RNA–Protein interactions for RNA: ENST00000589897.1

TPM4-211, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-211ENST00000589897 RIMS1Q86UR5 1692 aaKnown RBP13.47□□□□□ -0.25
TPM4-211ENST00000589897 HECW1Q76N89 1606 aa13.47□□□□□ -0.25
TPM4-211ENST00000589897 MAGI2Q86UL8 1455 aa13.47□□□□□ -0.25
TPM4-211ENST00000589897 CDK13Q14004 1512 aaKnown RBP13.46□□□□□ -0.25
TPM4-211ENST00000589897 PTPRTO14522 1441 aa13.46□□□□□ -0.26
TPM4-211ENST00000589897 UHRF1BP1Q6BDS2 1440 aa13.44□□□□□ -0.26
TPM4-211ENST00000589897 ARHGEF40Q8TER5 1519 aa13.43□□□□□ -0.26
TPM4-211ENST00000589897 FRMPD1Q5SYB0 1578 aa13.42□□□□□ -0.26
TPM4-211ENST00000589897 CFAP74Q9C0B2 1584 aa13.42□□□□□ -0.26
TPM4-211ENST00000589897 ESF1Q9H501 851 aaKnown RBP13.42□□□□□ -0.26
TPM4-211ENST00000589897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.42□□□□□ -0.26
TPM4-211ENST00000589897 IQSEC2Q5JU85 1478 aa13.42□□□□□ -0.26
TPM4-211ENST00000589897 UBAP1LF5GYI3 381 aa13.41□□□□□ -0.26
TPM4-211ENST00000589897 CLIP1P30622 1438 aa13.4□□□□□ -0.26
TPM4-211ENST00000589897 TTC37Q6PGP7 1564 aa13.4□□□□□ -0.26
TPM4-211ENST00000589897 ATP10AO60312 1499 aa13.39□□□□□ -0.27
TPM4-211ENST00000589897 ZFYVE16Q7Z3T8 1539 aa13.39□□□□□ -0.27
TPM4-211ENST00000589897 SCAPERQ9BY12 1400 aa13.37□□□□□ -0.27
TPM4-211ENST00000589897 KIF14Q15058 1648 aa13.36□□□□□ -0.27
TPM4-211ENST00000589897 EFCAB2Q5VUJ9 269 aa13.36□□□□□ -0.27
TPM4-211ENST00000589897 MYT1LQ9UL68 1186 aa13.36□□□□□ -0.27
TPM4-211ENST00000589897 CASKIN1Q8WXD9 1431 aa13.36□□□□□ -0.27
TPM4-211ENST00000589897 MYO5CQ9NQX4 1742 aa13.36□□□□□ -0.27
TPM4-211ENST00000589897 CCDC18Q5T9S5 1454 aa13.36□□□□□ -0.27
TPM4-211ENST00000589897 ZMYM4Q5VZL5 1548 aa13.35□□□□□ -0.27
TPM4-211ENST00000589897 PLCH2O75038 1416 aa13.35□□□□□ -0.27
TPM4-211ENST00000589897 TROQ12816 1431 aaPredicted RBP13.35□□□□□ -0.27
TPM4-211ENST00000589897 C9orf84Q5VXU9 1444 aa13.35□□□□□ -0.27
TPM4-211ENST00000589897 ARHGEF12Q9NZN5 1544 aa13.34□□□□□ -0.27
TPM4-211ENST00000589897 LRRIQ1Q96JM4 1722 aa13.33□□□□□ -0.27
TPM4-211ENST00000589897 RICTORQ6R327 1708 aa13.33□□□□□ -0.28
TPM4-211ENST00000589897 SETD1BQ9UPS6 1966 aaKnown RBP13.32□□□□□ -0.28
TPM4-211ENST00000589897 TRAPPC8Q9Y2L5 1435 aa13.32□□□□□ -0.28
TPM4-211ENST00000589897 FYCO1Q9BQS8 1478 aa13.32□□□□□ -0.28
TPM4-211ENST00000589897 ARHGAP5Q13017 1502 aa13.32□□□□□ -0.28
TPM4-211ENST00000589897 LTBP4Q8N2S1 1624 aa13.31□□□□□ -0.28
TPM4-211ENST00000589897 PREX1Q8TCU6 1659 aa13.31□□□□□ -0.28
TPM4-211ENST00000589897 PKD2Q13563 968 aa13.3□□□□□ -0.28
TPM4-211ENST00000589897 PHF23Q9BUL5 403 aaPredicted RBP13.3□□□□□ -0.28
TPM4-211ENST00000589897 STRCQ7RTU9 1775 aa13.3□□□□□ -0.28
TPM4-211ENST00000589897 TOM1O60784 492 aa13.29□□□□□ -0.28
TPM4-211ENST00000589897 AFAP1Q8N556 730 aa13.28□□□□□ -0.28
TPM4-211ENST00000589897 FER1L4A9Z1Z3 1794 aa13.27□□□□□ -0.28
TPM4-211ENST00000589897 ZNF335Q9H4Z2 1342 aaPredicted RBP13.27□□□□□ -0.29
TPM4-211ENST00000589897 NCOA1Q15788 1441 aa13.27□□□□□ -0.29
TPM4-211ENST00000589897 HSPA1LP34931 641 aa13.26□□□□□ -0.29
TPM4-211ENST00000589897 SCAF1Q9H7N4 1312 aaKnown RBP13.26□□□□□ -0.29
TPM4-211ENST00000589897 CEP162Q5TB80 1403 aa13.25□□□□□ -0.29
TPM4-211ENST00000589897 NCKAP5LQ9HCH0 1330 aa13.25□□□□□ -0.29
TPM4-211ENST00000589897 ZNF518AQ6AHZ1 1483 aa13.24□□□□□ -0.29
TPM4-211ENST00000589897 MTUS2Q5JR59 1369 aa13.24□□□□□ -0.29
TPM4-211ENST00000589897 PIP4K2BP78356 416 aa13.24□□□□□ -0.29
TPM4-211ENST00000589897 ZNF777Q9ULD5 760 aaPredicted RBP13.24□□□□□ -0.29
TPM4-211ENST00000589897 CDC42BPBQ9Y5S2 1711 aa13.24□□□□□ -0.29
TPM4-211ENST00000589897 PREX2Q70Z35 1606 aa13.24□□□□□ -0.29
TPM4-211ENST00000589897 CNTLNQ9NXG0 1405 aa13.23□□□□□ -0.29
TPM4-211ENST00000589897 LOC105371045A0A1W2PR82 267 aa13.21□□□□□ -0.29
TPM4-211ENST00000589897 CDC42BPAQ5VT25 1732 aa13.21□□□□□ -0.3
TPM4-211ENST00000589897 SIGLEC1Q9BZZ2 1709 aa13.21□□□□□ -0.3
TPM4-211ENST00000589897 PPP6R1Q9UPN7 881 aa13.2□□□□□ -0.3
TPM4-211ENST00000589897 CCNB3Q8WWL7 1395 aa13.2□□□□□ -0.3
TPM4-211ENST00000589897 CFDP1Q9UEE9 299 aaPredicted RBP13.19□□□□□ -0.3
TPM4-211ENST00000589897 NPATQ14207 1427 aa13.19□□□□□ -0.3
TPM4-211ENST00000589897 ZMYM3Q14202 1370 aa13.18□□□□□ -0.3
TPM4-211ENST00000589897 ITSN2Q9NZM3 1697 aa13.17□□□□□ -0.3
TPM4-211ENST00000589897 ABCC1P33527 1531 aa13.17□□□□□ -0.3
TPM4-211ENST00000589897 KDM5CP41229 1560 aa13.16□□□□□ -0.3
TPM4-211ENST00000589897 GPATCH8Q9UKJ3 1502 aaKnown RBP13.16□□□□□ -0.3
TPM4-211ENST00000589897 AGLP35573 1532 aa13.14□□□□□ -0.31
TPM4-211ENST00000589897 EHBP1L1Q8N3D4 1523 aa13.14□□□□□ -0.31
TPM4-211ENST00000589897 CAMSAP1Q5T5Y3 1602 aa13.14□□□□□ -0.31
TPM4-211ENST00000589897 HNRNPMP52272 730 aaKnown RBP eCLIP13.14□□□□□ -0.31
TPM4-211ENST00000589897 PLEKHH2Q8IVE3 1493 aa13.14□□□□□ -0.31
TPM4-211ENST00000589897 MLH3Q9UHC1 1453 aa13.14□□□□□ -0.31
TPM4-211ENST00000589897 MED1Q15648 1581 aaPredicted RBP13.13□□□□□ -0.31
TPM4-211ENST00000589897 SPAG9O60271 1321 aaKnown RBP13.13□□□□□ -0.31
TPM4-211ENST00000589897 SAMD9LQ8IVG5 1584 aa13.12□□□□□ -0.31
TPM4-211ENST00000589897 DIP2CQ9Y2E4 1556 aa13.12□□□□□ -0.31
TPM4-211ENST00000589897 PLA2R1Q13018 1463 aa13.12□□□□□ -0.31
TPM4-211ENST00000589897 SYCP2Q9BX26 1530 aa13.12□□□□□ -0.31
TPM4-211ENST00000589897 REREQ9P2R6 1566 aa13.11□□□□□ -0.31
TPM4-211ENST00000589897 ABCA6Q8N139 1617 aa13.1□□□□□ -0.31
TPM4-211ENST00000589897 PTPRKQ15262 1439 aa13.1□□□□□ -0.31
TPM4-211ENST00000589897 VPS8Q8N3P4 1428 aa13.1□□□□□ -0.31
TPM4-211ENST00000589897 KIAA1107Q9UPP5 1409 aa13.1□□□□□ -0.31
TPM4-211ENST00000589897 SUPT6HQ7KZ85 1726 aaKnown RBP13.1□□□□□ -0.31
TPM4-211ENST00000589897 APLP2Q06481 763 aa13.09□□□□□ -0.31
TPM4-211ENST00000589897 KIDINS220Q9ULH0 1771 aa13.09□□□□□ -0.31
TPM4-211ENST00000589897 C3P01024 1663 aa13.08□□□□□ -0.31
TPM4-211ENST00000589897 TIAM1Q13009 1591 aa13.08□□□□□ -0.32
TPM4-211ENST00000589897 ANKLE2Q86XL3 938 aa13.07□□□□□ -0.32
TPM4-211ENST00000589897 TCOF1Q13428 1488 aaKnown RBP13.07□□□□□ -0.32
TPM4-211ENST00000589897 NCOA2Q15596 1464 aa13.06□□□□□ -0.32
TPM4-211ENST00000589897 ATP7AQ04656 1500 aa13.06□□□□□ -0.32
TPM4-211ENST00000589897 ZNF644Q9H582 1327 aaPredicted RBP13.06□□□□□ -0.32
TPM4-211ENST00000589897 CPS1P31327 1500 aa13.05□□□□□ -0.32
TPM4-211ENST00000589897 GGT6Q6P531 493 aa13.05□□□□□ -0.32
TPM4-211ENST00000589897 SHANK2Q9UPX8 1470 aa13.04□□□□□ -0.32
TPM4-211ENST00000589897 THEMISQ8N1K5 641 aaPredicted RBP13.03□□□□□ -0.32
TPM4-211ENST00000589897 LRRC9Q6ZRR7 1453 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms