RNA–Protein interactions for RNA: ENST00000602723.5

CSMD1-217, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-217ENST00000602723 KIF27Q86VH2 1401 aa12.14□□□□□ -0.47
CSMD1-217ENST00000602723 SIN3AQ96ST3 1273 aa12.13□□□□□ -0.47
CSMD1-217ENST00000602723 TMF1P82094 1093 aa12.12□□□□□ -0.47
CSMD1-217ENST00000602723 KTN1Q86UP2 1357 aaKnown RBP12.12□□□□□ -0.47
CSMD1-217ENST00000602723 CCER2I3L3R5 266 aa12.12□□□□□ -0.47
CSMD1-217ENST00000602723 GOLGA6L1Q8N7Z2 621 aa12.12□□□□□ -0.47
CSMD1-217ENST00000602723 CCNB3Q8WWL7 1395 aa12.11□□□□□ -0.47
CSMD1-217ENST00000602723 RB1CC1Q8TDY2 1594 aa12.11□□□□□ -0.47
CSMD1-217ENST00000602723 IPO8O15397 1037 aaKnown RBP12.1□□□□□ -0.47
CSMD1-217ENST00000602723 ISY1Q9ULR0 285 aaKnown RBP12.1□□□□□ -0.47
CSMD1-217ENST00000602723 TNIKQ9UKE5 1360 aa12.1□□□□□ -0.47
CSMD1-217ENST00000602723 GOLGA6L3A6NEY3 463 aa12.1□□□□□ -0.47
CSMD1-217ENST00000602723 WRNQ14191 1432 aaPredicted RBP eCLIP12.1□□□□□ -0.47
CSMD1-217ENST00000602723 APBB1O00213 710 aa12.1□□□□□ -0.47
CSMD1-217ENST00000602723 HTATSF1O43719 755 aaKnown RBP12.1□□□□□ -0.47
CSMD1-217ENST00000602723 KANK1Q14678 1352 aa12.09□□□□□ -0.47
CSMD1-217ENST00000602723 FHAD1B1AJZ9 1412 aa12.09□□□□□ -0.47
CSMD1-217ENST00000602723 MORC1Q86VD1 984 aa12.09□□□□□ -0.47
CSMD1-217ENST00000602723 TCERG1O14776 1098 aaKnown RBP12.08□□□□□ -0.48
CSMD1-217ENST00000602723 TPM4P67936 248 aa12.08□□□□□ -0.48
CSMD1-217ENST00000602723 RCAN3Q9UKA8 241 aa12.08□□□□□ -0.48
CSMD1-217ENST00000602723 EIF4G1Q04637 1599 aaKnown RBP12.07□□□□□ -0.48
CSMD1-217ENST00000602723 ITPRIPQ8IWB1 547 aa12.07□□□□□ -0.48
CSMD1-217ENST00000602723 PHF14O94880 888 aa12.07□□□□□ -0.48
CSMD1-217ENST00000602723 BAZ1BQ9UIG0 1483 aaKnown RBP12.07□□□□□ -0.48
CSMD1-217ENST00000602723 DCAF11Q8TEB1 546 aa12.06□□□□□ -0.48
CSMD1-217ENST00000602723 RWDD1Q9H446 243 aaPredicted RBP12.06□□□□□ -0.48
CSMD1-217ENST00000602723 ARHGAP35Q9NRY4 1499 aa12.06□□□□□ -0.48
CSMD1-217ENST00000602723 A0A0U1RQG5 324 aaPredicted RBP12.05□□□□□ -0.48
CSMD1-217ENST00000602723 RTF1Q92541 710 aaKnown RBP12.05□□□□□ -0.48
CSMD1-217ENST00000602723 GPATCH3Q96I76 525 aa12.05□□□□□ -0.48
CSMD1-217ENST00000602723 SRPK2P78362 688 aaKnown RBP12.04□□□□□ -0.48
CSMD1-217ENST00000602723 IPO9Q96P70 1041 aaKnown RBP12.04□□□□□ -0.48
CSMD1-217ENST00000602723 CALD1Q05682 793 aaKnown RBP12.04□□□□□ -0.48
CSMD1-217ENST00000602723 CCDC34Q96HJ3 373 aa12.04□□□□□ -0.48
CSMD1-217ENST00000602723 HSP90AA2PQ14568 343 aaPredicted RBP12.03□□□□□ -0.48
CSMD1-217ENST00000602723 CSPP1Q1MSJ5 1256 aa12.03□□□□□ -0.48
CSMD1-217ENST00000602723 USP35Q9P2H5 1018 aa12.03□□□□□ -0.48
CSMD1-217ENST00000602723 SETD5Q9C0A6 1442 aa12.03□□□□□ -0.48
CSMD1-217ENST00000602723 MFAP1P55081 439 aaKnown RBP12.02□□□□□ -0.48
CSMD1-217ENST00000602723 SOX12O15370 315 aa12.02□□□□□ -0.48
CSMD1-217ENST00000602723 ROCK2O75116 1388 aaKnown RBP12.01□□□□□ -0.49
CSMD1-217ENST00000602723 RSPH6AQ9H0K4 717 aa12.01□□□□□ -0.49
CSMD1-217ENST00000602723 HSP90B1P14625 803 aaKnown RBP12.01□□□□□ -0.49
CSMD1-217ENST00000602723 RALBP1Q15311 655 aa11.99□□□□□ -0.49
CSMD1-217ENST00000602723 PMFBP1Q8TBY8 1022 aa11.99□□□□□ -0.49
CSMD1-217ENST00000602723 DDX11L8A8MPP1 907 aa11.99□□□□□ -0.49
CSMD1-217ENST00000602723 TRIM6-TRIM34B2RNG4 842 aa11.99□□□□□ -0.49
CSMD1-217ENST00000602723 HSPA5P11021 654 aaKnown RBP11.99□□□□□ -0.49
CSMD1-217ENST00000602723 EIF3AQ14152 1382 aaKnown RBP11.98□□□□□ -0.49
CSMD1-217ENST00000602723 SETQ01105 290 aaPredicted RBP11.98□□□□□ -0.49
CSMD1-217ENST00000602723 SAFB2Q14151 953 aaKnown RBP eCLIP11.98□□□□□ -0.49
CSMD1-217ENST00000602723 TIMELESSQ9UNS1 1208 aa11.97□□□□□ -0.49
CSMD1-217ENST00000602723 PDE4CQ08493 712 aa11.97□□□□□ -0.49
CSMD1-217ENST00000602723 U2AF1L5P0DN76 240 aaPredicted RBP11.97□□□□□ -0.49
CSMD1-217ENST00000602723 U2AF1Q01081 240 aaKnown RBP eCLIP11.97□□□□□ -0.49
CSMD1-217ENST00000602723 TPM3P06753 285 aa11.97□□□□□ -0.49
CSMD1-217ENST00000602723 TSHZ2Q9NRE2 1034 aa11.96□□□□□ -0.5
CSMD1-217ENST00000602723 ST18O60284 1047 aa11.96□□□□□ -0.5
CSMD1-217ENST00000602723 HMMRO75330 724 aa11.96□□□□□ -0.5
CSMD1-217ENST00000602723 RASSF8Q8NHQ8 419 aa11.96□□□□□ -0.5
CSMD1-217ENST00000602723 PRM3Q9NNZ6 103 aa11.95□□□□□ -0.5
CSMD1-217ENST00000602723 FOXD4L1Q9NU39 408 aa11.95□□□□□ -0.5
CSMD1-217ENST00000602723 KIF16BQ96L93 1317 aa11.95□□□□□ -0.5
CSMD1-217ENST00000602723 HDGFL2Q7Z4V5 671 aaPredicted RBP11.95□□□□□ -0.5
CSMD1-217ENST00000602723 CREBRFQ8IUR6 639 aa11.95□□□□□ -0.5
CSMD1-217ENST00000602723 NOL8Q76FK4 1167 aaKnown RBP11.94□□□□□ -0.5
CSMD1-217ENST00000602723 SMC4Q9NTJ3 1288 aa11.94□□□□□ -0.5
CSMD1-217ENST00000602723 SPAG9O60271 1321 aaKnown RBP11.94□□□□□ -0.5
CSMD1-217ENST00000602723 GORABQ5T7V8 394 aa11.93□□□□□ -0.5
CSMD1-217ENST00000602723 STK31Q9BXU1 1019 aa11.93□□□□□ -0.5
CSMD1-217ENST00000602723 ERCC6Q03468 1493 aa11.93□□□□□ -0.5
CSMD1-217ENST00000602723 NACADO15069 1562 aa11.92□□□□□ -0.5
CSMD1-217ENST00000602723 CHMP3Q9Y3E7 222 aa11.92□□□□□ -0.5
CSMD1-217ENST00000602723 FOXD4L5Q5VV16 416 aaPredicted RBP11.91□□□□□ -0.5
CSMD1-217ENST00000602723 FOXD4L4Q8WXT5 416 aaPredicted RBP11.91□□□□□ -0.5
CSMD1-217ENST00000602723 HDGFP51858 240 aaKnown RBP11.91□□□□□ -0.5
CSMD1-217ENST00000602723 VPS8Q8N3P4 1428 aa11.91□□□□□ -0.5
CSMD1-217ENST00000602723 CENPJQ9HC77 1338 aaPredicted RBP11.91□□□□□ -0.5
CSMD1-217ENST00000602723 CHMP4AQ9BY43 222 aa11.91□□□□□ -0.5
CSMD1-217ENST00000602723 ZNF330Q9Y3S2 320 aaPredicted RBP11.9□□□□□ -0.5
CSMD1-217ENST00000602723 CCAR2Q8N163 923 aaKnown RBP11.9□□□□□ -0.5
CSMD1-217ENST00000602723 BAZ1AQ9NRL2 1556 aaPredicted RBP11.9□□□□□ -0.5
CSMD1-217ENST00000602723 PHLDB1Q86UU1 1377 aa11.9□□□□□ -0.5
CSMD1-217ENST00000602723 STK26Q9P289 416 aa11.9□□□□□ -0.5
CSMD1-217ENST00000602723 FOXD1Q16676 465 aa11.9□□□□□ -0.5
CSMD1-217ENST00000602723 KIF3AQ9Y496 699 aa11.9□□□□□ -0.5
CSMD1-217ENST00000602723 CEP89Q96ST8 783 aa11.89□□□□□ -0.51
CSMD1-217ENST00000602723 HDAC5Q9UQL6 1122 aa11.89□□□□□ -0.51
CSMD1-217ENST00000602723 PKD2Q13563 968 aa11.89□□□□□ -0.51
CSMD1-217ENST00000602723 TSR1Q2NL82 804 aaKnown RBP11.88□□□□□ -0.51
CSMD1-217ENST00000602723 RAB3GAP2Q9H2M9 1393 aa11.88□□□□□ -0.51
CSMD1-217ENST00000602723 SF3A1Q15459 793 aaKnown RBP11.88□□□□□ -0.51
CSMD1-217ENST00000602723 PES1O00541 588 aaKnown RBP11.87□□□□□ -0.51
CSMD1-217ENST00000602723 CCDC70Q6NSX1 233 aa11.87□□□□□ -0.51
CSMD1-217ENST00000602723 TAF7LQ5H9L4 462 aa11.87□□□□□ -0.51
CSMD1-217ENST00000602723 GOLGA6L19H0YKK7 550 aa11.87□□□□□ -0.51
CSMD1-217ENST00000602723 H3BQV1 296 aa11.87□□□□□ -0.51
CSMD1-217ENST00000602723 IFFO2Q5TF58 517 aa11.87□□□□□ -0.51
CSMD1-217ENST00000602723 ZNF771Q7L3S4 317 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 1619.8 ms