RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 SIGLEC1Q9BZZ2 1709 aa18.77■□□□□ 0.59
ZNF540-209ENST00000590588 SAMD9Q5K651 1589 aa18.76■□□□□ 0.59
ZNF540-209ENST00000590588 PREX1Q8TCU6 1659 aa18.76■□□□□ 0.59
ZNF540-209ENST00000590588 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.74■□□□□ 0.59
ZNF540-209ENST00000590588 ATP10AO60312 1499 aa18.74■□□□□ 0.59
ZNF540-209ENST00000590588 HECW1Q76N89 1606 aa18.74■□□□□ 0.59
ZNF540-209ENST00000590588 ARHGEF12Q9NZN5 1544 aa18.74■□□□□ 0.59
ZNF540-209ENST00000590588 UHRF1BP1Q6BDS2 1440 aa18.74■□□□□ 0.59
ZNF540-209ENST00000590588 SCAPERQ9BY12 1400 aa18.74■□□□□ 0.59
ZNF540-209ENST00000590588 STRCQ7RTU9 1775 aa18.73■□□□□ 0.59
ZNF540-209ENST00000590588 PTPRTO14522 1441 aa18.72■□□□□ 0.59
ZNF540-209ENST00000590588 C9orf84Q5VXU9 1444 aa18.71■□□□□ 0.59
ZNF540-209ENST00000590588 RANGAP1P46060 587 aaPredicted RBP18.69■□□□□ 0.58
ZNF540-209ENST00000590588 SETD1BQ9UPS6 1966 aaKnown RBP18.68■□□□□ 0.58
ZNF540-209ENST00000590588 PLCH2O75038 1416 aa18.68■□□□□ 0.58
ZNF540-209ENST00000590588 CSRNP3Q8WYN3 585 aa18.67■□□□□ 0.58
ZNF540-209ENST00000590588 EFCAB2Q5VUJ9 269 aa18.66■□□□□ 0.58
ZNF540-209ENST00000590588 IQSEC2Q5JU85 1478 aa18.65■□□□□ 0.58
ZNF540-209ENST00000590588 LTBP4Q8N2S1 1624 aa18.62■□□□□ 0.57
ZNF540-209ENST00000590588 ESF1Q9H501 851 aaKnown RBP18.61■□□□□ 0.57
ZNF540-209ENST00000590588 MYT1LQ9UL68 1186 aa18.61■□□□□ 0.57
ZNF540-209ENST00000590588 AFAP1Q8N556 730 aa18.59■□□□□ 0.57
ZNF540-209ENST00000590588 TRAPPC8Q9Y2L5 1435 aa18.57■□□□□ 0.56
ZNF540-209ENST00000590588 ZNF518AQ6AHZ1 1483 aa18.57■□□□□ 0.56
ZNF540-209ENST00000590588 UBAP1LF5GYI3 381 aa18.56■□□□□ 0.56
ZNF540-209ENST00000590588 CDK11AQ9UQ88 783 aaPredicted RBP18.54■□□□□ 0.56
ZNF540-209ENST00000590588 NCOA1Q15788 1441 aa18.54■□□□□ 0.56
ZNF540-209ENST00000590588 CDK13Q14004 1512 aaKnown RBP18.52■□□□□ 0.56
ZNF540-209ENST00000590588 ATP1B4Q9UN42 357 aaPredicted RBP18.51■□□□□ 0.55
ZNF540-209ENST00000590588 C3P01024 1663 aa18.5■□□□□ 0.55
ZNF540-209ENST00000590588 KDM5CP41229 1560 aa18.49■□□□□ 0.55
ZNF540-209ENST00000590588 REREQ9P2R6 1566 aa18.48■□□□□ 0.55
ZNF540-209ENST00000590588 ZNF335Q9H4Z2 1342 aaPredicted RBP18.48■□□□□ 0.55
ZNF540-209ENST00000590588 MYO5CQ9NQX4 1742 aa18.47■□□□□ 0.55
ZNF540-209ENST00000590588 CNTLNQ9NXG0 1405 aa18.47■□□□□ 0.55
ZNF540-209ENST00000590588 NCKAP5LQ9HCH0 1330 aa18.47■□□□□ 0.55
ZNF540-209ENST00000590588 DIP2CQ9Y2E4 1556 aa18.47■□□□□ 0.55
ZNF540-209ENST00000590588 MLH3Q9UHC1 1453 aa18.46■□□□□ 0.55
ZNF540-209ENST00000590588 AGLP35573 1532 aa18.46■□□□□ 0.55
ZNF540-209ENST00000590588 ARHGAP5Q13017 1502 aa18.45■□□□□ 0.54
ZNF540-209ENST00000590588 CAMSAP1Q5T5Y3 1602 aa18.45■□□□□ 0.54
ZNF540-209ENST00000590588 PKD2Q13563 968 aa18.44■□□□□ 0.54
ZNF540-209ENST00000590588 NPATQ14207 1427 aa18.42■□□□□ 0.54
ZNF540-209ENST00000590588 ZMYM3Q14202 1370 aa18.41■□□□□ 0.54
ZNF540-209ENST00000590588 EEA1Q15075 1411 aa18.4■□□□□ 0.54
ZNF540-209ENST00000590588 ABCA6Q8N139 1617 aa18.39■□□□□ 0.53
ZNF540-209ENST00000590588 TROQ12816 1431 aaPredicted RBP18.39■□□□□ 0.53
ZNF540-209ENST00000590588 FMN1Q68DA7 1419 aa18.39■□□□□ 0.53
ZNF540-209ENST00000590588 KIF14Q15058 1648 aa18.38■□□□□ 0.53
ZNF540-209ENST00000590588 HSPA1LP34931 641 aa18.38■□□□□ 0.53
ZNF540-209ENST00000590588 CLIP1P30622 1438 aa18.38■□□□□ 0.53
ZNF540-209ENST00000590588 SCAF1Q9H7N4 1312 aaKnown RBP18.37■□□□□ 0.53
ZNF540-209ENST00000590588 TOM1O60784 492 aa18.36■□□□□ 0.53
ZNF540-209ENST00000590588 PPP6R1Q9UPN7 881 aa18.35■□□□□ 0.53
ZNF540-209ENST00000590588 PLA2R1Q13018 1463 aa18.34■□□□□ 0.53
ZNF540-209ENST00000590588 PIP4K2BP78356 416 aa18.34■□□□□ 0.53
ZNF540-209ENST00000590588 PHF23Q9BUL5 403 aaPredicted RBP18.32■□□□□ 0.52
ZNF540-209ENST00000590588 MED1Q15648 1581 aaPredicted RBP18.32■□□□□ 0.52
ZNF540-209ENST00000590588 TCOF1Q13428 1488 aaKnown RBP18.31■□□□□ 0.52
ZNF540-209ENST00000590588 MROH2AA6NES4 1674 aa18.31■□□□□ 0.52
ZNF540-209ENST00000590588 CDC42BPBQ9Y5S2 1711 aa18.29■□□□□ 0.52
ZNF540-209ENST00000590588 KIDINS220Q9ULH0 1771 aa18.29■□□□□ 0.52
ZNF540-209ENST00000590588 ABCC1P33527 1531 aa18.28■□□□□ 0.52
ZNF540-209ENST00000590588 UBTFP17480 764 aaKnown RBP18.27■□□□□ 0.52
ZNF540-209ENST00000590588 SPAG9O60271 1321 aaKnown RBP18.25■□□□□ 0.51
ZNF540-209ENST00000590588 PTPRKQ15262 1439 aa18.25■□□□□ 0.51
ZNF540-209ENST00000590588 CEP170BQ9Y4F5 1589 aaPredicted RBP18.25■□□□□ 0.51
ZNF540-209ENST00000590588 ITSN2Q9NZM3 1697 aa18.25■□□□□ 0.51
ZNF540-209ENST00000590588 GGT6Q6P531 493 aa18.24■□□□□ 0.51
ZNF540-209ENST00000590588 ZNF142P52746 1687 aaPredicted RBP18.24■□□□□ 0.51
ZNF540-209ENST00000590588 ARHGAP35Q9NRY4 1499 aa18.23■□□□□ 0.51
ZNF540-209ENST00000590588 ZNF777Q9ULD5 760 aaPredicted RBP18.23■□□□□ 0.51
ZNF540-209ENST00000590588 PREX2Q70Z35 1606 aa18.23■□□□□ 0.51
ZNF540-209ENST00000590588 MYO3AQ8NEV4 1616 aa18.23■□□□□ 0.51
ZNF540-209ENST00000590588 SUPT6HQ7KZ85 1726 aaKnown RBP18.22■□□□□ 0.51
ZNF540-209ENST00000590588 CPS1P31327 1500 aa18.22■□□□□ 0.51
ZNF540-209ENST00000590588 SAMD9LQ8IVG5 1584 aa18.21■□□□□ 0.51
ZNF540-209ENST00000590588 HNRNPMP52272 730 aaKnown RBP eCLIP18.2■□□□□ 0.5
ZNF540-209ENST00000590588 EHMT2Q96KQ7 1210 aa18.2■□□□□ 0.5
ZNF540-209ENST00000590588 CLTCQ00610 1675 aaKnown RBP18.19■□□□□ 0.5
ZNF540-209ENST00000590588 SHANK2Q9UPX8 1470 aa18.19■□□□□ 0.5
ZNF540-209ENST00000590588 A2ML1A8K2U0 1454 aa18.18■□□□□ 0.5
ZNF540-209ENST00000590588 A2MP01023 1474 aa18.17■□□□□ 0.5
ZNF540-209ENST00000590588 ANKLE2Q86XL3 938 aa18.15■□□□□ 0.5
ZNF540-209ENST00000590588 DNMT1P26358 1616 aaKnown RBP18.14■□□□□ 0.49
ZNF540-209ENST00000590588 LRRIQ1Q96JM4 1722 aa18.14■□□□□ 0.49
ZNF540-209ENST00000590588 CCDC18Q5T9S5 1454 aa18.14■□□□□ 0.49
ZNF540-209ENST00000590588 KIAA1107Q9UPP5 1409 aa18.12■□□□□ 0.49
ZNF540-209ENST00000590588 ATP7AQ04656 1500 aa18.12■□□□□ 0.49
ZNF540-209ENST00000590588 SYCP2Q9BX26 1530 aa18.12■□□□□ 0.49
ZNF540-209ENST00000590588 PLXNC1O60486 1568 aa18.12■□□□□ 0.49
ZNF540-209ENST00000590588 CDC42BPAQ5VT25 1732 aa18.12■□□□□ 0.49
ZNF540-209ENST00000590588 THEMISQ8N1K5 641 aaPredicted RBP18.11■□□□□ 0.49
ZNF540-209ENST00000590588 CFDP1Q9UEE9 299 aaPredicted RBP18.1■□□□□ 0.49
ZNF540-209ENST00000590588 GPATCH8Q9UKJ3 1502 aaKnown RBP18.09■□□□□ 0.49
ZNF540-209ENST00000590588 CASKIN1Q8WXD9 1431 aa18.09■□□□□ 0.49
ZNF540-209ENST00000590588 SENP3Q9H4L4 574 aaPredicted RBP18.09■□□□□ 0.49
ZNF540-209ENST00000590588 PLEKHH2Q8IVE3 1493 aa18.08■□□□□ 0.49
ZNF540-209ENST00000590588 TNRQ92752 1358 aa18.08■□□□□ 0.49
ZNF540-209ENST00000590588 FBXO31Q5XUX0 539 aaPredicted RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms