RNA–Protein interactions for RNA: YDR054C

CDC34, Transcript of Ubiquitin-conjugating enzyme (E2), yeastyeast

Gene CDC34, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC34YDR054C DNF3Q12674 1656 aa8.39□□□□□ -1.07
CDC34YDR054C RSM7P47150 247 aa8.38□□□□□ -1.07
CDC34YDR054C CST9Q06032 482 aa8.38□□□□□ -1.07
CDC34YDR054C KIN1P13185 1064 aa8.35□□□□□ -1.07
CDC34YDR054C SET1P38827 1080 aaKnown RBP8.35□□□□□ -1.07
CDC34YDR054C YPR148CQ06523 435 aa8.35□□□□□ -1.07
CDC34YDR054C TAF5P38129 798 aa8.33□□□□□ -1.08
CDC34YDR054C MAK10Q02197 733 aa8.33□□□□□ -1.08
CDC34YDR054C NUP192P47054 1683 aa8.32□□□□□ -1.08
CDC34YDR054C HAP1P0CE41 1502 aa8.32□□□□□ -1.08
CDC34YDR054C YML020WQ03722 664 aa8.31□□□□□ -1.08
CDC34YDR054C MIF2P35201 549 aa8.3□□□□□ -1.08
CDC34YDR054C ORC1P54784 914 aaPredicted RBP8.3□□□□□ -1.08
CDC34YDR054C RAD9P14737 1309 aa8.29□□□□□ -1.08
CDC34YDR054C YNR021WP53723 404 aaKnown RBP8.29□□□□□ -1.08
CDC34YDR054C KRE5P22023 1365 aa8.28□□□□□ -1.08
CDC34YDR054C POL5P39985 1022 aaKnown RBP8.28□□□□□ -1.08
CDC34YDR054C DSF2P38213 736 aa8.27□□□□□ -1.09
CDC34YDR054C CAB1Q04430 367 aa8.27□□□□□ -1.09
CDC34YDR054C BCK1Q01389 1478 aa8.26□□□□□ -1.09
CDC34YDR054C ESL2P36168 1195 aa8.26□□□□□ -1.09
CDC34YDR054C ALD4P46367 519 aaKnown RBP8.26□□□□□ -1.09
CDC34YDR054C TY3B-IQ7LHG5 1498 aaKnown RBP8.26□□□□□ -1.09
CDC34YDR054C IOC4Q04213 475 aa8.25□□□□□ -1.09
CDC34YDR054C KIP3P53086 805 aaKnown RBP8.24□□□□□ -1.09
CDC34YDR054C YLR419WQ06698 1435 aaKnown RBP8.23□□□□□ -1.09
CDC34YDR054C RAM2P29703 316 aa8.23□□□□□ -1.09
CDC34YDR054C PSD2P53037 1138 aaKnown RBP8.23□□□□□ -1.09
CDC34YDR054C RIA1P53893 1110 aa8.23□□□□□ -1.09
CDC34YDR054C PBS2P08018 668 aa8.22□□□□□ -1.09
CDC34YDR054C MRX12P47084 519 aa8.22□□□□□ -1.09
CDC34YDR054C TAF8Q03750 510 aa8.22□□□□□ -1.09
CDC34YDR054C NOP8Q08287 484 aaPredicted RBP8.22□□□□□ -1.09
CDC34YDR054C CFT1Q06632 1357 aaKnown RBP8.22□□□□□ -1.09
CDC34YDR054C AIM7Q12156 149 aa8.21□□□□□ -1.1
CDC34YDR054C SPE2P21182 396 aa8.19□□□□□ -1.1
CDC34YDR054C GLC3P32775 704 aa8.19□□□□□ -1.1
CDC34YDR054C SLX8P40072 274 aa8.19□□□□□ -1.1
CDC34YDR054C SSA1P10591 642 aaKnown RBP8.18□□□□□ -1.1
CDC34YDR054C YKR023WP36119 530 aaKnown RBP8.16□□□□□ -1.1
CDC34YDR054C GEF1P37020 779 aa8.16□□□□□ -1.1
CDC34YDR054C MHP1P43638 1398 aa8.15□□□□□ -1.1
CDC34YDR054C AI2P03876 854 aa8.15□□□□□ -1.1
CDC34YDR054C YNR029CP53729 429 aaKnown RBP8.15□□□□□ -1.1
CDC34YDR054C THI12P42883 340 aa8.14□□□□□ -1.11
CDC34YDR054C THI5P43534 340 aa8.14□□□□□ -1.11
CDC34YDR054C THI11P47183 340 aa8.14□□□□□ -1.11
CDC34YDR054C THI13Q07748 340 aa8.14□□□□□ -1.11
CDC34YDR054C MAM3Q12296 706 aa8.13□□□□□ -1.11
CDC34YDR054C GUA1P38625 525 aaKnown RBP8.12□□□□□ -1.11
CDC34YDR054C RCM1P53972 490 aa8.12□□□□□ -1.11
CDC34YDR054C PPH3P32345 308 aa8.1□□□□□ -1.11
CDC34YDR054C YMR196WQ04336 1088 aa8.1□□□□□ -1.11
CDC34YDR054C TY1B-NL2Q99337 1749 aaKnown RBP8.09□□□□□ -1.11
CDC34YDR054C SPT7P35177 1332 aa8.09□□□□□ -1.11
CDC34YDR054C YGL015CP33199 130 aa8.09□□□□□ -1.11
CDC34YDR054C CHZ1P40019 153 aaPredicted RBP8.09□□□□□ -1.11
CDC34YDR054C YFR006WP43590 535 aa8.09□□□□□ -1.11
CDC34YDR054C PDS5Q04264 1277 aa8.09□□□□□ -1.11
CDC34YDR054C USO1P25386 1790 aa8.09□□□□□ -1.11
CDC34YDR054C CDC27P38042 758 aa8.08□□□□□ -1.12
CDC34YDR054C IES2P40154 320 aa8.08□□□□□ -1.12
CDC34YDR054C HPC2Q01448 625 aa8.08□□□□□ -1.12
CDC34YDR054C MAK21Q12176 1025 aaKnown RBP8.08□□□□□ -1.12
CDC34YDR054C YML133CQ03099 1374 aa8.08□□□□□ -1.12
CDC34YDR054C YLL067CQ07888 1374 aa8.08□□□□□ -1.12
CDC34YDR054C YLL066CQ99208 1374 aa8.08□□□□□ -1.12
CDC34YDR054C CPS1P27614 576 aa8.06□□□□□ -1.12
CDC34YDR054C RTG3P38165 486 aa8.06□□□□□ -1.12
CDC34YDR054C BBC1P47068 1157 aa8.06□□□□□ -1.12
CDC34YDR054C NST1P53935 1240 aa8.06□□□□□ -1.12
CDC34YDR054C SUB2Q07478 446 aaKnown RBP8.06□□□□□ -1.12
CDC34YDR054C PSK1P31374 1356 aa8.06□□□□□ -1.12
CDC34YDR054C FKH1P40466 484 aa8.04□□□□□ -1.12
CDC34YDR054C SEC3P33332 1336 aaKnown RBP8.03□□□□□ -1.12
CDC34YDR054C ATF2P53296 535 aa8.03□□□□□ -1.12
CDC34YDR054C HOP09932 586 aa8.02□□□□□ -1.13
CDC34YDR054C MAK11P20484 414 aaKnown RBP8.02□□□□□ -1.13
CDC34YDR054C DIT2P21595 489 aa8.02□□□□□ -1.13
CDC34YDR054C TFB3Q03290 321 aa8.02□□□□□ -1.13
CDC34YDR054C BRL1P38770 471 aa8.01□□□□□ -1.13
CDC34YDR054C TFC8Q12308 588 aa8.01□□□□□ -1.13
CDC34YDR054C SCT1P32784 759 aa8□□□□□ -1.13
CDC34YDR054C SLD2P34252 453 aa8□□□□□ -1.13
CDC34YDR054C NUP42P49686 430 aaKnown RBP8□□□□□ -1.13
CDC34YDR054C SNU71P53207 620 aaKnown RBP8□□□□□ -1.13
CDC34YDR054C RCR1P38212 213 aa7.98□□□□□ -1.13
CDC34YDR054C REF2P42073 533 aaPredicted RBP7.98□□□□□ -1.13
CDC34YDR054C ADE6P38972 1358 aaKnown RBP7.97□□□□□ -1.13
CDC34YDR054C LEU2P04173 364 aaPredicted RBP7.96□□□□□ -1.14
CDC34YDR054C YEF3P16521 1044 aaKnown RBP7.96□□□□□ -1.14
CDC34YDR054C SSA4P22202 642 aaKnown RBP7.96□□□□□ -1.14
CDC34YDR054C MRM1P25270 412 aa7.96□□□□□ -1.14
CDC34YDR054C RPS24AP0CX31 135 aaKnown RBP7.95□□□□□ -1.14
CDC34YDR054C RPS24BP0CX32 135 aaKnown RBP7.95□□□□□ -1.14
CDC34YDR054C NSR1P27476 414 aaKnown RBP RIP-Chip data7.95□□□□□ -1.14not detected
CDC34YDR054C TRK1P12685 1235 aa7.94□□□□□ -1.14
CDC34YDR054C MTR4P47047 1073 aaKnown RBP7.94□□□□□ -1.14
CDC34YDR054C CSE4P36012 229 aa7.93□□□□□ -1.14
CDC34YDR054C DCD1P06773 312 aa7.92□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 65.2 ms