RNA–Protein interactions for RNA: YIL076W

SEC28, Transcript of Epsilon-COP subunit of the coatomer, yeastyeast

Gene SEC28, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC28YIL076W TY1A-LR1P0CX68 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-MR2P0CX69 440 aa9.29□□□□□ -0.92
SEC28YIL076W GCD11P32481 527 aaKnown RBP9.29□□□□□ -0.92
SEC28YIL076W GLC3P32775 704 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-JR2P47099 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-DR1Q03856 440 aa9.29□□□□□ -0.92
SEC28YIL076W SAS4Q04003 481 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-ML1Q04706 440 aaKnown RBP9.29□□□□□ -0.92
SEC28YIL076W TY1A-BRQ12217 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-NL2Q12470 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-GR2Q12485 440 aa9.29□□□□□ -0.92
SEC28YIL076W LEU3P08638 886 aa9.28□□□□□ -0.92
SEC28YIL076W DPS1P04802 557 aaKnown RBP9.27□□□□□ -0.93
SEC28YIL076W KEX2P13134 814 aa9.27□□□□□ -0.93
SEC28YIL076W SEC2P17065 759 aa9.27□□□□□ -0.93
SEC28YIL076W ATF2P53296 535 aa9.25□□□□□ -0.93
SEC28YIL076W ERF2Q06551 359 aa9.25□□□□□ -0.93
SEC28YIL076W SDH2P21801 266 aa9.24□□□□□ -0.93
SEC28YIL076W NIS1P53939 407 aa9.24□□□□□ -0.93
SEC28YIL076W SIT4P20604 311 aa9.19□□□□□ -0.94
SEC28YIL076W MRF1P30775 413 aaPredicted RBP9.17□□□□□ -0.94
SEC28YIL076W SPT16P32558 1035 aaKnown RBP9.17□□□□□ -0.94
SEC28YIL076W RRN7P40992 514 aa9.17□□□□□ -0.94
SEC28YIL076W RTF1P53064 558 aa9.17□□□□□ -0.94
SEC28YIL076W FPK1P53739 893 aa9.17□□□□□ -0.94
SEC28YIL076W YMR196WQ04336 1088 aa9.17□□□□□ -0.94
SEC28YIL076W AIM7Q12156 149 aa9.17□□□□□ -0.94
SEC28YIL076W YNL115CP53925 644 aa9.16□□□□□ -0.94
SEC28YIL076W RAS1P01119 309 aa9.15□□□□□ -0.94
SEC28YIL076W AMS1P22855 1083 aa9.15□□□□□ -0.94
SEC28YIL076W YEL077CQ3E7X8 1277 aa9.14□□□□□ -0.95
SEC28YIL076W ERG12P07277 443 aa9.12□□□□□ -0.95
SEC28YIL076W PAT1P25644 796 aaKnown RBP9.12□□□□□ -0.95
SEC28YIL076W AGE1Q04412 482 aa9.12□□□□□ -0.95
SEC28YIL076W PAC1P39946 494 aaKnown RBP9.1□□□□□ -0.95
SEC28YIL076W TUB4P53378 473 aa9.1□□□□□ -0.95
SEC28YIL076W SLY41P22215 453 aa9.09□□□□□ -0.95
SEC28YIL076W HST2P53686 357 aa9.09□□□□□ -0.95
SEC28YIL076W SCJ1P25303 377 aa9.08□□□□□ -0.96
SEC28YIL076W RPN1P38764 993 aaKnown RBP9.08□□□□□ -0.96
SEC28YIL076W KIN1P13185 1064 aa9.06□□□□□ -0.96
SEC28YIL076W CST6P40535 587 aa9.06□□□□□ -0.96
SEC28YIL076W MMP1Q12372 583 aa9.06□□□□□ -0.96
SEC28YIL076W GLN1P32288 370 aaKnown RBP9.05□□□□□ -0.96
SEC28YIL076W TYW1Q08960 810 aaKnown RBP9.04□□□□□ -0.96
SEC28YIL076W FRK1Q03002 865 aaPredicted RBP9.03□□□□□ -0.96
SEC28YIL076W SRC1Q03707 834 aa9.03□□□□□ -0.96
SEC28YIL076W ESS1P22696 170 aa9.02□□□□□ -0.97
SEC28YIL076W LAM6Q08001 693 aa9.02□□□□□ -0.97
SEC28YIL076W KTR1P27810 393 aaKnown RBP9.01□□□□□ -0.97
SEC28YIL076W BDP1P46678 594 aa9.01□□□□□ -0.97
SEC28YIL076W CSN12P47130 423 aa9□□□□□ -0.97
SEC28YIL076W TRM1P15565 570 aaKnown RBP8.98□□□□□ -0.97
SEC28YIL076W TBF1Q02457 562 aa8.98□□□□□ -0.97
SEC28YIL076W MOD5P07884 428 aa8.97□□□□□ -0.97
SEC28YIL076W YJU3P28321 313 aa8.97□□□□□ -0.97
SEC28YIL076W PUS6P53294 404 aa8.97□□□□□ -0.97
SEC28YIL076W CLA4P48562 842 aa8.95□□□□□ -0.98
SEC28YIL076W KXD1P53158 218 aa8.95□□□□□ -0.98
SEC28YIL076W PKH3Q03306 898 aaPredicted RBP8.95□□□□□ -0.98
SEC28YIL076W YDL206WQ12424 762 aa8.95□□□□□ -0.98
SEC28YIL076W PDC1P06169 563 aaKnown RBP8.93□□□□□ -0.98
SEC28YIL076W BUB1P41695 1021 aaKnown RBP RIP-Chip data8.93□□□□□ -0.98not detected
SEC28YIL076W AIR1P40507 360 aaKnown RBP8.91□□□□□ -0.98
SEC28YIL076W HXT10P43581 546 aa8.91□□□□□ -0.98
SEC28YIL076W RPA14P50106 137 aa8.91□□□□□ -0.98
SEC28YIL076W TRK1P12685 1235 aa8.9□□□□□ -0.98
SEC28YIL076W RRD1P40454 393 aaKnown RBP8.9□□□□□ -0.98
SEC28YIL076W PUS5Q06244 254 aa8.9□□□□□ -0.98
SEC28YIL076W ALR1Q08269 859 aa8.9□□□□□ -0.98
SEC28YIL076W TPD3P31383 635 aa8.89□□□□□ -0.99
SEC28YIL076W SSA2P10592 639 aaKnown RBP8.88□□□□□ -0.99
SEC28YIL076W GUA1P38625 525 aaKnown RBP8.88□□□□□ -0.99
SEC28YIL076W RSC30P38781 883 aa8.88□□□□□ -0.99
SEC28YIL076W ARG8P18544 423 aa8.87□□□□□ -0.99
SEC28YIL076W YPR097WQ06839 1073 aa8.87□□□□□ -0.99
SEC28YIL076W HED1Q03937 162 aa8.86□□□□□ -0.99
SEC28YIL076W RAD59Q12223 238 aa8.86□□□□□ -0.99
SEC28YIL076W CDC4P07834 779 aa8.81□□□□□ -1
SEC28YIL076W HPC2Q01448 625 aa8.77□□□□□ -1.01
SEC28YIL076W SYH1Q02875 849 aaKnown RBP8.77□□□□□ -1.01
SEC28YIL076W MET32Q12041 191 aa8.77□□□□□ -1.01
SEC28YIL076W KIP2P28743 706 aa8.76□□□□□ -1.01
SEC28YIL076W LEO1P38439 464 aa8.75□□□□□ -1.01
SEC28YIL076W IXR1P33417 597 aa8.73□□□□□ -1.01
SEC28YIL076W TFB3Q03290 321 aa8.73□□□□□ -1.01
SEC28YIL076W VAC17P25591 423 aa8.72□□□□□ -1.01
SEC28YIL076W BRL1P38770 471 aa8.71□□□□□ -1.02
SEC28YIL076W BRE2P43132 505 aa8.71□□□□□ -1.02
SEC28YIL076W ASH1P34233 588 aa8.7□□□□□ -1.02
SEC28YIL076W MAK16P10962 306 aaPredicted RBP8.69□□□□□ -1.02
SEC28YIL076W AFT1P22149 690 aa8.68□□□□□ -1.02
SEC28YIL076W FIG4P42837 879 aa8.68□□□□□ -1.02
SEC28YIL076W HST3P53687 447 aa8.68□□□□□ -1.02
SEC28YIL076W PKC1P24583 1151 aa8.67□□□□□ -1.02
SEC28YIL076W YBL036CP38197 257 aa8.66□□□□□ -1.02
SEC28YIL076W GCR2Q01722 534 aa8.66□□□□□ -1.02
SEC28YIL076W ITT1Q04638 464 aa8.65□□□□□ -1.02
SEC28YIL076W TEC1P18412 486 aa8.64□□□□□ -1.03
SEC28YIL076W CSE4P36012 229 aa8.63□□□□□ -1.03
Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms