RNA–Protein interactions for RNA: ENST00000605424.5

MMP28-201, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MMP28, Length 1,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-201ENST00000605424 PTPRGP23470 1445 aa28.59■■■□□ 2.17
MMP28-201ENST00000605424 PLEKHD1A6NEE1 506 aa28.59■■■□□ 2.17
MMP28-201ENST00000605424 MIER1Q8N108 512 aa28.58■■■□□ 2.17
MMP28-201ENST00000605424 PPP1R15AO75807 674 aaPredicted RBP28.57■■■□□ 2.16
MMP28-201ENST00000605424 CENPBP07199 599 aaPredicted RBP28.57■■■□□ 2.16
MMP28-201ENST00000605424 KIF14Q15058 1648 aa28.57■■■□□ 2.16
MMP28-201ENST00000605424 CFDP1Q9UEE9 299 aaPredicted RBP28.57■■■□□ 2.16
MMP28-201ENST00000605424 CAMSAP2Q08AD1 1489 aa28.55■■■□□ 2.16
MMP28-201ENST00000605424 TONSLQ96HA7 1378 aa28.53■■■□□ 2.16
MMP28-201ENST00000605424 ZNF644Q9H582 1327 aaPredicted RBP28.51■■■□□ 2.16
MMP28-201ENST00000605424 KDM6BO15054 1643 aa28.5■■■□□ 2.15
MMP28-201ENST00000605424 ABCC10Q5T3U5 1492 aa28.5■■■□□ 2.15
MMP28-201ENST00000605424 RIMBP3CA6NJZ7 1639 aa28.48■■■□□ 2.15
MMP28-201ENST00000605424 RIMBP3BA6NNM3 1639 aa28.48■■■□□ 2.15
MMP28-201ENST00000605424 RIMBP3Q9UFD9 1639 aa28.48■■■□□ 2.15
MMP28-201ENST00000605424 TRIM52Q96A61 297 aa28.47■■■□□ 2.15
MMP28-201ENST00000605424 ADGBQ8N7X0 1667 aa28.46■■■□□ 2.15
MMP28-201ENST00000605424 ADGRL2O95490 1459 aa28.45■■■□□ 2.15
MMP28-201ENST00000605424 CDC42BPAQ5VT25 1732 aa28.45■■■□□ 2.14
MMP28-201ENST00000605424 DENND4BO75064 1496 aaPredicted RBP28.44■■■□□ 2.14
MMP28-201ENST00000605424 CROCC2H7BZ55 1655 aa28.44■■■□□ 2.14
MMP28-201ENST00000605424 MPHOSPH9Q99550 1183 aa28.43■■■□□ 2.14
MMP28-201ENST00000605424 DNAJC5Q9H3Z4 198 aa28.42■■■□□ 2.14
MMP28-201ENST00000605424 NCOA1Q15788 1441 aa28.4■■■□□ 2.14
MMP28-201ENST00000605424 SHANK2Q9UPX8 1470 aa28.37■■■□□ 2.13
MMP28-201ENST00000605424 ANKRD30AQ9BXX3 1397 aa28.35■■■□□ 2.13
MMP28-201ENST00000605424 ZNF777Q9ULD5 760 aaPredicted RBP28.35■■■□□ 2.13
MMP28-201ENST00000605424 ABCC2Q92887 1545 aa28.33■■■□□ 2.13
MMP28-201ENST00000605424 CYB5RLQ6IPT4 315 aa28.33■■■□□ 2.13
MMP28-201ENST00000605424 KDM5BQ9UGL1 1544 aa28.32■■■□□ 2.12
MMP28-201ENST00000605424 ARHGEF5Q12774 1597 aa28.3■■■□□ 2.12
MMP28-201ENST00000605424 SCAF1Q9H7N4 1312 aaKnown RBP28.3■■■□□ 2.12
MMP28-201ENST00000605424 PREX2Q70Z35 1606 aa28.27■■■□□ 2.12
MMP28-201ENST00000605424 ANKRD30BQ9BXX2 1392 aa28.27■■■□□ 2.12
MMP28-201ENST00000605424 RSPH4AQ5TD94 716 aa28.25■■■□□ 2.11
MMP28-201ENST00000605424 C9orf84Q5VXU9 1444 aa28.24■■■□□ 2.11
MMP28-201ENST00000605424 UHRF1BP1LA0JNW5 1464 aa28.24■■■□□ 2.11
MMP28-201ENST00000605424 SLC4A1APQ9BWU0 796 aaKnown RBP28.23■■■□□ 2.11
MMP28-201ENST00000605424 RPRD2Q5VT52 1461 aaKnown RBP28.22■■■□□ 2.11
MMP28-201ENST00000605424 TSPY4P0CV99 314 aa28.22■■■□□ 2.11
MMP28-201ENST00000605424 TSPY10P0CW01 314 aa28.22■■■□□ 2.11
MMP28-201ENST00000605424 PZPP20742 1482 aa28.21■■■□□ 2.11
MMP28-201ENST00000605424 CDC42BPBQ9Y5S2 1711 aa28.21■■■□□ 2.11
MMP28-201ENST00000605424 ANKRD50Q9ULJ7 1429 aa28.21■■■□□ 2.11
MMP28-201ENST00000605424 MBD5Q9P267 1494 aa28.2■■■□□ 2.1
MMP28-201ENST00000605424 YTHDC1Q96MU7 727 aaKnown RBP28.18■■■□□ 2.1
MMP28-201ENST00000605424 SAMD9LQ8IVG5 1584 aa28.17■■■□□ 2.1
MMP28-201ENST00000605424 CCDC141Q6ZP82 1450 aa28.16■■■□□ 2.1
MMP28-201ENST00000605424 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.15■■■□□ 2.1
MMP28-201ENST00000605424 KIAA1107Q9UPP5 1409 aa28.13■■■□□ 2.09
MMP28-201ENST00000605424 TTC37Q6PGP7 1564 aa28.12■■■□□ 2.09
MMP28-201ENST00000605424 PLEKHH2Q8IVE3 1493 aa28.12■■■□□ 2.09
MMP28-201ENST00000605424 FOXD1Q16676 465 aa28.12■■■□□ 2.09
MMP28-201ENST00000605424 L3MBTL2Q969R5 705 aa28.11■■■□□ 2.09
MMP28-201ENST00000605424 KDM5DQ9BY66 1539 aa28.11■■■□□ 2.09
MMP28-201ENST00000605424 HNRNPMP52272 730 aaKnown RBP eCLIP28.1■■■□□ 2.09
MMP28-201ENST00000605424 DDX10Q13206 875 aaKnown RBP28.1■■■□□ 2.09
MMP28-201ENST00000605424 MYO5CQ9NQX4 1742 aa28.1■■■□□ 2.09
MMP28-201ENST00000605424 ZCCHC11Q5TAX3 1644 aaKnown RBP28.09■■■□□ 2.09
MMP28-201ENST00000605424 MAST1Q9Y2H9 1570 aa28.09■■■□□ 2.09
MMP28-201ENST00000605424 ARHGAP5Q13017 1502 aa28.08■■■□□ 2.09
MMP28-201ENST00000605424 TEX14Q8IWB6 1497 aa28.08■■■□□ 2.09
MMP28-201ENST00000605424 KIF15Q9NS87 1388 aa28.07■■■□□ 2.08
MMP28-201ENST00000605424 HIRIP3Q9BW71 556 aaPredicted RBP28.02■■■□□ 2.08
MMP28-201ENST00000605424 SYCP2Q9BX26 1530 aa28.01■■■□□ 2.08
MMP28-201ENST00000605424 PLCH2O75038 1416 aa28.01■■■□□ 2.07
MMP28-201ENST00000605424 NUP155O75694 1391 aa28.01■■■□□ 2.07
MMP28-201ENST00000605424 PKD2Q13563 968 aa28■■■□□ 2.07
MMP28-201ENST00000605424 GTF3C3Q9Y5Q9 886 aa28■■■□□ 2.07
MMP28-201ENST00000605424 EIF4G2P78344 907 aaKnown RBP eCLIP27.99■■■□□ 2.07
MMP28-201ENST00000605424 PLXNC1O60486 1568 aa27.95■■■□□ 2.07
MMP28-201ENST00000605424 HSPA5P11021 654 aaKnown RBP27.94■■■□□ 2.06
MMP28-201ENST00000605424 KCNH8Q96L42 1107 aa27.94■■■□□ 2.06
MMP28-201ENST00000605424 ARAP3Q8WWN8 1544 aa27.94■■■□□ 2.06
MMP28-201ENST00000605424 EFCAB2Q5VUJ9 269 aa27.93■■■□□ 2.06
MMP28-201ENST00000605424 NPM1P06748 294 aaKnown RBP eCLIP27.92■■■□□ 2.06
MMP28-201ENST00000605424 CCER2I3L3R5 266 aa27.9■■■□□ 2.06
MMP28-201ENST00000605424 ANP32CO43423 234 aa27.9■■■□□ 2.06
MMP28-201ENST00000605424 ASXL2Q76L83 1435 aa27.89■■■□□ 2.06
MMP28-201ENST00000605424 NBPF8Q3BBV2 869 aa27.88■■■□□ 2.05
MMP28-201ENST00000605424 UNC13BO14795 1591 aa27.87■■■□□ 2.05
MMP28-201ENST00000605424 ABCC1P33527 1531 aa27.85■■■□□ 2.05
MMP28-201ENST00000605424 FAM135AQ9P2D6 1515 aa27.85■■■□□ 2.05
MMP28-201ENST00000605424 DUOX2Q9NRD8 1548 aa27.85■■■□□ 2.05
MMP28-201ENST00000605424 ARHGEF12Q9NZN5 1544 aa27.85■■■□□ 2.05
MMP28-201ENST00000605424 WDR7Q9Y4E6 1490 aa27.83■■■□□ 2.05
MMP28-201ENST00000605424 WASHC2AQ641Q2 1341 aa27.81■■■□□ 2.04
MMP28-201ENST00000605424 SPATA31E1Q6ZUB1 1445 aa27.81■■■□□ 2.04
MMP28-201ENST00000605424 ERBINQ96RT1 1412 aa27.81■■■□□ 2.04
MMP28-201ENST00000605424 UHRF1BP1Q6BDS2 1440 aa27.81■■■□□ 2.04
MMP28-201ENST00000605424 RTEL1-TNFRSF6BF6WH68 1400 aa27.76■■■□□ 2.04
MMP28-201ENST00000605424 IQGAP3Q86VI3 1631 aa27.76■■■□□ 2.03
MMP28-201ENST00000605424 ABCA9Q8IUA7 1624 aa27.75■■■□□ 2.03
MMP28-201ENST00000605424 MAGI2Q86UL8 1455 aa27.74■■■□□ 2.03
MMP28-201ENST00000605424 POLR1AO95602 1720 aaPredicted RBP27.74■■■□□ 2.03
MMP28-201ENST00000605424 CCDC7Q96M83 1385 aa27.72■■■□□ 2.03
MMP28-201ENST00000605424 TRAPPC8Q9Y2L5 1435 aa27.71■■■□□ 2.03
MMP28-201ENST00000605424 CNTLNQ9NXG0 1405 aa27.7■■■□□ 2.02
MMP28-201ENST00000605424 RALGAPBQ86X10 1494 aa27.69■■■□□ 2.02
MMP28-201ENST00000605424 CCDC144AA2RUR9 1427 aa27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms