RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 DISP3Q9P2K9 1392 aa30.75■■■□□ 2.51
TOP3A-220ENST00000585031 MAGI2Q86UL8 1455 aa30.71■■■□□ 2.51
TOP3A-220ENST00000585031 CDK13Q14004 1512 aaKnown RBP30.69■■■□□ 2.5
TOP3A-220ENST00000585031 SCAPERQ9BY12 1400 aa30.68■■■□□ 2.5
TOP3A-220ENST00000585031 ARHGEF12Q9NZN5 1544 aa30.67■■■□□ 2.5
TOP3A-220ENST00000585031 CEBPAP49715 358 aaPredicted RBP30.65■■■□□ 2.5
TOP3A-220ENST00000585031 STRCQ7RTU9 1775 aa30.64■■■□□ 2.5
TOP3A-220ENST00000585031 DMRT2Q9Y5R5 561 aa30.64■■■□□ 2.5
TOP3A-220ENST00000585031 PLCH2O75038 1416 aa30.64■■■□□ 2.49
TOP3A-220ENST00000585031 PREX1Q8TCU6 1659 aa30.63■■■□□ 2.49
TOP3A-220ENST00000585031 ATP10AO60312 1499 aa30.61■■■□□ 2.49
TOP3A-220ENST00000585031 C9orf84Q5VXU9 1444 aa30.55■■■□□ 2.48
TOP3A-220ENST00000585031 MYO5CQ9NQX4 1742 aa30.51■■■□□ 2.47
TOP3A-220ENST00000585031 EEA1Q15075 1411 aa30.49■■■□□ 2.47
TOP3A-220ENST00000585031 SETD1BQ9UPS6 1966 aaKnown RBP30.48■■■□□ 2.47
TOP3A-220ENST00000585031 KIF14Q15058 1648 aa30.47■■■□□ 2.47
TOP3A-220ENST00000585031 EFCAB2Q5VUJ9 269 aa30.47■■■□□ 2.47
TOP3A-220ENST00000585031 AFAP1Q8N556 730 aa30.45■■■□□ 2.47
TOP3A-220ENST00000585031 PTPRTO14522 1441 aa30.43■■■□□ 2.46
TOP3A-220ENST00000585031 KDM5CP41229 1560 aa30.42■■■□□ 2.46
TOP3A-220ENST00000585031 UHRF1BP1Q6BDS2 1440 aa30.42■■■□□ 2.46
TOP3A-220ENST00000585031 ATP1B4Q9UN42 357 aaPredicted RBP30.4■■■□□ 2.46
TOP3A-220ENST00000585031 DIP2CQ9Y2E4 1556 aa30.4■■■□□ 2.46
TOP3A-220ENST00000585031 ZNF518AQ6AHZ1 1483 aa30.39■■■□□ 2.46
TOP3A-220ENST00000585031 C3P01024 1663 aa30.39■■■□□ 2.45
TOP3A-220ENST00000585031 LRRIQ1Q96JM4 1722 aa30.36■■■□□ 2.45
TOP3A-220ENST00000585031 SPATA31D1Q6ZQQ2 1576 aa30.35■■■□□ 2.45
TOP3A-220ENST00000585031 ABCA6Q8N139 1617 aa30.35■■■□□ 2.45
TOP3A-220ENST00000585031 CDC42BPBQ9Y5S2 1711 aa30.33■■■□□ 2.45
TOP3A-220ENST00000585031 ARHGAP5Q13017 1502 aa30.33■■■□□ 2.45
TOP3A-220ENST00000585031 EHMT2Q96KQ7 1210 aa30.33■■■□□ 2.45
TOP3A-220ENST00000585031 LTBP4Q8N2S1 1624 aa30.32■■■□□ 2.44
TOP3A-220ENST00000585031 REREQ9P2R6 1566 aa30.32■■■□□ 2.44
TOP3A-220ENST00000585031 ARHGAP35Q9NRY4 1499 aa30.31■■■□□ 2.44
TOP3A-220ENST00000585031 TROQ12816 1431 aaPredicted RBP30.3■■■□□ 2.44
TOP3A-220ENST00000585031 FMN1Q68DA7 1419 aa30.28■■■□□ 2.44
TOP3A-220ENST00000585031 IQSEC2Q5JU85 1478 aa30.27■■■□□ 2.44
TOP3A-220ENST00000585031 MYT1LQ9UL68 1186 aa30.26■■■□□ 2.43
TOP3A-220ENST00000585031 MLH3Q9UHC1 1453 aa30.25■■■□□ 2.43
TOP3A-220ENST00000585031 TRAPPC8Q9Y2L5 1435 aa30.25■■■□□ 2.43
TOP3A-220ENST00000585031 CDK11AQ9UQ88 783 aaPredicted RBP30.25■■■□□ 2.43
TOP3A-220ENST00000585031 AGLP35573 1532 aa30.22■■■□□ 2.43
TOP3A-220ENST00000585031 KIDINS220Q9ULH0 1771 aa30.2■■■□□ 2.42
TOP3A-220ENST00000585031 UBTFP17480 764 aaKnown RBP30.19■■■□□ 2.42
TOP3A-220ENST00000585031 NCOA1Q15788 1441 aa30.19■■■□□ 2.42
TOP3A-220ENST00000585031 ABCC1P33527 1531 aa30.18■■■□□ 2.42
TOP3A-220ENST00000585031 ITSN2Q9NZM3 1697 aa30.18■■■□□ 2.42
TOP3A-220ENST00000585031 PREX2Q70Z35 1606 aa30.17■■■□□ 2.42
TOP3A-220ENST00000585031 ESF1Q9H501 851 aaKnown RBP30.16■■■□□ 2.42
TOP3A-220ENST00000585031 CLIP1P30622 1438 aa30.15■■■□□ 2.42
TOP3A-220ENST00000585031 CAMSAP1Q5T5Y3 1602 aa30.1■■■□□ 2.41
TOP3A-220ENST00000585031 CDC42BPAQ5VT25 1732 aa30.1■■■□□ 2.41
TOP3A-220ENST00000585031 CNTLNQ9NXG0 1405 aa30.07■■■□□ 2.4
TOP3A-220ENST00000585031 NCKAP5LQ9HCH0 1330 aa30.06■■■□□ 2.4
TOP3A-220ENST00000585031 UBAP1LF5GYI3 381 aa30.05■■■□□ 2.4
TOP3A-220ENST00000585031 MROH2AA6NES4 1674 aa30.04■■■□□ 2.4
TOP3A-220ENST00000585031 SAMD9LQ8IVG5 1584 aa30.03■■■□□ 2.4
TOP3A-220ENST00000585031 ZNF335Q9H4Z2 1342 aaPredicted RBP30.03■■■□□ 2.4
TOP3A-220ENST00000585031 NPATQ14207 1427 aa30.03■■■□□ 2.4
TOP3A-220ENST00000585031 ZMYM3Q14202 1370 aa30.02■■■□□ 2.4
TOP3A-220ENST00000585031 SUPT6HQ7KZ85 1726 aaKnown RBP30.01■■■□□ 2.39
TOP3A-220ENST00000585031 CLTCQ00610 1675 aaKnown RBP29.97■■■□□ 2.39
TOP3A-220ENST00000585031 PKD2Q13563 968 aa29.96■■■□□ 2.39
TOP3A-220ENST00000585031 CASKIN1Q8WXD9 1431 aa29.96■■■□□ 2.39
TOP3A-220ENST00000585031 SYCP2Q9BX26 1530 aa29.93■■■□□ 2.38
TOP3A-220ENST00000585031 ZNF142P52746 1687 aaPredicted RBP29.93■■■□□ 2.38
TOP3A-220ENST00000585031 HNRNPMP52272 730 aaKnown RBP eCLIP29.93■■■□□ 2.38
TOP3A-220ENST00000585031 ZNF777Q9ULD5 760 aaPredicted RBP29.93■■■□□ 2.38
TOP3A-220ENST00000585031 MYO3AQ8NEV4 1616 aa29.92■■■□□ 2.38
TOP3A-220ENST00000585031 CCDC18Q5T9S5 1454 aa29.92■■■□□ 2.38
TOP3A-220ENST00000585031 SPAG9O60271 1321 aaKnown RBP29.89■■■□□ 2.38
TOP3A-220ENST00000585031 PTPRKQ15262 1439 aa29.88■■■□□ 2.37
TOP3A-220ENST00000585031 TCOF1Q13428 1488 aaKnown RBP29.88■■■□□ 2.37
TOP3A-220ENST00000585031 GPATCH8Q9UKJ3 1502 aaKnown RBP29.88■■■□□ 2.37
TOP3A-220ENST00000585031 PLXNC1O60486 1568 aa29.88■■■□□ 2.37
TOP3A-220ENST00000585031 PLA2R1Q13018 1463 aa29.87■■■□□ 2.37
TOP3A-220ENST00000585031 CEP170BQ9Y4F5 1589 aaPredicted RBP29.87■■■□□ 2.37
TOP3A-220ENST00000585031 ATP7AQ04656 1500 aa29.86■■■□□ 2.37
TOP3A-220ENST00000585031 INO80Q9ULG1 1556 aaPredicted RBP29.85■■■□□ 2.37
TOP3A-220ENST00000585031 HSPA1LP34931 641 aa29.82■■■□□ 2.36
TOP3A-220ENST00000585031 A2MP01023 1474 aa29.81■■■□□ 2.36
TOP3A-220ENST00000585031 GGT6Q6P531 493 aa29.79■■■□□ 2.36
TOP3A-220ENST00000585031 PPP6R1Q9UPN7 881 aa29.79■■■□□ 2.36
TOP3A-220ENST00000585031 FYCO1Q9BQS8 1478 aa29.76■■■□□ 2.35
TOP3A-220ENST00000585031 KIAA1107Q9UPP5 1409 aa29.76■■■□□ 2.35
TOP3A-220ENST00000585031 CHIC1Q5VXU3 224 aa29.75■■■□□ 2.35
TOP3A-220ENST00000585031 DNMT1P26358 1616 aaKnown RBP29.74■■■□□ 2.35
TOP3A-220ENST00000585031 TOM1O60784 492 aa29.72■■■□□ 2.35
TOP3A-220ENST00000585031 PIP4K2BP78356 416 aa29.71■■■□□ 2.35
TOP3A-220ENST00000585031 CFDP1Q9UEE9 299 aaPredicted RBP29.71■■■□□ 2.35
TOP3A-220ENST00000585031 MED1Q15648 1581 aaPredicted RBP29.7■■■□□ 2.35
TOP3A-220ENST00000585031 A2ML1A8K2U0 1454 aa29.7■■■□□ 2.35
TOP3A-220ENST00000585031 ADGBQ8N7X0 1667 aa29.69■■■□□ 2.34
TOP3A-220ENST00000585031 NEURL4Q96JN8 1562 aa29.69■■■□□ 2.34
TOP3A-220ENST00000585031 ZNF644Q9H582 1327 aaPredicted RBP29.68■■■□□ 2.34
TOP3A-220ENST00000585031 SCAF1Q9H7N4 1312 aaKnown RBP29.68■■■□□ 2.34
TOP3A-220ENST00000585031 PLEKHH2Q8IVE3 1493 aa29.67■■■□□ 2.34
TOP3A-220ENST00000585031 POLR1AO95602 1720 aaPredicted RBP29.65■■■□□ 2.34
TOP3A-220ENST00000585031 FBXO31Q5XUX0 539 aaPredicted RBP29.64■■■□□ 2.34
TOP3A-220ENST00000585031 CCNB3Q8WWL7 1395 aa29.64■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms