RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 PPP1R15AO75807 674 aaPredicted RBP16.7■□□□□ 0.26
VRK3-208ENST00000594104 CDK11AQ9UQ88 783 aaPredicted RBP16.7■□□□□ 0.26
VRK3-208ENST00000594104 SYNJ2O15056 1496 aa16.69■□□□□ 0.26
VRK3-208ENST00000594104 SIN3AQ96ST3 1273 aa16.68■□□□□ 0.26
VRK3-208ENST00000594104 GTF3C3Q9Y5Q9 886 aa16.67■□□□□ 0.26
VRK3-208ENST00000594104 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
VRK3-208ENST00000594104 ROCK1Q13464 1354 aa16.64■□□□□ 0.26
VRK3-208ENST00000594104 CDK13Q14004 1512 aaKnown RBP16.64■□□□□ 0.25
VRK3-208ENST00000594104 CHMP7Q8WUX9 453 aaPredicted RBP16.64■□□□□ 0.25
VRK3-208ENST00000594104 RAPGEF6Q8TEU7 1601 aa16.64■□□□□ 0.25
VRK3-208ENST00000594104 NUP160Q12769 1436 aa16.63■□□□□ 0.25
VRK3-208ENST00000594104 CARMIL2Q6F5E8 1435 aa16.63■□□□□ 0.25
VRK3-208ENST00000594104 GCC2Q8IWJ2 1684 aa16.63■□□□□ 0.25
VRK3-208ENST00000594104 NUP153P49790 1475 aaKnown RBP16.63■□□□□ 0.25
VRK3-208ENST00000594104 KDM2AQ9Y2K7 1162 aa16.62■□□□□ 0.25
VRK3-208ENST00000594104 TONSLQ96HA7 1378 aa16.62■□□□□ 0.25
VRK3-208ENST00000594104 YTHDC1Q96MU7 727 aaKnown RBP16.6■□□□□ 0.25
VRK3-208ENST00000594104 TROQ12816 1431 aaPredicted RBP16.58■□□□□ 0.24
VRK3-208ENST00000594104 CEP170Q5SW79 1584 aa16.58■□□□□ 0.24
VRK3-208ENST00000594104 JPH4Q96JJ6 628 aa16.55■□□□□ 0.24
VRK3-208ENST00000594104 ATXN8OSP0DMR3 200 aa16.54■□□□□ 0.24
VRK3-208ENST00000594104 DAPK1P53355 1430 aa16.54■□□□□ 0.24
VRK3-208ENST00000594104 RRP7BPQ9NSQ0 103 aa16.54■□□□□ 0.24
VRK3-208ENST00000594104 DNMT1P26358 1616 aaKnown RBP16.53■□□□□ 0.24
VRK3-208ENST00000594104 ABCC5O15440 1437 aa16.52■□□□□ 0.24
VRK3-208ENST00000594104 FBLN2P98095 1184 aa16.51■□□□□ 0.23
VRK3-208ENST00000594104 ADCY10Q96PN6 1610 aa16.51■□□□□ 0.23
VRK3-208ENST00000594104 HOMEZQ8IX15 550 aa16.5■□□□□ 0.23
VRK3-208ENST00000594104 CHIC2Q9UKJ5 165 aa16.5■□□□□ 0.23
VRK3-208ENST00000594104 MPHOSPH9Q99550 1183 aa16.5■□□□□ 0.23
VRK3-208ENST00000594104 TRIM52Q96A61 297 aa16.48■□□□□ 0.23
VRK3-208ENST00000594104 ITSN2Q9NZM3 1697 aa16.48■□□□□ 0.23
VRK3-208ENST00000594104 PLB1Q6P1J6 1458 aa16.47■□□□□ 0.23
VRK3-208ENST00000594104 PRG4Q92954 1404 aaPredicted RBP16.46■□□□□ 0.23
VRK3-208ENST00000594104 KDM5BQ9UGL1 1544 aa16.46■□□□□ 0.23
VRK3-208ENST00000594104 ABCA8O94911 1581 aa16.46■□□□□ 0.23
VRK3-208ENST00000594104 CCER2I3L3R5 266 aa16.46■□□□□ 0.23
VRK3-208ENST00000594104 DENND4BO75064 1496 aaPredicted RBP16.46■□□□□ 0.23
VRK3-208ENST00000594104 GPATCH8Q9UKJ3 1502 aaKnown RBP16.46■□□□□ 0.23
VRK3-208ENST00000594104 CFDP1Q9UEE9 299 aaPredicted RBP16.45■□□□□ 0.22
VRK3-208ENST00000594104 DDX10Q13206 875 aaKnown RBP16.45■□□□□ 0.22
VRK3-208ENST00000594104 ADGRL2O95490 1459 aa16.45■□□□□ 0.22
VRK3-208ENST00000594104 ARID3CA6NKF2 412 aa16.44■□□□□ 0.22
VRK3-208ENST00000594104 PLEKHD1A6NEE1 506 aa16.43■□□□□ 0.22
VRK3-208ENST00000594104 KDM6BO15054 1643 aa16.42■□□□□ 0.22
VRK3-208ENST00000594104 CAMSAP2Q08AD1 1489 aa16.42■□□□□ 0.22
VRK3-208ENST00000594104 ANKRD30BQ9BXX2 1392 aa16.42■□□□□ 0.22
VRK3-208ENST00000594104 NCOA1Q15788 1441 aa16.41■□□□□ 0.22
VRK3-208ENST00000594104 ZNF644Q9H582 1327 aaPredicted RBP16.4■□□□□ 0.22
VRK3-208ENST00000594104 SLC4A2P04920 1241 aa16.4■□□□□ 0.22
VRK3-208ENST00000594104 ATP10BO94823 1461 aa16.39■□□□□ 0.21
VRK3-208ENST00000594104 ANP32CO43423 234 aa16.39■□□□□ 0.21
VRK3-208ENST00000594104 RPRD2Q5VT52 1461 aaKnown RBP16.39■□□□□ 0.21
VRK3-208ENST00000594104 ANKRD30AQ9BXX3 1397 aa16.38■□□□□ 0.21
VRK3-208ENST00000594104 ABCC10Q5T3U5 1492 aa16.38■□□□□ 0.21
VRK3-208ENST00000594104 SHANK2Q9UPX8 1470 aa16.38■□□□□ 0.21
VRK3-208ENST00000594104 ADGBQ8N7X0 1667 aa16.38■□□□□ 0.21
VRK3-208ENST00000594104 KIF14Q15058 1648 aa16.37■□□□□ 0.21
VRK3-208ENST00000594104 PTPRGP23470 1445 aa16.36■□□□□ 0.21
VRK3-208ENST00000594104 EIF4G2P78344 907 aaKnown RBP eCLIP16.34■□□□□ 0.21
VRK3-208ENST00000594104 CROCC2H7BZ55 1655 aa16.34■□□□□ 0.21
VRK3-208ENST00000594104 L3MBTL2Q969R5 705 aa16.33■□□□□ 0.2
VRK3-208ENST00000594104 RSPH4AQ5TD94 716 aa16.33■□□□□ 0.2
VRK3-208ENST00000594104 ERICH6Q7L0X2 663 aa16.32■□□□□ 0.2
VRK3-208ENST00000594104 PZPP20742 1482 aa16.32■□□□□ 0.2
VRK3-208ENST00000594104 HSPA5P11021 654 aaKnown RBP16.3■□□□□ 0.2
VRK3-208ENST00000594104 KIAA1107Q9UPP5 1409 aa16.3■□□□□ 0.2
VRK3-208ENST00000594104 ARHGEF5Q12774 1597 aa16.3■□□□□ 0.2
VRK3-208ENST00000594104 TEX14Q8IWB6 1497 aa16.29■□□□□ 0.2
VRK3-208ENST00000594104 ANKRD50Q9ULJ7 1429 aa16.29■□□□□ 0.2
VRK3-208ENST00000594104 HIRIP3Q9BW71 556 aaPredicted RBP16.28■□□□□ 0.2
VRK3-208ENST00000594104 CDC42BPAQ5VT25 1732 aa16.28■□□□□ 0.2
VRK3-208ENST00000594104 MYCNP04198 464 aaPredicted RBP16.27■□□□□ 0.2
VRK3-208ENST00000594104 TSPY4P0CV99 314 aa16.27■□□□□ 0.2
VRK3-208ENST00000594104 TSPY10P0CW01 314 aa16.27■□□□□ 0.2
VRK3-208ENST00000594104 SHROOM2Q13796 1616 aa16.27■□□□□ 0.2
VRK3-208ENST00000594104 ZNF777Q9ULD5 760 aaPredicted RBP16.27■□□□□ 0.19
VRK3-208ENST00000594104 C9orf84Q5VXU9 1444 aa16.26■□□□□ 0.19
VRK3-208ENST00000594104 KDM5DQ9BY66 1539 aa16.25■□□□□ 0.19
VRK3-208ENST00000594104 KCNH8Q96L42 1107 aa16.25■□□□□ 0.19
VRK3-208ENST00000594104 WASHC2AQ641Q2 1341 aa16.23■□□□□ 0.19
VRK3-208ENST00000594104 RNF216Q9NWF9 866 aaPredicted RBP16.22■□□□□ 0.19
VRK3-208ENST00000594104 MBD5Q9P267 1494 aa16.22■□□□□ 0.19
VRK3-208ENST00000594104 TMEM132AQ24JP5 1023 aa16.21■□□□□ 0.19
VRK3-208ENST00000594104 SPATA31E1Q6ZUB1 1445 aa16.21■□□□□ 0.19
VRK3-208ENST00000594104 PKD2Q13563 968 aa16.2■□□□□ 0.18
VRK3-208ENST00000594104 CCDC141Q6ZP82 1450 aa16.2■□□□□ 0.18
VRK3-208ENST00000594104 NBPF8Q3BBV2 869 aa16.2■□□□□ 0.18
VRK3-208ENST00000594104 SUPT16HQ9Y5B9 1047 aaKnown RBP16.2■□□□□ 0.18
VRK3-208ENST00000594104 CHD1O14646 1710 aa16.2■□□□□ 0.18
VRK3-208ENST00000594104 PLEKHH2Q8IVE3 1493 aa16.19■□□□□ 0.18
VRK3-208ENST00000594104 CCDC7Q96M83 1385 aa16.19■□□□□ 0.18
VRK3-208ENST00000594104 CNTLNQ9NXG0 1405 aa16.19■□□□□ 0.18
VRK3-208ENST00000594104 PAXIP1Q6ZW49 1069 aaPredicted RBP16.19■□□□□ 0.18
VRK3-208ENST00000594104 PREX2Q70Z35 1606 aa16.19■□□□□ 0.18
VRK3-208ENST00000594104 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.18■□□□□ 0.18
VRK3-208ENST00000594104 ARID4BQ4LE39 1312 aaPredicted RBP16.18■□□□□ 0.18
VRK3-208ENST00000594104 NUP155O75694 1391 aa16.18■□□□□ 0.18
VRK3-208ENST00000594104 KIF15Q9NS87 1388 aa16.18■□□□□ 0.18
VRK3-208ENST00000594104 UHRF1BP1Q6BDS2 1440 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms