RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 CDC42BPAQ5VT25 1732 aa7.5□□□□□ -1.21
SCN3A-210ENST00000640652 TARBP1Q13395 1621 aaKnown RBP7.49□□□□□ -1.21
SCN3A-210ENST00000640652 CNTLNQ9NXG0 1405 aa7.49□□□□□ -1.21
SCN3A-210ENST00000640652 CFDP1Q9UEE9 299 aaPredicted RBP7.49□□□□□ -1.21
SCN3A-210ENST00000640652 NAIPQ13075 1403 aa7.49□□□□□ -1.21
SCN3A-210ENST00000640652 KIAA0556O60303 1618 aa7.49□□□□□ -1.21
SCN3A-210ENST00000640652 URB2Q14146 1524 aaKnown RBP7.49□□□□□ -1.21
SCN3A-210ENST00000640652 ZNF777Q9ULD5 760 aaPredicted RBP7.49□□□□□ -1.21
SCN3A-210ENST00000640652 TMC1Q8TDI8 760 aa7.48□□□□□ -1.21
SCN3A-210ENST00000640652 PPP4R2Q9NY27 417 aa7.48□□□□□ -1.21
SCN3A-210ENST00000640652 CHMP7Q8WUX9 453 aaPredicted RBP7.48□□□□□ -1.21
SCN3A-210ENST00000640652 ANKRD30AQ9BXX3 1397 aa7.47□□□□□ -1.21
SCN3A-210ENST00000640652 ZBED9Q6R2W3 1325 aa7.47□□□□□ -1.21
SCN3A-210ENST00000640652 FBLN2P98095 1184 aa7.47□□□□□ -1.21
SCN3A-210ENST00000640652 CCDC136Q96JN2 1154 aa7.47□□□□□ -1.21
SCN3A-210ENST00000640652 ROCK1Q13464 1354 aa7.46□□□□□ -1.21
SCN3A-210ENST00000640652 IFT140Q96RY7 1462 aa7.46□□□□□ -1.21
SCN3A-210ENST00000640652 TSHZ2Q9NRE2 1034 aa7.46□□□□□ -1.21
SCN3A-210ENST00000640652 ADCY10Q96PN6 1610 aa7.46□□□□□ -1.21
SCN3A-210ENST00000640652 TSPY4P0CV99 314 aa7.46□□□□□ -1.21
SCN3A-210ENST00000640652 TSPY10P0CW01 314 aa7.46□□□□□ -1.21
SCN3A-210ENST00000640652 MPHOSPH9Q99550 1183 aa7.46□□□□□ -1.21
SCN3A-210ENST00000640652 CDK13Q14004 1512 aaKnown RBP7.46□□□□□ -1.22
SCN3A-210ENST00000640652 KIF1BO60333 1816 aa7.46□□□□□ -1.22
SCN3A-210ENST00000640652 CNGB1Q14028 1251 aaPredicted RBP7.46□□□□□ -1.22
SCN3A-210ENST00000640652 TCOF1Q13428 1488 aaKnown RBP7.45□□□□□ -1.22
SCN3A-210ENST00000640652 HSPA5P11021 654 aaKnown RBP7.45□□□□□ -1.22
SCN3A-210ENST00000640652 RBM19Q9Y4C8 960 aaKnown RBP7.44□□□□□ -1.22
SCN3A-210ENST00000640652 EIF4G3O43432 1585 aaKnown RBP7.44□□□□□ -1.22
SCN3A-210ENST00000640652 EIF2AK4Q9P2K8 1649 aaKnown RBP7.44□□□□□ -1.22
SCN3A-210ENST00000640652 DAPK1P53355 1430 aa7.44□□□□□ -1.22
SCN3A-210ENST00000640652 CAMSAP2Q08AD1 1489 aa7.44□□□□□ -1.22
SCN3A-210ENST00000640652 MAGI1Q96QZ7 1491 aaPredicted RBP7.44□□□□□ -1.22
SCN3A-210ENST00000640652 KTN1Q86UP2 1357 aaKnown RBP7.43□□□□□ -1.22
SCN3A-210ENST00000640652 PLEKHD1A6NEE1 506 aa7.43□□□□□ -1.22
SCN3A-210ENST00000640652 VIRMAQ69YN4 1812 aaKnown RBP7.43□□□□□ -1.22
SCN3A-210ENST00000640652 USP47Q96K76 1375 aa7.43□□□□□ -1.22
SCN3A-210ENST00000640652 KCNH8Q96L42 1107 aa7.43□□□□□ -1.22
SCN3A-210ENST00000640652 ARID4BQ4LE39 1312 aaPredicted RBP7.42□□□□□ -1.22
SCN3A-210ENST00000640652 RPRD2Q5VT52 1461 aaKnown RBP7.42□□□□□ -1.22
SCN3A-210ENST00000640652 KIF15Q9NS87 1388 aa7.42□□□□□ -1.22
SCN3A-210ENST00000640652 KIAA0586Q9BVV6 1533 aa7.41□□□□□ -1.22
SCN3A-210ENST00000640652 CCDC7Q96M83 1385 aa7.41□□□□□ -1.22
SCN3A-210ENST00000640652 IRX6P78412 446 aaPredicted RBP7.41□□□□□ -1.22
SCN3A-210ENST00000640652 CARD11Q9BXL7 1154 aa7.41□□□□□ -1.22
SCN3A-210ENST00000640652 ARHGEF12Q9NZN5 1544 aa7.41□□□□□ -1.22
SCN3A-210ENST00000640652 L3MBTL2Q969R5 705 aa7.4□□□□□ -1.22
SCN3A-210ENST00000640652 RALBP1Q15311 655 aa7.4□□□□□ -1.23
SCN3A-210ENST00000640652 ARHGEF11O15085 1522 aa7.39□□□□□ -1.23
SCN3A-210ENST00000640652 FANCIQ9NVI1 1328 aa7.39□□□□□ -1.23
SCN3A-210ENST00000640652 TROQ12816 1431 aaPredicted RBP7.39□□□□□ -1.23
SCN3A-210ENST00000640652 ZBTB47Q9UFB7 747 aaPredicted RBP7.39□□□□□ -1.23
SCN3A-210ENST00000640652 NCOA1Q15788 1441 aa7.39□□□□□ -1.23
SCN3A-210ENST00000640652 NUP155O75694 1391 aa7.39□□□□□ -1.23
SCN3A-210ENST00000640652 GRIN2AQ12879 1464 aa7.38□□□□□ -1.23
SCN3A-210ENST00000640652 CDCA8Q53HL2 280 aa7.38□□□□□ -1.23
SCN3A-210ENST00000640652 CCDC144AA2RUR9 1427 aa7.38□□□□□ -1.23
SCN3A-210ENST00000640652 WASHC2AQ641Q2 1341 aa7.38□□□□□ -1.23
SCN3A-210ENST00000640652 PRKRIP1Q9H875 184 aaPredicted RBP7.38□□□□□ -1.23
SCN3A-210ENST00000640652 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.38□□□□□ -1.23
SCN3A-210ENST00000640652 SYNJ2O15056 1496 aa7.38□□□□□ -1.23
SCN3A-210ENST00000640652 SHANK2Q9UPX8 1470 aa7.38□□□□□ -1.23
SCN3A-210ENST00000640652 SLC24A1O60721 1099 aa7.38□□□□□ -1.23
SCN3A-210ENST00000640652 C9orf84Q5VXU9 1444 aa7.37□□□□□ -1.23
SCN3A-210ENST00000640652 KIAA1107Q9UPP5 1409 aa7.37□□□□□ -1.23
SCN3A-210ENST00000640652 NOP58Q9Y2X3 529 aaKnown RBP7.37□□□□□ -1.23
SCN3A-210ENST00000640652 CHD1O14646 1710 aa7.37□□□□□ -1.23
SCN3A-210ENST00000640652 EIF3AQ14152 1382 aaKnown RBP7.37□□□□□ -1.23
SCN3A-210ENST00000640652 ANKRD50Q9ULJ7 1429 aa7.37□□□□□ -1.23
SCN3A-210ENST00000640652 FOXD1Q16676 465 aa7.37□□□□□ -1.23
SCN3A-210ENST00000640652 RSPH4AQ5TD94 716 aa7.37□□□□□ -1.23
SCN3A-210ENST00000640652 KDM5CP41229 1560 aa7.36□□□□□ -1.23
SCN3A-210ENST00000640652 KDM5AP29375 1690 aaKnown RBP7.36□□□□□ -1.23
SCN3A-210ENST00000640652 PREX2Q70Z35 1606 aa7.36□□□□□ -1.23
SCN3A-210ENST00000640652 CDC42BPBQ9Y5S2 1711 aa7.36□□□□□ -1.23
SCN3A-210ENST00000640652 CEP152O94986 1710 aa7.36□□□□□ -1.23
SCN3A-210ENST00000640652 PKD2Q13563 968 aa7.36□□□□□ -1.23
SCN3A-210ENST00000640652 CANXP27824 592 aaKnown RBP7.36□□□□□ -1.23
SCN3A-210ENST00000640652 SHROOM2Q13796 1616 aa7.36□□□□□ -1.23
SCN3A-210ENST00000640652 DDRGK1Q96HY6 314 aa7.36□□□□□ -1.23
SCN3A-210ENST00000640652 WDR43Q15061 677 aaKnown RBP eCLIP7.36□□□□□ -1.23
SCN3A-210ENST00000640652 KDM2AQ9Y2K7 1162 aa7.35□□□□□ -1.23
SCN3A-210ENST00000640652 ARHGAP5Q13017 1502 aa7.35□□□□□ -1.23
SCN3A-210ENST00000640652 TEX14Q8IWB6 1497 aa7.35□□□□□ -1.23
SCN3A-210ENST00000640652 NUDCQ9Y266 331 aa7.35□□□□□ -1.23
SCN3A-210ENST00000640652 MAGI3Q5TCQ9 1506 aa7.35□□□□□ -1.23
SCN3A-210ENST00000640652 PLEKHH2Q8IVE3 1493 aa7.35□□□□□ -1.23
SCN3A-210ENST00000640652 ANKRD30BQ9BXX2 1392 aa7.35□□□□□ -1.23
SCN3A-210ENST00000640652 KDM6BO15054 1643 aa7.34□□□□□ -1.23
SCN3A-210ENST00000640652 KNSTRNQ9Y448 316 aa7.34□□□□□ -1.23
SCN3A-210ENST00000640652 KIF7Q2M1P5 1343 aa7.34□□□□□ -1.23
SCN3A-210ENST00000640652 MYBBP1AQ9BQG0 1328 aaKnown RBP7.34□□□□□ -1.23
SCN3A-210ENST00000640652 ARHGEF5Q12774 1597 aa7.34□□□□□ -1.23
SCN3A-210ENST00000640652 CCDC141Q6ZP82 1450 aa7.34□□□□□ -1.23
SCN3A-210ENST00000640652 RALGAPBQ86X10 1494 aa7.34□□□□□ -1.23
SCN3A-210ENST00000640652 SPHKAPQ2M3C7 1700 aa7.34□□□□□ -1.24
SCN3A-210ENST00000640652 B4GALNT3Q6L9W6 998 aa7.33□□□□□ -1.24
SCN3A-210ENST00000640652 KANK1Q14678 1352 aa7.33□□□□□ -1.24
SCN3A-210ENST00000640652 NUP153P49790 1475 aaKnown RBP7.33□□□□□ -1.24
SCN3A-210ENST00000640652 DCAF11Q8TEB1 546 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms