RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 MAGI2Q86UL8 1455 aa19.56■□□□□ 0.72
SHKBP1-213ENST00000597325 CEBPAP49715 358 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-213ENST00000597325 UHRF1BP1Q6BDS2 1440 aa19.55■□□□□ 0.72
SHKBP1-213ENST00000597325 SETD1BQ9UPS6 1966 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-213ENST00000597325 EHMT2Q96KQ7 1210 aa19.52■□□□□ 0.72
SHKBP1-213ENST00000597325 HECW1Q76N89 1606 aa19.51■□□□□ 0.71
SHKBP1-213ENST00000597325 CFAP74Q9C0B2 1584 aa19.5■□□□□ 0.71
SHKBP1-213ENST00000597325 MED1Q15648 1581 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-213ENST00000597325 RAPGEF6Q8TEU7 1601 aa19.45■□□□□ 0.7
SHKBP1-213ENST00000597325 UBTFP17480 764 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-213ENST00000597325 ATP10AO60312 1499 aa19.45■□□□□ 0.7
SHKBP1-213ENST00000597325 NCOA1Q15788 1441 aa19.43■□□□□ 0.7
SHKBP1-213ENST00000597325 C9orf84Q5VXU9 1444 aa19.43■□□□□ 0.7
SHKBP1-213ENST00000597325 LOC105371045A0A1W2PR82 267 aa19.43■□□□□ 0.7
SHKBP1-213ENST00000597325 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.42■□□□□ 0.7
SHKBP1-213ENST00000597325 UBAP1LF5GYI3 381 aa19.42■□□□□ 0.7
SHKBP1-213ENST00000597325 NUP153P49790 1475 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-213ENST00000597325 P3H3Q8IVL6 736 aa19.41■□□□□ 0.7
SHKBP1-213ENST00000597325 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-213ENST00000597325 HNRNPUL2Q1KMD3 747 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-213ENST00000597325 C3P01024 1663 aa19.38■□□□□ 0.69
SHKBP1-213ENST00000597325 SCAPERQ9BY12 1400 aa19.36■□□□□ 0.69
SHKBP1-213ENST00000597325 SAMD9Q5K651 1589 aa19.36■□□□□ 0.69
SHKBP1-213ENST00000597325 ZNF335Q9H4Z2 1342 aaPredicted RBP19.34■□□□□ 0.69
SHKBP1-213ENST00000597325 TRAPPC8Q9Y2L5 1435 aa19.33■□□□□ 0.68
SHKBP1-213ENST00000597325 PLEKHD1A6NEE1 506 aa19.32■□□□□ 0.68
SHKBP1-213ENST00000597325 HSPA1LP34931 641 aa19.32■□□□□ 0.68
SHKBP1-213ENST00000597325 CAMSAP1Q5T5Y3 1602 aa19.29■□□□□ 0.68
SHKBP1-213ENST00000597325 PLCH2O75038 1416 aa19.28■□□□□ 0.68
SHKBP1-213ENST00000597325 CEP162Q5TB80 1403 aa19.26■□□□□ 0.67
SHKBP1-213ENST00000597325 REREQ9P2R6 1566 aa19.26■□□□□ 0.67
SHKBP1-213ENST00000597325 KDM5CP41229 1560 aa19.23■□□□□ 0.67
SHKBP1-213ENST00000597325 RANGAP1P46060 587 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-213ENST00000597325 DIP2CQ9Y2E4 1556 aa19.23■□□□□ 0.67
SHKBP1-213ENST00000597325 NCKAP5LQ9HCH0 1330 aa19.23■□□□□ 0.67
SHKBP1-213ENST00000597325 CLIP1P30622 1438 aa19.22■□□□□ 0.67
SHKBP1-213ENST00000597325 AGLP35573 1532 aa19.21■□□□□ 0.67
SHKBP1-213ENST00000597325 ZNF518AQ6AHZ1 1483 aa19.21■□□□□ 0.67
SHKBP1-213ENST00000597325 PHF23Q9BUL5 403 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-213ENST00000597325 PLA2R1Q13018 1463 aa19.18■□□□□ 0.66
SHKBP1-213ENST00000597325 TCOF1Q13428 1488 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-213ENST00000597325 NPATQ14207 1427 aa19.17■□□□□ 0.66
SHKBP1-213ENST00000597325 PIP4K2BP78356 416 aa19.17■□□□□ 0.66
SHKBP1-213ENST00000597325 ABCA6Q8N139 1617 aa19.16■□□□□ 0.66
SHKBP1-213ENST00000597325 PKD2Q13563 968 aa19.16■□□□□ 0.66
SHKBP1-213ENST00000597325 AFAP1Q8N556 730 aa19.16■□□□□ 0.66
SHKBP1-213ENST00000597325 SCAF1Q9H7N4 1312 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-213ENST00000597325 CNTLNQ9NXG0 1405 aa19.15■□□□□ 0.66
SHKBP1-213ENST00000597325 EFCAB2Q5VUJ9 269 aa19.14■□□□□ 0.65
SHKBP1-213ENST00000597325 ARHGAP35Q9NRY4 1499 aa19.14■□□□□ 0.65
SHKBP1-213ENST00000597325 TOM1O60784 492 aa19.13■□□□□ 0.65
SHKBP1-213ENST00000597325 ESF1Q9H501 851 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-213ENST00000597325 ZNF142P52746 1687 aaPredicted RBP19.13■□□□□ 0.65
SHKBP1-213ENST00000597325 MYO5CQ9NQX4 1742 aa19.12■□□□□ 0.65
SHKBP1-213ENST00000597325 MLH3Q9UHC1 1453 aa19.11■□□□□ 0.65
SHKBP1-213ENST00000597325 RGS17Q9UGC6 210 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-213ENST00000597325 SRCAPQ6ZRS2 3230 aa19.11■□□□□ 0.65
SHKBP1-213ENST00000597325 MROH2AA6NES4 1674 aa19.11■□□□□ 0.65
SHKBP1-213ENST00000597325 ALKQ9UM73 1620 aa19.11■□□□□ 0.65
SHKBP1-213ENST00000597325 CDK13Q14004 1512 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-213ENST00000597325 PPP6R1Q9UPN7 881 aa19.08■□□□□ 0.64
SHKBP1-213ENST00000597325 MYO3AQ8NEV4 1616 aa19.07■□□□□ 0.64
SHKBP1-213ENST00000597325 CPS1P31327 1500 aa19.07■□□□□ 0.64
SHKBP1-213ENST00000597325 CEP170BQ9Y4F5 1589 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-213ENST00000597325 ZMYM3Q14202 1370 aa19.06■□□□□ 0.64
SHKBP1-213ENST00000597325 SUPT6HQ7KZ85 1726 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-213ENST00000597325 MYT1LQ9UL68 1186 aa19.02■□□□□ 0.64
SHKBP1-213ENST00000597325 FMN1Q68DA7 1419 aa19.01■□□□□ 0.63
SHKBP1-213ENST00000597325 SHANK2Q9UPX8 1470 aa19.01■□□□□ 0.63
SHKBP1-213ENST00000597325 PTPRKQ15262 1439 aa19■□□□□ 0.63
SHKBP1-213ENST00000597325 ARHGAP5Q13017 1502 aa19■□□□□ 0.63
SHKBP1-213ENST00000597325 KIF14Q15058 1648 aa19■□□□□ 0.63
SHKBP1-213ENST00000597325 KIDINS220Q9ULH0 1771 aa19■□□□□ 0.63
SHKBP1-213ENST00000597325 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
SHKBP1-213ENST00000597325 NEURL4Q96JN8 1562 aa18.97■□□□□ 0.63
SHKBP1-213ENST00000597325 CDC42BPBQ9Y5S2 1711 aa18.95■□□□□ 0.62
SHKBP1-213ENST00000597325 DNMT1P26358 1616 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-213ENST00000597325 CLTCQ00610 1675 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-213ENST00000597325 ABCC1P33527 1531 aa18.94■□□□□ 0.62
SHKBP1-213ENST00000597325 VWDEQ8N2E2 1590 aa18.93■□□□□ 0.62
SHKBP1-213ENST00000597325 POLR1AO95602 1720 aaPredicted RBP18.93■□□□□ 0.62
SHKBP1-213ENST00000597325 ITSN2Q9NZM3 1697 aa18.92■□□□□ 0.62
SHKBP1-213ENST00000597325 A2ML1A8K2U0 1454 aa18.91■□□□□ 0.62
SHKBP1-213ENST00000597325 FYCO1Q9BQS8 1478 aa18.91■□□□□ 0.62
SHKBP1-213ENST00000597325 POTEAQ6S8J7 498 aa18.91■□□□□ 0.62
SHKBP1-213ENST00000597325 CASKIN1Q8WXD9 1431 aa18.9■□□□□ 0.62
SHKBP1-213ENST00000597325 TROQ12816 1431 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-213ENST00000597325 SENP3Q9H4L4 574 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-213ENST00000597325 CDK11AQ9UQ88 783 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-213ENST00000597325 PREX2Q70Z35 1606 aa18.85■□□□□ 0.61
SHKBP1-213ENST00000597325 ATP1B4Q9UN42 357 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-213ENST00000597325 PLXNC1O60486 1568 aa18.84■□□□□ 0.61
SHKBP1-213ENST00000597325 SAMD9LQ8IVG5 1584 aa18.84■□□□□ 0.61
SHKBP1-213ENST00000597325 SETD1AO15047 1707 aaKnown RBP18.83■□□□□ 0.61
SHKBP1-213ENST00000597325 RNF17Q9BXT8 1623 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-213ENST00000597325 APLP2Q06481 763 aa18.82■□□□□ 0.6
SHKBP1-213ENST00000597325 LRRC7Q96NW7 1537 aa18.82■□□□□ 0.6
SHKBP1-213ENST00000597325 STRCP1A6NGW2 1772 aa18.82■□□□□ 0.6
SHKBP1-213ENST00000597325 CCDC18Q5T9S5 1454 aa18.82■□□□□ 0.6
SHKBP1-213ENST00000597325 MED14O60244 1454 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms