RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 TTC37Q6PGP7 1564 aa23.38■■□□□ 1.33
SHKBP1-208ENST00000595726 MAGI2Q86UL8 1455 aa23.37■■□□□ 1.33
SHKBP1-208ENST00000595726 SCAPERQ9BY12 1400 aa23.37■■□□□ 1.33
SHKBP1-208ENST00000595726 CFAP74Q9C0B2 1584 aa23.36■■□□□ 1.33
SHKBP1-208ENST00000595726 DMRT2Q9Y5R5 561 aa23.36■■□□□ 1.33
SHKBP1-208ENST00000595726 ARHGEF12Q9NZN5 1544 aa23.33■■□□□ 1.33
SHKBP1-208ENST00000595726 STRCQ7RTU9 1775 aa23.33■■□□□ 1.33
SHKBP1-208ENST00000595726 ATP10AO60312 1499 aa23.32■■□□□ 1.32
SHKBP1-208ENST00000595726 PREX1Q8TCU6 1659 aa23.31■■□□□ 1.32
SHKBP1-208ENST00000595726 PLCH2O75038 1416 aa23.28■■□□□ 1.32
SHKBP1-208ENST00000595726 SPATA31D1Q6ZQQ2 1576 aa23.27■■□□□ 1.32
SHKBP1-208ENST00000595726 C9orf84Q5VXU9 1444 aa23.27■■□□□ 1.32
SHKBP1-208ENST00000595726 CDK13Q14004 1512 aaKnown RBP23.26■■□□□ 1.31
SHKBP1-208ENST00000595726 UHRF1BP1Q6BDS2 1440 aa23.25■■□□□ 1.31
SHKBP1-208ENST00000595726 EFCAB2Q5VUJ9 269 aa23.23■■□□□ 1.31
SHKBP1-208ENST00000595726 AFAP1Q8N556 730 aa23.23■■□□□ 1.31
SHKBP1-208ENST00000595726 ATP1B4Q9UN42 357 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-208ENST00000595726 MYT1LQ9UL68 1186 aa23.2■■□□□ 1.3
SHKBP1-208ENST00000595726 PTPRTO14522 1441 aa23.19■■□□□ 1.3
SHKBP1-208ENST00000595726 LTBP4Q8N2S1 1624 aa23.16■■□□□ 1.3
SHKBP1-208ENST00000595726 SETD1BQ9UPS6 1966 aaKnown RBP23.14■■□□□ 1.3
SHKBP1-208ENST00000595726 ZNF518AQ6AHZ1 1483 aa23.11■■□□□ 1.29
SHKBP1-208ENST00000595726 ESF1Q9H501 851 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-208ENST00000595726 C3P01024 1663 aa23.08■■□□□ 1.29
SHKBP1-208ENST00000595726 MYO5CQ9NQX4 1742 aa23.08■■□□□ 1.28
SHKBP1-208ENST00000595726 TRAPPC8Q9Y2L5 1435 aa23.08■■□□□ 1.28
SHKBP1-208ENST00000595726 DIP2CQ9Y2E4 1556 aa23.07■■□□□ 1.28
SHKBP1-208ENST00000595726 EHMT2Q96KQ7 1210 aa23.06■■□□□ 1.28
SHKBP1-208ENST00000595726 KIF14Q15058 1648 aa23.06■■□□□ 1.28
SHKBP1-208ENST00000595726 NCOA1Q15788 1441 aa23.06■■□□□ 1.28
SHKBP1-208ENST00000595726 KDM5CP41229 1560 aa23.06■■□□□ 1.28
SHKBP1-208ENST00000595726 ARHGAP5Q13017 1502 aa23.05■■□□□ 1.28
SHKBP1-208ENST00000595726 UBAP1LF5GYI3 381 aa23.04■■□□□ 1.28
SHKBP1-208ENST00000595726 CDK11AQ9UQ88 783 aaPredicted RBP23.04■■□□□ 1.28
SHKBP1-208ENST00000595726 NCKAP5LQ9HCH0 1330 aa23.04■■□□□ 1.28
SHKBP1-208ENST00000595726 IQSEC2Q5JU85 1478 aa23.03■■□□□ 1.28
SHKBP1-208ENST00000595726 ZNF335Q9H4Z2 1342 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-208ENST00000595726 ABCA6Q8N139 1617 aa23.01■■□□□ 1.27
SHKBP1-208ENST00000595726 EEA1Q15075 1411 aa22.99■■□□□ 1.27
SHKBP1-208ENST00000595726 MLH3Q9UHC1 1453 aa22.99■■□□□ 1.27
SHKBP1-208ENST00000595726 REREQ9P2R6 1566 aa22.98■■□□□ 1.27
SHKBP1-208ENST00000595726 TROQ12816 1431 aaPredicted RBP22.98■■□□□ 1.27
SHKBP1-208ENST00000595726 CAMSAP1Q5T5Y3 1602 aa22.97■■□□□ 1.27
SHKBP1-208ENST00000595726 AGLP35573 1532 aa22.96■■□□□ 1.27
SHKBP1-208ENST00000595726 FMN1Q68DA7 1419 aa22.93■■□□□ 1.26
SHKBP1-208ENST00000595726 UBTFP17480 764 aaKnown RBP22.92■■□□□ 1.26
SHKBP1-208ENST00000595726 CNTLNQ9NXG0 1405 aa22.91■■□□□ 1.26
SHKBP1-208ENST00000595726 ZMYM3Q14202 1370 aa22.91■■□□□ 1.26
SHKBP1-208ENST00000595726 CLIP1P30622 1438 aa22.91■■□□□ 1.26
SHKBP1-208ENST00000595726 CDC42BPBQ9Y5S2 1711 aa22.9■■□□□ 1.26
SHKBP1-208ENST00000595726 ARHGAP35Q9NRY4 1499 aa22.89■■□□□ 1.25
SHKBP1-208ENST00000595726 NPATQ14207 1427 aa22.88■■□□□ 1.25
SHKBP1-208ENST00000595726 KIDINS220Q9ULH0 1771 aa22.86■■□□□ 1.25
SHKBP1-208ENST00000595726 HSPA1LP34931 641 aa22.86■■□□□ 1.25
SHKBP1-208ENST00000595726 ABCC1P33527 1531 aa22.86■■□□□ 1.25
SHKBP1-208ENST00000595726 SCAF1Q9H7N4 1312 aaKnown RBP22.85■■□□□ 1.25
SHKBP1-208ENST00000595726 PIP4K2BP78356 416 aa22.84■■□□□ 1.25
SHKBP1-208ENST00000595726 PKD2Q13563 968 aa22.83■■□□□ 1.25
SHKBP1-208ENST00000595726 ZNF777Q9ULD5 760 aaPredicted RBP22.83■■□□□ 1.25
SHKBP1-208ENST00000595726 LRRIQ1Q96JM4 1722 aa22.82■■□□□ 1.24
SHKBP1-208ENST00000595726 ITSN2Q9NZM3 1697 aa22.81■■□□□ 1.24
SHKBP1-208ENST00000595726 PREX2Q70Z35 1606 aa22.8■■□□□ 1.24
SHKBP1-208ENST00000595726 PPP6R1Q9UPN7 881 aa22.8■■□□□ 1.24
SHKBP1-208ENST00000595726 HNRNPMP52272 730 aaKnown RBP eCLIP22.79■■□□□ 1.24
SHKBP1-208ENST00000595726 TCOF1Q13428 1488 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-208ENST00000595726 SPAG9O60271 1321 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-208ENST00000595726 MROH2AA6NES4 1674 aa22.77■■□□□ 1.24
SHKBP1-208ENST00000595726 GGT6Q6P531 493 aa22.77■■□□□ 1.24
SHKBP1-208ENST00000595726 SAMD9LQ8IVG5 1584 aa22.76■■□□□ 1.23
SHKBP1-208ENST00000595726 PTPRKQ15262 1439 aa22.76■■□□□ 1.23
SHKBP1-208ENST00000595726 PLA2R1Q13018 1463 aa22.76■■□□□ 1.23
SHKBP1-208ENST00000595726 MED1Q15648 1581 aaPredicted RBP22.76■■□□□ 1.23
SHKBP1-208ENST00000595726 SUPT6HQ7KZ85 1726 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-208ENST00000595726 CLTCQ00610 1675 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-208ENST00000595726 MYO3AQ8NEV4 1616 aa22.74■■□□□ 1.23
SHKBP1-208ENST00000595726 CEP170BQ9Y4F5 1589 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-208ENST00000595726 TOM1O60784 492 aa22.71■■□□□ 1.23
SHKBP1-208ENST00000595726 ZNF142P52746 1687 aaPredicted RBP22.7■■□□□ 1.22
SHKBP1-208ENST00000595726 CDC42BPAQ5VT25 1732 aa22.7■■□□□ 1.22
SHKBP1-208ENST00000595726 SYCP2Q9BX26 1530 aa22.69■■□□□ 1.22
SHKBP1-208ENST00000595726 PHF23Q9BUL5 403 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-208ENST00000595726 SENP3Q9H4L4 574 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-208ENST00000595726 A2MP01023 1474 aa22.66■■□□□ 1.22
SHKBP1-208ENST00000595726 CASKIN1Q8WXD9 1431 aa22.65■■□□□ 1.22
SHKBP1-208ENST00000595726 ATP7AQ04656 1500 aa22.64■■□□□ 1.21
SHKBP1-208ENST00000595726 GPATCH8Q9UKJ3 1502 aaKnown RBP22.64■■□□□ 1.21
SHKBP1-208ENST00000595726 CCDC18Q5T9S5 1454 aa22.63■■□□□ 1.21
SHKBP1-208ENST00000595726 FBXO31Q5XUX0 539 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-208ENST00000595726 PLXNC1O60486 1568 aa22.63■■□□□ 1.21
SHKBP1-208ENST00000595726 A2ML1A8K2U0 1454 aa22.62■■□□□ 1.21
SHKBP1-208ENST00000595726 SHANK2Q9UPX8 1470 aa22.62■■□□□ 1.21
SHKBP1-208ENST00000595726 DNMT1P26358 1616 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-208ENST00000595726 CFDP1Q9UEE9 299 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-208ENST00000595726 CPS1P31327 1500 aa22.58■■□□□ 1.21
SHKBP1-208ENST00000595726 INO80Q9ULG1 1556 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-208ENST00000595726 KIAA1107Q9UPP5 1409 aa22.57■■□□□ 1.2
SHKBP1-208ENST00000595726 NEURL4Q96JN8 1562 aa22.56■■□□□ 1.2
SHKBP1-208ENST00000595726 ZNF644Q9H582 1327 aaPredicted RBP22.56■■□□□ 1.2
SHKBP1-208ENST00000595726 TNRQ92752 1358 aa22.54■■□□□ 1.2
SHKBP1-208ENST00000595726 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms