RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 ZNF644Q9H582 1327 aaPredicted RBP28.46■■■□□ 2.15
PCDHB11-202ENST00000624887 MIER1Q8N108 512 aa28.46■■■□□ 2.15
PCDHB11-202ENST00000624887 KDM6BO15054 1643 aa28.46■■■□□ 2.15
PCDHB11-202ENST00000624887 CAMSAP2Q08AD1 1489 aa28.44■■■□□ 2.14
PCDHB11-202ENST00000624887 PLEKHD1A6NEE1 506 aa28.43■■■□□ 2.14
PCDHB11-202ENST00000624887 CFDP1Q9UEE9 299 aaPredicted RBP28.43■■■□□ 2.14
PCDHB11-202ENST00000624887 OSCARQ8IYS5 282 aa28.42■■■□□ 2.14
PCDHB11-202ENST00000624887 PELP1Q8IZL8 1130 aaKnown RBP28.41■■■□□ 2.14
PCDHB11-202ENST00000624887 ACIN1Q9UKV3 1341 aaKnown RBP28.4■■■□□ 2.14
PCDHB11-202ENST00000624887 PPP1R15AO75807 674 aaPredicted RBP28.4■■■□□ 2.14
PCDHB11-202ENST00000624887 ABCC10Q5T3U5 1492 aa28.38■■■□□ 2.13
PCDHB11-202ENST00000624887 DENND4BO75064 1496 aaPredicted RBP28.36■■■□□ 2.13
PCDHB11-202ENST00000624887 TONSLQ96HA7 1378 aa28.36■■■□□ 2.13
PCDHB11-202ENST00000624887 CDC42BPAQ5VT25 1732 aa28.36■■■□□ 2.13
PCDHB11-202ENST00000624887 TRIM52Q96A61 297 aa28.34■■■□□ 2.13
PCDHB11-202ENST00000624887 CROCC2H7BZ55 1655 aa28.31■■■□□ 2.12
PCDHB11-202ENST00000624887 ADGBQ8N7X0 1667 aa28.31■■■□□ 2.12
PCDHB11-202ENST00000624887 ABCC2Q92887 1545 aa28.31■■■□□ 2.12
PCDHB11-202ENST00000624887 CENPBP07199 599 aaPredicted RBP28.31■■■□□ 2.12
PCDHB11-202ENST00000624887 MPHOSPH9Q99550 1183 aa28.28■■■□□ 2.12
PCDHB11-202ENST00000624887 ADGRL2O95490 1459 aa28.28■■■□□ 2.12
PCDHB11-202ENST00000624887 ZNF777Q9ULD5 760 aaPredicted RBP28.27■■■□□ 2.12
PCDHB11-202ENST00000624887 NCOA1Q15788 1441 aa28.26■■■□□ 2.11
PCDHB11-202ENST00000624887 UHRF1BP1LA0JNW5 1464 aa28.25■■■□□ 2.11
PCDHB11-202ENST00000624887 KDM5BQ9UGL1 1544 aa28.22■■■□□ 2.11
PCDHB11-202ENST00000624887 SHANK2Q9UPX8 1470 aa28.19■■■□□ 2.1
PCDHB11-202ENST00000624887 ANKRD30AQ9BXX3 1397 aa28.18■■■□□ 2.1
PCDHB11-202ENST00000624887 SCAF1Q9H7N4 1312 aaKnown RBP28.17■■■□□ 2.1
PCDHB11-202ENST00000624887 PREX2Q70Z35 1606 aa28.15■■■□□ 2.1
PCDHB11-202ENST00000624887 ANKRD30BQ9BXX2 1392 aa28.13■■■□□ 2.09
PCDHB11-202ENST00000624887 CDC42BPBQ9Y5S2 1711 aa28.13■■■□□ 2.09
PCDHB11-202ENST00000624887 ARHGEF5Q12774 1597 aa28.13■■■□□ 2.09
PCDHB11-202ENST00000624887 C9orf84Q5VXU9 1444 aa28.11■■■□□ 2.09
PCDHB11-202ENST00000624887 PZPP20742 1482 aa28.1■■■□□ 2.09
PCDHB11-202ENST00000624887 ZCCHC11Q5TAX3 1644 aaKnown RBP28.1■■■□□ 2.09
PCDHB11-202ENST00000624887 YTHDC1Q96MU7 727 aaKnown RBP28.1■■■□□ 2.09
PCDHB11-202ENST00000624887 SLC4A1APQ9BWU0 796 aaKnown RBP28.09■■■□□ 2.09
PCDHB11-202ENST00000624887 FOXD1Q16676 465 aa28.08■■■□□ 2.09
PCDHB11-202ENST00000624887 MBD5Q9P267 1494 aa28.08■■■□□ 2.09
PCDHB11-202ENST00000624887 SAMD9LQ8IVG5 1584 aa28.07■■■□□ 2.08
PCDHB11-202ENST00000624887 ANKRD50Q9ULJ7 1429 aa28.07■■■□□ 2.08
PCDHB11-202ENST00000624887 RPRD2Q5VT52 1461 aaKnown RBP28.06■■■□□ 2.08
PCDHB11-202ENST00000624887 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.06■■■□□ 2.08
PCDHB11-202ENST00000624887 TTC37Q6PGP7 1564 aa28.05■■■□□ 2.08
PCDHB11-202ENST00000624887 TSPY4P0CV99 314 aa28.05■■■□□ 2.08
PCDHB11-202ENST00000624887 TSPY10P0CW01 314 aa28.05■■■□□ 2.08
PCDHB11-202ENST00000624887 HNRNPMP52272 730 aaKnown RBP eCLIP28.02■■■□□ 2.08
PCDHB11-202ENST00000624887 CCDC141Q6ZP82 1450 aa28.01■■■□□ 2.08
PCDHB11-202ENST00000624887 RSPH4AQ5TD94 716 aa28■■■□□ 2.07
PCDHB11-202ENST00000624887 HIRIP3Q9BW71 556 aaPredicted RBP27.99■■■□□ 2.07
PCDHB11-202ENST00000624887 L3MBTL2Q969R5 705 aa27.99■■■□□ 2.07
PCDHB11-202ENST00000624887 MYO5CQ9NQX4 1742 aa27.98■■■□□ 2.07
PCDHB11-202ENST00000624887 DDX10Q13206 875 aaKnown RBP27.98■■■□□ 2.07
PCDHB11-202ENST00000624887 ARHGAP5Q13017 1502 aa27.97■■■□□ 2.07
PCDHB11-202ENST00000624887 KIAA1107Q9UPP5 1409 aa27.96■■■□□ 2.07
PCDHB11-202ENST00000624887 TEX14Q8IWB6 1497 aa27.96■■■□□ 2.07
PCDHB11-202ENST00000624887 KIF15Q9NS87 1388 aa27.95■■■□□ 2.06
PCDHB11-202ENST00000624887 KDM5DQ9BY66 1539 aa27.94■■■□□ 2.06
PCDHB11-202ENST00000624887 KCNH8Q96L42 1107 aa27.93■■■□□ 2.06
PCDHB11-202ENST00000624887 SYCP2Q9BX26 1530 aa27.93■■■□□ 2.06
PCDHB11-202ENST00000624887 MAST1Q9Y2H9 1570 aa27.91■■■□□ 2.06
PCDHB11-202ENST00000624887 PLEKHH2Q8IVE3 1493 aa27.91■■■□□ 2.06
PCDHB11-202ENST00000624887 PKD2Q13563 968 aa27.88■■■□□ 2.05
PCDHB11-202ENST00000624887 WDR7Q9Y4E6 1490 aa27.88■■■□□ 2.05
PCDHB11-202ENST00000624887 NUP155O75694 1391 aa27.88■■■□□ 2.05
PCDHB11-202ENST00000624887 PLCH2O75038 1416 aa27.86■■■□□ 2.05
PCDHB11-202ENST00000624887 GTF3C3Q9Y5Q9 886 aa27.85■■■□□ 2.05
PCDHB11-202ENST00000624887 NPM1P06748 294 aaKnown RBP eCLIP27.84■■■□□ 2.05
PCDHB11-202ENST00000624887 ASXL2Q76L83 1435 aa27.81■■■□□ 2.04
PCDHB11-202ENST00000624887 HSPA5P11021 654 aaKnown RBP27.81■■■□□ 2.04
PCDHB11-202ENST00000624887 EIF4G2P78344 907 aaKnown RBP eCLIP27.81■■■□□ 2.04
PCDHB11-202ENST00000624887 PLXNC1O60486 1568 aa27.8■■■□□ 2.04
PCDHB11-202ENST00000624887 NBPF8Q3BBV2 869 aa27.79■■■□□ 2.04
PCDHB11-202ENST00000624887 ARHGEF12Q9NZN5 1544 aa27.77■■■□□ 2.04
PCDHB11-202ENST00000624887 EFCAB2Q5VUJ9 269 aa27.77■■■□□ 2.04
PCDHB11-202ENST00000624887 ARAP3Q8WWN8 1544 aa27.75■■■□□ 2.03
PCDHB11-202ENST00000624887 ABCC1P33527 1531 aa27.74■■■□□ 2.03
PCDHB11-202ENST00000624887 RIMBP3CA6NJZ7 1639 aa27.74■■■□□ 2.03
PCDHB11-202ENST00000624887 RIMBP3BA6NNM3 1639 aa27.74■■■□□ 2.03
PCDHB11-202ENST00000624887 RIMBP3Q9UFD9 1639 aa27.74■■■□□ 2.03
PCDHB11-202ENST00000624887 FAM135AQ9P2D6 1515 aa27.73■■■□□ 2.03
PCDHB11-202ENST00000624887 UNC13BO14795 1591 aa27.72■■■□□ 2.03
PCDHB11-202ENST00000624887 ANP32CO43423 234 aa27.71■■■□□ 2.03
PCDHB11-202ENST00000624887 ABCA9Q8IUA7 1624 aa27.7■■■□□ 2.03
PCDHB11-202ENST00000624887 WASHC2AQ641Q2 1341 aa27.69■■■□□ 2.02
PCDHB11-202ENST00000624887 DUOX2Q9NRD8 1548 aa27.69■■■□□ 2.02
PCDHB11-202ENST00000624887 CYB5RLQ6IPT4 315 aa27.69■■■□□ 2.02
PCDHB11-202ENST00000624887 CCER2I3L3R5 266 aa27.67■■■□□ 2.02
PCDHB11-202ENST00000624887 SPATA31E1Q6ZUB1 1445 aa27.67■■■□□ 2.02
PCDHB11-202ENST00000624887 ERBINQ96RT1 1412 aa27.64■■■□□ 2.02
PCDHB11-202ENST00000624887 TRAPPC8Q9Y2L5 1435 aa27.63■■■□□ 2.01
PCDHB11-202ENST00000624887 UHRF1BP1Q6BDS2 1440 aa27.62■■■□□ 2.01
PCDHB11-202ENST00000624887 IQGAP3Q86VI3 1631 aa27.62■■■□□ 2.01
PCDHB11-202ENST00000624887 MAGI2Q86UL8 1455 aa27.6■■■□□ 2.01
PCDHB11-202ENST00000624887 RTEL1-TNFRSF6BF6WH68 1400 aa27.58■■■□□ 2
PCDHB11-202ENST00000624887 POLR1AO95602 1720 aaPredicted RBP27.58■■■□□ 2
PCDHB11-202ENST00000624887 CCDC7Q96M83 1385 aa27.57■■■□□ 2
PCDHB11-202ENST00000624887 FANCAO15360 1455 aa27.57■■■□□ 2
PCDHB11-202ENST00000624887 C11orf95C9JLR9 678 aaPredicted RBP27.55■■■□□ 2
PCDHB11-202ENST00000624887 CNTLNQ9NXG0 1405 aa27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms