RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 ARHGEF12Q9NZN5 1544 aa24■■□□□ 1.43
SNX1-214ENST00000625244 PLEKHD1A6NEE1 506 aa23.99■■□□□ 1.43
SNX1-214ENST00000625244 CFAP74Q9C0B2 1584 aa23.99■■□□□ 1.43
SNX1-214ENST00000625244 HECW1Q76N89 1606 aa23.99■■□□□ 1.43
SNX1-214ENST00000625244 SAMD9Q5K651 1589 aa23.98■■□□□ 1.43
SNX1-214ENST00000625244 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.97■■□□□ 1.43
SNX1-214ENST00000625244 PTPRTO14522 1441 aa23.93■■□□□ 1.42
SNX1-214ENST00000625244 UHRF1BP1Q6BDS2 1440 aa23.93■■□□□ 1.42
SNX1-214ENST00000625244 ATP10AO60312 1499 aa23.92■■□□□ 1.42
SNX1-214ENST00000625244 SCAPERQ9BY12 1400 aa23.92■■□□□ 1.42
SNX1-214ENST00000625244 LTBP4Q8N2S1 1624 aa23.91■■□□□ 1.42
SNX1-214ENST00000625244 C9orf84Q5VXU9 1444 aa23.9■■□□□ 1.42
SNX1-214ENST00000625244 IQSEC2Q5JU85 1478 aa23.85■■□□□ 1.41
SNX1-214ENST00000625244 SETD1BQ9UPS6 1966 aaKnown RBP23.85■■□□□ 1.41
SNX1-214ENST00000625244 RANGAP1P46060 587 aaPredicted RBP23.83■■□□□ 1.41
SNX1-214ENST00000625244 PLCH2O75038 1416 aa23.82■■□□□ 1.4
SNX1-214ENST00000625244 NCOA1Q15788 1441 aa23.76■■□□□ 1.39
SNX1-214ENST00000625244 UBAP1LF5GYI3 381 aa23.74■■□□□ 1.39
SNX1-214ENST00000625244 EFCAB2Q5VUJ9 269 aa23.73■■□□□ 1.39
SNX1-214ENST00000625244 AFAP1Q8N556 730 aa23.72■■□□□ 1.39
SNX1-214ENST00000625244 C3P01024 1663 aa23.71■■□□□ 1.39
SNX1-214ENST00000625244 CDK13Q14004 1512 aaKnown RBP23.71■■□□□ 1.39
SNX1-214ENST00000625244 TRAPPC8Q9Y2L5 1435 aa23.71■■□□□ 1.39
SNX1-214ENST00000625244 CSRNP3Q8WYN3 585 aa23.69■■□□□ 1.38
SNX1-214ENST00000625244 ZNF518AQ6AHZ1 1483 aa23.68■■□□□ 1.38
SNX1-214ENST00000625244 ZNF335Q9H4Z2 1342 aaPredicted RBP23.68■■□□□ 1.38
SNX1-214ENST00000625244 MYT1LQ9UL68 1186 aa23.67■■□□□ 1.38
SNX1-214ENST00000625244 DIP2CQ9Y2E4 1556 aa23.65■■□□□ 1.38
SNX1-214ENST00000625244 ESF1Q9H501 851 aaKnown RBP23.65■■□□□ 1.38
SNX1-214ENST00000625244 KDM5CP41229 1560 aa23.65■■□□□ 1.38
SNX1-214ENST00000625244 NCKAP5LQ9HCH0 1330 aa23.63■■□□□ 1.37
SNX1-214ENST00000625244 REREQ9P2R6 1566 aa23.62■■□□□ 1.37
SNX1-214ENST00000625244 CAMSAP1Q5T5Y3 1602 aa23.62■■□□□ 1.37
SNX1-214ENST00000625244 MYO5CQ9NQX4 1742 aa23.6■■□□□ 1.37
SNX1-214ENST00000625244 ABCA6Q8N139 1617 aa23.58■■□□□ 1.36
SNX1-214ENST00000625244 HSPA1LP34931 641 aa23.57■■□□□ 1.36
SNX1-214ENST00000625244 AGLP35573 1532 aa23.57■■□□□ 1.36
SNX1-214ENST00000625244 MED1Q15648 1581 aaPredicted RBP23.57■■□□□ 1.36
SNX1-214ENST00000625244 MLH3Q9UHC1 1453 aa23.56■■□□□ 1.36
SNX1-214ENST00000625244 ARHGAP5Q13017 1502 aa23.55■■□□□ 1.36
SNX1-214ENST00000625244 CNTLNQ9NXG0 1405 aa23.54■■□□□ 1.36
SNX1-214ENST00000625244 KIF14Q15058 1648 aa23.54■■□□□ 1.36
SNX1-214ENST00000625244 ATP1B4Q9UN42 357 aaPredicted RBP23.53■■□□□ 1.36
SNX1-214ENST00000625244 NPATQ14207 1427 aa23.51■■□□□ 1.35
SNX1-214ENST00000625244 PKD2Q13563 968 aa23.49■■□□□ 1.35
SNX1-214ENST00000625244 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
SNX1-214ENST00000625244 PIP4K2BP78356 416 aa23.48■■□□□ 1.35
SNX1-214ENST00000625244 CDK11AQ9UQ88 783 aaPredicted RBP23.48■■□□□ 1.35
SNX1-214ENST00000625244 ZMYM3Q14202 1370 aa23.48■■□□□ 1.35
SNX1-214ENST00000625244 PLA2R1Q13018 1463 aa23.45■■□□□ 1.34
SNX1-214ENST00000625244 TCOF1Q13428 1488 aaKnown RBP23.45■■□□□ 1.34
SNX1-214ENST00000625244 TROQ12816 1431 aaPredicted RBP23.45■■□□□ 1.34
SNX1-214ENST00000625244 PPP6R1Q9UPN7 881 aa23.42■■□□□ 1.34
SNX1-214ENST00000625244 PHF23Q9BUL5 403 aaPredicted RBP23.41■■□□□ 1.34
SNX1-214ENST00000625244 MROH2AA6NES4 1674 aa23.41■■□□□ 1.34
SNX1-214ENST00000625244 KIDINS220Q9ULH0 1771 aa23.4■■□□□ 1.34
SNX1-214ENST00000625244 TOM1O60784 492 aa23.4■■□□□ 1.34
SNX1-214ENST00000625244 CDC42BPBQ9Y5S2 1711 aa23.39■■□□□ 1.34
SNX1-214ENST00000625244 ABCC1P33527 1531 aa23.39■■□□□ 1.34
SNX1-214ENST00000625244 MYO3AQ8NEV4 1616 aa23.37■■□□□ 1.33
SNX1-214ENST00000625244 CLIP1P30622 1438 aa23.37■■□□□ 1.33
SNX1-214ENST00000625244 ZNF142P52746 1687 aaPredicted RBP23.37■■□□□ 1.33
SNX1-214ENST00000625244 CEP170BQ9Y4F5 1589 aaPredicted RBP23.36■■□□□ 1.33
SNX1-214ENST00000625244 FMN1Q68DA7 1419 aa23.36■■□□□ 1.33
SNX1-214ENST00000625244 PTPRKQ15262 1439 aa23.35■■□□□ 1.33
SNX1-214ENST00000625244 ITSN2Q9NZM3 1697 aa23.35■■□□□ 1.33
SNX1-214ENST00000625244 EEA1Q15075 1411 aa23.33■■□□□ 1.33
SNX1-214ENST00000625244 SUPT6HQ7KZ85 1726 aaKnown RBP23.3■■□□□ 1.32
SNX1-214ENST00000625244 PREX2Q70Z35 1606 aa23.3■■□□□ 1.32
SNX1-214ENST00000625244 CLTCQ00610 1675 aaKnown RBP23.3■■□□□ 1.32
SNX1-214ENST00000625244 CPS1P31327 1500 aa23.28■■□□□ 1.32
SNX1-214ENST00000625244 SAMD9LQ8IVG5 1584 aa23.28■■□□□ 1.32
SNX1-214ENST00000625244 SHANK2Q9UPX8 1470 aa23.27■■□□□ 1.32
SNX1-214ENST00000625244 ARHGAP35Q9NRY4 1499 aa23.26■■□□□ 1.31
SNX1-214ENST00000625244 SPAG9O60271 1321 aaKnown RBP23.25■■□□□ 1.31
SNX1-214ENST00000625244 ALKQ9UM73 1620 aa23.25■■□□□ 1.31
SNX1-214ENST00000625244 GGT6Q6P531 493 aa23.24■■□□□ 1.31
SNX1-214ENST00000625244 LRRIQ1Q96JM4 1722 aa23.24■■□□□ 1.31
SNX1-214ENST00000625244 A2ML1A8K2U0 1454 aa23.24■■□□□ 1.31
SNX1-214ENST00000625244 SENP3Q9H4L4 574 aaPredicted RBP23.23■■□□□ 1.31
SNX1-214ENST00000625244 EHMT2Q96KQ7 1210 aa23.22■■□□□ 1.31
SNX1-214ENST00000625244 ZNF777Q9ULD5 760 aaPredicted RBP23.22■■□□□ 1.31
SNX1-214ENST00000625244 DNMT1P26358 1616 aaKnown RBP23.22■■□□□ 1.31
SNX1-214ENST00000625244 RGS17Q9UGC6 210 aaPredicted RBP23.21■■□□□ 1.31
SNX1-214ENST00000625244 NEURL4Q96JN8 1562 aa23.21■■□□□ 1.31
SNX1-214ENST00000625244 HNRNPMP52272 730 aaKnown RBP eCLIP23.2■■□□□ 1.3
SNX1-214ENST00000625244 PLXNC1O60486 1568 aa23.19■■□□□ 1.3
SNX1-214ENST00000625244 A2MP01023 1474 aa23.18■■□□□ 1.3
SNX1-214ENST00000625244 SYCP2Q9BX26 1530 aa23.18■■□□□ 1.3
SNX1-214ENST00000625244 UBTFP17480 764 aaKnown RBP23.17■■□□□ 1.3
SNX1-214ENST00000625244 CDC42BPAQ5VT25 1732 aa23.16■■□□□ 1.3
SNX1-214ENST00000625244 VWDEQ8N2E2 1590 aa23.16■■□□□ 1.3
SNX1-214ENST00000625244 ATP7AQ04656 1500 aa23.16■■□□□ 1.3
SNX1-214ENST00000625244 POLR1AO95602 1720 aaPredicted RBP23.13■■□□□ 1.29
SNX1-214ENST00000625244 FBXO31Q5XUX0 539 aaPredicted RBP23.12■■□□□ 1.29
SNX1-214ENST00000625244 ANKLE2Q86XL3 938 aa23.11■■□□□ 1.29
SNX1-214ENST00000625244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.1■■□□□ 1.29
SNX1-214ENST00000625244 INO80Q9ULG1 1556 aaPredicted RBP23.1■■□□□ 1.29
SNX1-214ENST00000625244 TNRQ92752 1358 aa23.09■■□□□ 1.29
SNX1-214ENST00000625244 GPATCH8Q9UKJ3 1502 aaKnown RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms