR2Q01722 534 aa7.27□□□□□ -1.25
DDR48YMR173W FRK1Q03002 865 aaPredicted RBP7.27□□□□□ -1.25
DDR48YMR173W RRN7P40992 514 aa7.26□□□□□ -1.25
DDR48YMR173W CDC4P07834 779 aa7.24□□□□□ -1.25
DDR48YMR173W BDP1P46678 594 aa7.24□□□□□ -1.25
DDR48YMR173W GAR1P28007 205 aaKnown RBP7.22□□□□□ -1.25
DDR48YMR173W PAT1P25644 796 aaKnown RBP7.21□□□□□ -1.26
DDR48YMR173W ERF2Q06551 359 aa7.2□□□□□ -1.26
DDR48YMR173W KEX2P13134 814 aa7.19□□□□□ -1.26
DDR48YMR173W HED1Q03937 162 aa7.19□□□□□ -1.26
DDR48YMR173W GBP2P25555 427 aaKnown RBP RIP-Chip data7.16□□□□□ -1.26not detected
DDR48YMR173W MET22P32179 357 aa7.14□□□□□ -1.27
DDR48YMR173W PAC1P39946 494 aaKnown RBP7.13□□□□□ -1.27
DDR48YMR173W MOD5P07884 428 aa7.12□□□□□ -1.27
DDR48YMR173W PSE1P32337 1089 aaKnown RBP7.11□□□□□ -1.27
DDR48YMR173W ENV9Q08651 330 aa7.11□□□□□ -1.27
DDR48YMR173W AGE1Q04412 482 aa7.1□□□□□ -1.27
DDR48YMR173W PBS2P08018 668 aa7.09□□□□□ -1.27
DDR48YMR173W MET32Q12041 191 aa7.09□□□□□ -1.27
DDR48YMR173W CKB1P43639 278 aa7.08□□□□□ -1.28
DDR48YMR173W TUB4P53378 473 aa7.08□□□□□ -1.28
DDR48YMR173W CLB5P30283 435 aa7.07□□□□□ -1.28
DDR48YMR173W ASH1P34233 588 aa7.07□□□□□ -1.28
DDR48YMR173W YDR444WQ04093 687 aa7.06□□□□□ -1.28
DDR48YMR173W AFT1P22149 690 aa7.05□□□□□ -1.28
DDR48YMR173W PUS5Q06244 254 aa7.05□□□□□ -1.28
DDR48YMR173W RTF1P53064 558 aa7.04□□□□□ -1.28
DDR48YMR173W HST3P53687 447 aa7.02□□□□□ -1.29
DDR48YMR173W YNL115CP53925 644 aa7.01□□□□□ -1.29
DDR48YMR173W LCB5Q06147 687 aaKnown RBP7.01□□□□□ -1.29
DDR48YMR173W MAM3Q12296 706 aa7.01□□□□□ -1.29
DDR48YMR173W SIT4P20604 311 aa6.99□□□□□ -1.29
DDR48YMR173W YDL176WQ12027 708 aa6.98□□□□□ -1.29
DDR48YMR173W IES2P40154 320 aa6.96□□□□□ -1.3
DDR48YMR173W RRD1P40454 393 aaKnown RBP6.96□□□□□ -1.3
DDR48YMR173W YJR115WP47152 169 aa6.96□□□□□ -1.3
DDR48YMR173W TPD3P31383 635 aa6.95□□□□□ -1.3
DDR48YMR173W DSF2P38213 736 aa6.95□□□□□ -1.3
DDR48YMR173W TEA1P47988 759 aa6.94□□□□□ -1.3
DDR48YMR173W KXD1P53158 218 aa6.94□□□□□ -1.3
DDR48YMR173W NUP42P49686 430 aaKnown RBP6.93□□□□□ -1.3
DDR48YMR173W NIS1P53939 407 aa6.93□□□□□ -1.3
DDR48YMR173W HXT10P43581 546 aa6.92□□□□□ -1.3
DDR48YMR173W PDC1P06169 563 aaKnown RBP6.9□□□□□ -1.3
DDR48YMR173W MSB3P48566 633 aaPredicted RBP6.89□□□□□ -1.31
DDR48YMR173W SYH1Q02875 849 aaKnown RBP6.89□□□□□ -1.31
DDR48YMR173W SAS10Q12136 610 aaPredicted RBP6.87□□□□□ -1.31
DDR48YMR173W SLY41P22215 453 aa6.86□□□□□ -1.31
DDR48YMR173W DIT2P21595 489 aa6.85□□□□□ -1.31
DDR48YMR173W FPK1P53739 893 aa6.85□□□□□ -1.31
DDR48YMR173W UGA3P26370 528 aa6.82□□□□□ -1.32
DDR48YMR173W ACO2P39533 789 aa6.82□□□□□ -1.32
DDR48YMR173W PTK2P47116 818 aaKnown RBP6.82□□□□□ -1.32
DDR48YMR173W RPA14P50106 137 aa6.82□□□□□ -1.32
DDR48YMR173W YMR196WQ04336 1088 aa6.82□□□□□ -1.32
DDR48YMR173W CAF120P53836 1060 aa6.81□□□□□ -1.32
DDR48YMR173W YPR097WQ06839 1073 aa6.81□□□□□ -1.32
DDR48YMR173W ALR1Q08269 859 aa6.81□□□□□ -1.32
DDR48YMR173W YDL206WQ12424 762 aa6.81□□□□□ -1.32
DDR48YMR173W PUS6P53294 404 aa6.8□□□□□ -1.32
DDR48YMR173W OPT2Q06593 877 aa6.8□□□□□ -1.32
DDR48YMR173W KIP2P28743 706 aa6.79□□□□□ -1.32
DDR48YMR173W SPB4P25808 606 aaPredicted RBP6.78□□□□□ -1.32
DDR48YMR173W MRT4P33201 236 aaKnown RBP6.78□□□□□ -1.32
DDR48YMR173W IXR1P33417 597 aa6.78□□□□□ -1.32
DDR48YMR173W TBF1Q02457 562 aa6.78□□□□□ -1.32
DDR48YMR173W SRF1Q12516 437 aa6.78□□□□□ -1.32
DDR48YMR173W SCJ1P25303 377 aa6.77□□□□□ -1.33
DDR48YMR173W YLR346CQ06139 101 aa6.77□□□□□ -1.33
DDR48YMR173W TRM1P15565 570 aaKnown RBP6.76□□□□□ -1.33
DDR48YMR173W HST2P53686 357 aa6.76□□□□□ -1.33
DDR48YMR173W BUB1P41695 1021 aaKnown RBP RIP-Chip data6.75□□□□□ -1.33not detected
DDR48YMR173W NUP85P46673 744 aa6.75□□□□□ -1.33
DDR48YMR173W GLY1P37303 387 aaKnown RBP6.73□□□□□ -1.33
DDR48YMR173W TYW1Q08960 810 aaKnown RBP6.72□□□□□ -1.33
DDR48YMR173W DMA1P38823 416 aa6.71□□□□□ -1.34
DDR48YMR173W RTT106P40161 455 aa6.71□□□□□ -1.34
DDR48YMR173W MMP1Q12372 583 aa6.71□□□□□ -1.34
DDR48YMR173W YIR007WP40566 764 aa6.69□□□□□ -1.34
DDR48YMR173W SCW11P53189 542 aa6.69□□□□□ -1.34
DDR48YMR173W TY1A-BLQ12266 440 aa6.69□□□□□ -1.34
DDR48YMR173W MIP1P15801 1254 aa6.68□□□□□ -1.34
DDR48YMR173W TRK2P28584 889 aa6.68□□□□□ -1.34
DDR48YMR173W YGR035CP53222 116 aa6.68□□□□□ -1.34
DDR48YMR173W VAC17P25591 423 aa6.67□□□□□ -1.34
DDR48YMR173W GLN1P32288 370 aaKnown RBP6.67□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms