RNA–Protein interactions for RNA: ENST00000616247.4

LMO3-235, Transcript of LIM domain only 3, humanhuman

TSL 5 BASIC

Gene LMO3, Length 3,227 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-235ENST00000616247 GSE1Q14687 1217 aa8.86□□□□□ -0.99
LMO3-235ENST00000616247 TCERG1O14776 1098 aaKnown RBP8.85□□□□□ -0.99
LMO3-235ENST00000616247 MPHOSPH9Q99550 1183 aa8.85□□□□□ -0.99
LMO3-235ENST00000616247 CADPSQ9ULU8 1353 aa8.85□□□□□ -0.99
LMO3-235ENST00000616247 SLC4A1APQ9BWU0 796 aaKnown RBP8.85□□□□□ -0.99
LMO3-235ENST00000616247 NBPF8Q3BBV2 869 aa8.84□□□□□ -0.99
LMO3-235ENST00000616247 TIAM1Q13009 1591 aa8.84□□□□□ -0.99
LMO3-235ENST00000616247 RCAN3Q9UKA8 241 aa8.84□□□□□ -0.99
LMO3-235ENST00000616247 IGF1RP08069 1367 aa8.84□□□□□ -0.99
LMO3-235ENST00000616247 CFTRP13569 1480 aa8.84□□□□□ -0.99
LMO3-235ENST00000616247 FRAT1Q92837 279 aaPredicted RBP8.84□□□□□ -0.99
LMO3-235ENST00000616247 KDM2AQ9Y2K7 1162 aa8.84□□□□□ -0.99
LMO3-235ENST00000616247 UACAQ9BZF9 1416 aa8.83□□□□□ -1
LMO3-235ENST00000616247 USP35Q9P2H5 1018 aa8.83□□□□□ -1
LMO3-235ENST00000616247 NFKBIBQ15653 356 aa8.83□□□□□ -1
LMO3-235ENST00000616247 TOP2BQ02880 1626 aa8.83□□□□□ -1
LMO3-235ENST00000616247 RGS3P49796 1198 aa8.82□□□□□ -1
LMO3-235ENST00000616247 RRP1P56182 461 aaKnown RBP8.82□□□□□ -1
LMO3-235ENST00000616247 DDRGK1Q96HY6 314 aa8.82□□□□□ -1
LMO3-235ENST00000616247 RNF39Q9H2S5 420 aa8.82□□□□□ -1
LMO3-235ENST00000616247 BACH2Q9BYV9 841 aa8.81□□□□□ -1
LMO3-235ENST00000616247 FMN1Q68DA7 1419 aa8.81□□□□□ -1
LMO3-235ENST00000616247 AQRO60306 1485 aaKnown RBP eCLIP8.81□□□□□ -1
LMO3-235ENST00000616247 FGD6Q6ZV73 1430 aa8.8□□□□□ -1
LMO3-235ENST00000616247 SMG6Q86US8 1419 aaKnown RBP8.8□□□□□ -1
LMO3-235ENST00000616247 PTPRKQ15262 1439 aa8.8□□□□□ -1
LMO3-235ENST00000616247 CDCA7LQ96GN5 454 aa8.79□□□□□ -1
LMO3-235ENST00000616247 UBE2Q2Q8WVN8 375 aa8.78□□□□□ -1
LMO3-235ENST00000616247 FRAT2O75474 233 aaPredicted RBP8.78□□□□□ -1
LMO3-235ENST00000616247 CUX1P39880 1505 aa8.78□□□□□ -1
LMO3-235ENST00000616247 CRBNQ96SW2 442 aa8.78□□□□□ -1
LMO3-235ENST00000616247 PNISRQ8TF01 805 aaKnown RBP8.77□□□□□ -1.01
LMO3-235ENST00000616247 ZNF777Q9ULD5 760 aaPredicted RBP8.77□□□□□ -1.01
LMO3-235ENST00000616247 NAIPQ13075 1403 aa8.77□□□□□ -1.01
LMO3-235ENST00000616247 C1QBPQ07021 282 aaKnown RBP8.77□□□□□ -1.01
LMO3-235ENST00000616247 FANCD2Q9BXW9 1451 aa8.76□□□□□ -1.01
LMO3-235ENST00000616247 CARD11Q9BXL7 1154 aa8.76□□□□□ -1.01
LMO3-235ENST00000616247 HFM1A2PYH4 1435 aa8.76□□□□□ -1.01
LMO3-235ENST00000616247 CC2D1BQ5T0F9 858 aaKnown RBP8.75□□□□□ -1.01
LMO3-235ENST00000616247 SLKQ9H2G2 1235 aaPredicted RBP8.75□□□□□ -1.01
LMO3-235ENST00000616247 NAP1L5Q96NT1 182 aaPredicted RBP8.75□□□□□ -1.01
LMO3-235ENST00000616247 WASHC2CQ9Y4E1 1318 aa8.74□□□□□ -1.01
LMO3-235ENST00000616247 MS4A1P11836 297 aa8.74□□□□□ -1.01
LMO3-235ENST00000616247 NCOA1Q15788 1441 aa8.74□□□□□ -1.01
LMO3-235ENST00000616247 ARID4BQ4LE39 1312 aaPredicted RBP8.74□□□□□ -1.01
LMO3-235ENST00000616247 PCF11O94913 1555 aaKnown RBP8.73□□□□□ -1.01
LMO3-235ENST00000616247 SPRYD3Q8NCJ5 442 aa8.73□□□□□ -1.01
LMO3-235ENST00000616247 GZF1Q9H116 711 aaPredicted RBP8.72□□□□□ -1.01
LMO3-235ENST00000616247 USP47Q96K76 1375 aa8.71□□□□□ -1.01
LMO3-235ENST00000616247 ST20-MTHFSA0A0A6YYL1 179 aa8.71□□□□□ -1.01
LMO3-235ENST00000616247 RNF123Q5XPI4 1314 aa8.71□□□□□ -1.01
LMO3-235ENST00000616247 C20orf194Q5TEA3 1177 aa8.71□□□□□ -1.02
LMO3-235ENST00000616247 VSIG10Q8N0Z9 540 aa8.71□□□□□ -1.02
LMO3-235ENST00000616247 RSPH6AQ9H0K4 717 aa8.71□□□□□ -1.02
LMO3-235ENST00000616247 GLIPR1L2Q4G1C9 344 aa8.7□□□□□ -1.02
LMO3-235ENST00000616247 MAP3K1Q13233 1512 aa8.7□□□□□ -1.02
LMO3-235ENST00000616247 RGL3Q3MIN7 710 aa8.7□□□□□ -1.02
LMO3-235ENST00000616247 KIF21AQ7Z4S6 1674 aa8.7□□□□□ -1.02
LMO3-235ENST00000616247 LAMC3Q9Y6N6 1575 aa8.7□□□□□ -1.02
LMO3-235ENST00000616247 MYOM3Q5VTT5 1437 aa8.69□□□□□ -1.02
LMO3-235ENST00000616247 NCOA2Q15596 1464 aa8.69□□□□□ -1.02
LMO3-235ENST00000616247 PKD2Q13563 968 aa8.69□□□□□ -1.02
LMO3-235ENST00000616247 DCAF11Q8TEB1 546 aa8.69□□□□□ -1.02
LMO3-235ENST00000616247 POGKQ9P215 609 aa8.69□□□□□ -1.02
LMO3-235ENST00000616247 ZNF644Q9H582 1327 aaPredicted RBP8.69□□□□□ -1.02
LMO3-235ENST00000616247 CASKIN1Q8WXD9 1431 aa8.69□□□□□ -1.02
LMO3-235ENST00000616247 PTPN23Q9H3S7 1636 aa8.69□□□□□ -1.02
LMO3-235ENST00000616247 MYBBP1AQ9BQG0 1328 aaKnown RBP8.69□□□□□ -1.02
LMO3-235ENST00000616247 URB2Q14146 1524 aaKnown RBP8.68□□□□□ -1.02
LMO3-235ENST00000616247 FAM161AQ3B820 660 aa8.68□□□□□ -1.02
LMO3-235ENST00000616247 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.68□□□□□ -1.02
LMO3-235ENST00000616247 CANXP27824 592 aaKnown RBP8.68□□□□□ -1.02
LMO3-235ENST00000616247 PKNOX2Q96KN3 472 aa8.68□□□□□ -1.02
LMO3-235ENST00000616247 RAD54L2Q9Y4B4 1467 aa8.68□□□□□ -1.02
LMO3-235ENST00000616247 PDS5BQ9NTI5 1447 aa8.67□□□□□ -1.02
LMO3-235ENST00000616247 BIVM-ERCC5R4GMW8 1640 aa8.67□□□□□ -1.02
LMO3-235ENST00000616247 PRDM2Q13029 1718 aa8.67□□□□□ -1.02
LMO3-235ENST00000616247 NLRP13Q86W25 1043 aa8.67□□□□□ -1.02
LMO3-235ENST00000616247 RALBP1Q15311 655 aa8.66□□□□□ -1.02
LMO3-235ENST00000616247 FGD5Q6ZNL6 1462 aa8.66□□□□□ -1.02
LMO3-235ENST00000616247 FAM43AQ8N2R8 423 aa8.66□□□□□ -1.02
LMO3-235ENST00000616247 FYCO1Q9BQS8 1478 aa8.66□□□□□ -1.02
LMO3-235ENST00000616247 DHX29Q7Z478 1369 aaKnown RBP8.66□□□□□ -1.02
LMO3-235ENST00000616247 KIF15Q9NS87 1388 aa8.66□□□□□ -1.02
LMO3-235ENST00000616247 WDR43Q15061 677 aaKnown RBP eCLIP8.65□□□□□ -1.02
LMO3-235ENST00000616247 TOPBP1Q92547 1522 aa8.65□□□□□ -1.02
LMO3-235ENST00000616247 PDE3BQ13370 1112 aa8.65□□□□□ -1.02
LMO3-235ENST00000616247 PNNQ9H307 717 aaKnown RBP8.65□□□□□ -1.02
LMO3-235ENST00000616247 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.64□□□□□ -1.03
LMO3-235ENST00000616247 BECN1Q14457 450 aa8.64□□□□□ -1.03
LMO3-235ENST00000616247 CENPQQ7L2Z9 268 aaPredicted RBP8.64□□□□□ -1.03
LMO3-235ENST00000616247 ERCC6Q03468 1493 aa8.64□□□□□ -1.03
LMO3-235ENST00000616247 KTN1Q86UP2 1357 aaKnown RBP8.63□□□□□ -1.03
LMO3-235ENST00000616247 TDRD9Q8NDG6 1382 aaKnown RBP8.63□□□□□ -1.03
LMO3-235ENST00000616247 ANKRD30BQ9BXX2 1392 aa8.63□□□□□ -1.03
LMO3-235ENST00000616247 KDM5BQ9UGL1 1544 aa8.63□□□□□ -1.03
LMO3-235ENST00000616247 HSP90AA2PQ14568 343 aaPredicted RBP8.62□□□□□ -1.03
LMO3-235ENST00000616247 RRAGDQ9NQL2 400 aaPredicted RBP8.62□□□□□ -1.03
LMO3-235ENST00000616247 POLA1P09884 1462 aaPredicted RBP8.62□□□□□ -1.03
LMO3-235ENST00000616247 HSP90AA1P07900 732 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms