RNA–Protein interactions for RNA: ENST00000582370.1

PDLIM1P3-201, Transcript of PDZ and LIM domain 1 pseudogene 3, humanhuman

BASIC

Gene PDLIM1P3, Length 599 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1P3-201ENST00000582370 NUP153P49790 1475 aaKnown RBP14.6□□□□□ -0.07
PDLIM1P3-201ENST00000582370 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.6□□□□□ -0.07
PDLIM1P3-201ENST00000582370 UHRF1BP1Q6BDS2 1440 aa14.58□□□□□ -0.08
PDLIM1P3-201ENST00000582370 PTPRTO14522 1441 aa14.57□□□□□ -0.08
PDLIM1P3-201ENST00000582370 LTBP4Q8N2S1 1624 aa14.56□□□□□ -0.08
PDLIM1P3-201ENST00000582370 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.56□□□□□ -0.08
PDLIM1P3-201ENST00000582370 HNRNPUL2Q1KMD3 747 aaKnown RBP14.56□□□□□ -0.08
PDLIM1P3-201ENST00000582370 C9orf84Q5VXU9 1444 aa14.56□□□□□ -0.08
PDLIM1P3-201ENST00000582370 MLECQ14165 292 aa14.55□□□□□ -0.08
PDLIM1P3-201ENST00000582370 P3H3Q8IVL6 736 aa14.55□□□□□ -0.08
PDLIM1P3-201ENST00000582370 ATP10AO60312 1499 aa14.54□□□□□ -0.08
PDLIM1P3-201ENST00000582370 C3P01024 1663 aa14.53□□□□□ -0.08
PDLIM1P3-201ENST00000582370 MYO5CQ9NQX4 1742 aa14.52□□□□□ -0.09
PDLIM1P3-201ENST00000582370 PLEKHD1A6NEE1 506 aa14.51□□□□□ -0.09
PDLIM1P3-201ENST00000582370 SCAPERQ9BY12 1400 aa14.49□□□□□ -0.09
PDLIM1P3-201ENST00000582370 REREQ9P2R6 1566 aa14.48□□□□□ -0.09
PDLIM1P3-201ENST00000582370 CEBPAP49715 358 aaPredicted RBP14.47□□□□□ -0.09
PDLIM1P3-201ENST00000582370 CHIC1Q5VXU3 224 aa14.47□□□□□ -0.09
PDLIM1P3-201ENST00000582370 PLCH2O75038 1416 aa14.46□□□□□ -0.09
PDLIM1P3-201ENST00000582370 KDM5CP41229 1560 aa14.46□□□□□ -0.09
PDLIM1P3-201ENST00000582370 ZNF518AQ6AHZ1 1483 aa14.44□□□□□ -0.1
PDLIM1P3-201ENST00000582370 DIP2CQ9Y2E4 1556 aa14.44□□□□□ -0.1
PDLIM1P3-201ENST00000582370 NCOA1Q15788 1441 aa14.44□□□□□ -0.1
PDLIM1P3-201ENST00000582370 AGLP35573 1532 aa14.41□□□□□ -0.1
PDLIM1P3-201ENST00000582370 ABCA6Q8N139 1617 aa14.41□□□□□ -0.1
PDLIM1P3-201ENST00000582370 MROH2AA6NES4 1674 aa14.41□□□□□ -0.1
PDLIM1P3-201ENST00000582370 SUPT6HQ7KZ85 1726 aaKnown RBP14.41□□□□□ -0.1
PDLIM1P3-201ENST00000582370 CDK13Q14004 1512 aaKnown RBP14.41□□□□□ -0.1
PDLIM1P3-201ENST00000582370 CAMSAP1Q5T5Y3 1602 aa14.4□□□□□ -0.1
PDLIM1P3-201ENST00000582370 TRAPPC8Q9Y2L5 1435 aa14.4□□□□□ -0.1
PDLIM1P3-201ENST00000582370 MED1Q15648 1581 aaPredicted RBP14.39□□□□□ -0.11
PDLIM1P3-201ENST00000582370 EEA1Q15075 1411 aa14.39□□□□□ -0.11
PDLIM1P3-201ENST00000582370 ZNF142P52746 1687 aaPredicted RBP14.38□□□□□ -0.11
PDLIM1P3-201ENST00000582370 KIF14Q15058 1648 aa14.37□□□□□ -0.11
PDLIM1P3-201ENST00000582370 CNTLNQ9NXG0 1405 aa14.36□□□□□ -0.11
PDLIM1P3-201ENST00000582370 EFCAB2Q5VUJ9 269 aa14.36□□□□□ -0.11
PDLIM1P3-201ENST00000582370 MLH3Q9UHC1 1453 aa14.35□□□□□ -0.11
PDLIM1P3-201ENST00000582370 UBAP1LF5GYI3 381 aa14.34□□□□□ -0.11
PDLIM1P3-201ENST00000582370 ARHGAP5Q13017 1502 aa14.34□□□□□ -0.11
PDLIM1P3-201ENST00000582370 NPATQ14207 1427 aa14.33□□□□□ -0.11
PDLIM1P3-201ENST00000582370 CDC42BPBQ9Y5S2 1711 aa14.33□□□□□ -0.12
PDLIM1P3-201ENST00000582370 ESF1Q9H501 851 aaKnown RBP14.33□□□□□ -0.12
PDLIM1P3-201ENST00000582370 MYO3AQ8NEV4 1616 aa14.33□□□□□ -0.12
PDLIM1P3-201ENST00000582370 ITSN2Q9NZM3 1697 aa14.33□□□□□ -0.12
PDLIM1P3-201ENST00000582370 PLA2R1Q13018 1463 aa14.31□□□□□ -0.12
PDLIM1P3-201ENST00000582370 KIDINS220Q9ULH0 1771 aa14.31□□□□□ -0.12
PDLIM1P3-201ENST00000582370 ZNF335Q9H4Z2 1342 aaPredicted RBP14.3□□□□□ -0.12
PDLIM1P3-201ENST00000582370 ABCC1P33527 1531 aa14.3□□□□□ -0.12
PDLIM1P3-201ENST00000582370 PREX2Q70Z35 1606 aa14.3□□□□□ -0.12
PDLIM1P3-201ENST00000582370 AFAP1Q8N556 730 aa14.29□□□□□ -0.12
PDLIM1P3-201ENST00000582370 CSRNP3Q8WYN3 585 aa14.29□□□□□ -0.12
PDLIM1P3-201ENST00000582370 TCOF1Q13428 1488 aaKnown RBP14.28□□□□□ -0.12
PDLIM1P3-201ENST00000582370 MYT1LQ9UL68 1186 aa14.28□□□□□ -0.12
PDLIM1P3-201ENST00000582370 CEP170BQ9Y4F5 1589 aaPredicted RBP14.28□□□□□ -0.12
PDLIM1P3-201ENST00000582370 RANGAP1P46060 587 aaPredicted RBP14.27□□□□□ -0.13
PDLIM1P3-201ENST00000582370 POLR1AO95602 1720 aaPredicted RBP14.27□□□□□ -0.13
PDLIM1P3-201ENST00000582370 CLTCQ00610 1675 aaKnown RBP14.26□□□□□ -0.13
PDLIM1P3-201ENST00000582370 TROQ12816 1431 aaPredicted RBP14.25□□□□□ -0.13
PDLIM1P3-201ENST00000582370 LRRIQ1Q96JM4 1722 aa14.25□□□□□ -0.13
PDLIM1P3-201ENST00000582370 PKD2Q13563 968 aa14.25□□□□□ -0.13
PDLIM1P3-201ENST00000582370 CDK11AQ9UQ88 783 aaPredicted RBP14.25□□□□□ -0.13
PDLIM1P3-201ENST00000582370 CLIP1P30622 1438 aa14.24□□□□□ -0.13
PDLIM1P3-201ENST00000582370 NCKAP5LQ9HCH0 1330 aa14.24□□□□□ -0.13
PDLIM1P3-201ENST00000582370 FMN1Q68DA7 1419 aa14.24□□□□□ -0.13
PDLIM1P3-201ENST00000582370 CPS1P31327 1500 aa14.23□□□□□ -0.13
PDLIM1P3-201ENST00000582370 CDC42BPAQ5VT25 1732 aa14.21□□□□□ -0.13
PDLIM1P3-201ENST00000582370 HSPA1LP34931 641 aa14.21□□□□□ -0.13
PDLIM1P3-201ENST00000582370 ZMYM3Q14202 1370 aa14.21□□□□□ -0.14
PDLIM1P3-201ENST00000582370 PLXNC1O60486 1568 aa14.19□□□□□ -0.14
PDLIM1P3-201ENST00000582370 SAMD9LQ8IVG5 1584 aa14.19□□□□□ -0.14
PDLIM1P3-201ENST00000582370 PHF23Q9BUL5 403 aaPredicted RBP14.19□□□□□ -0.14
PDLIM1P3-201ENST00000582370 PPP6R1Q9UPN7 881 aa14.19□□□□□ -0.14
PDLIM1P3-201ENST00000582370 SCAF1Q9H7N4 1312 aaKnown RBP14.18□□□□□ -0.14
PDLIM1P3-201ENST00000582370 TOM1O60784 492 aa14.18□□□□□ -0.14
PDLIM1P3-201ENST00000582370 DNMT1P26358 1616 aaKnown RBP14.18□□□□□ -0.14
PDLIM1P3-201ENST00000582370 PTPRKQ15262 1439 aa14.16□□□□□ -0.14
PDLIM1P3-201ENST00000582370 NEURL4Q96JN8 1562 aa14.16□□□□□ -0.14
PDLIM1P3-201ENST00000582370 A2ML1A8K2U0 1454 aa14.15□□□□□ -0.14
PDLIM1P3-201ENST00000582370 PIP4K2BP78356 416 aa14.15□□□□□ -0.14
PDLIM1P3-201ENST00000582370 INO80Q9ULG1 1556 aaPredicted RBP14.14□□□□□ -0.15
PDLIM1P3-201ENST00000582370 SHANK2Q9UPX8 1470 aa14.14□□□□□ -0.15
PDLIM1P3-201ENST00000582370 ATP1B4Q9UN42 357 aaPredicted RBP14.14□□□□□ -0.15
PDLIM1P3-201ENST00000582370 ALKQ9UM73 1620 aa14.14□□□□□ -0.15
PDLIM1P3-201ENST00000582370 ATP7AQ04656 1500 aa14.14□□□□□ -0.15
PDLIM1P3-201ENST00000582370 ADGBQ8N7X0 1667 aa14.14□□□□□ -0.15
PDLIM1P3-201ENST00000582370 SYCP2Q9BX26 1530 aa14.12□□□□□ -0.15
PDLIM1P3-201ENST00000582370 ARHGAP35Q9NRY4 1499 aa14.12□□□□□ -0.15
PDLIM1P3-201ENST00000582370 VWDEQ8N2E2 1590 aa14.11□□□□□ -0.15
PDLIM1P3-201ENST00000582370 RNF17Q9BXT8 1623 aaKnown RBP14.1□□□□□ -0.15
PDLIM1P3-201ENST00000582370 A2MP01023 1474 aa14.1□□□□□ -0.15
PDLIM1P3-201ENST00000582370 CCDC18Q5T9S5 1454 aa14.1□□□□□ -0.15
PDLIM1P3-201ENST00000582370 SYNMO15061 1565 aa14.09□□□□□ -0.15
PDLIM1P3-201ENST00000582370 DEPDC5O75140 1603 aa14.08□□□□□ -0.15
PDLIM1P3-201ENST00000582370 SPAG9O60271 1321 aaKnown RBP14.07□□□□□ -0.16
PDLIM1P3-201ENST00000582370 IQGAP1P46940 1657 aa14.06□□□□□ -0.16
PDLIM1P3-201ENST00000582370 STRCP1A6NGW2 1772 aa14.05□□□□□ -0.16
PDLIM1P3-201ENST00000582370 PLEKHH2Q8IVE3 1493 aa14.05□□□□□ -0.16
PDLIM1P3-201ENST00000582370 FAM135AQ9P2D6 1515 aa14.05□□□□□ -0.16
PDLIM1P3-201ENST00000582370 MED14O60244 1454 aa14.04□□□□□ -0.16
PDLIM1P3-201ENST00000582370 KIAA1107Q9UPP5 1409 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms