RNA–Protein interactions for RNA: ENST00000571457.1

CHMP6-202, Transcript of charged multivesicular body protein 6, humanhuman

TSL 3

Gene CHMP6, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP6-202ENST00000571457 SCAPERQ9BY12 1400 aa19.08■□□□□ 0.65
CHMP6-202ENST00000571457 SIGLEC1Q9BZZ2 1709 aa19.08■□□□□ 0.65
CHMP6-202ENST00000571457 ATP10AO60312 1499 aa19.06■□□□□ 0.64
CHMP6-202ENST00000571457 PLCH2O75038 1416 aa19.06■□□□□ 0.64
CHMP6-202ENST00000571457 ARHGEF12Q9NZN5 1544 aa19.05■□□□□ 0.64
CHMP6-202ENST00000571457 PREX1Q8TCU6 1659 aa19.05■□□□□ 0.64
CHMP6-202ENST00000571457 C9orf84Q5VXU9 1444 aa19.04■□□□□ 0.64
CHMP6-202ENST00000571457 EFCAB2Q5VUJ9 269 aa19.03■□□□□ 0.64
CHMP6-202ENST00000571457 DISP3Q9P2K9 1392 aa19.03■□□□□ 0.64
CHMP6-202ENST00000571457 CDK13Q14004 1512 aaKnown RBP19■□□□□ 0.63
CHMP6-202ENST00000571457 SETD1BQ9UPS6 1966 aaKnown RBP18.99■□□□□ 0.63
CHMP6-202ENST00000571457 CEBPAP49715 358 aaPredicted RBP18.99■□□□□ 0.63
CHMP6-202ENST00000571457 CDK11AQ9UQ88 783 aaPredicted RBP18.99■□□□□ 0.63
CHMP6-202ENST00000571457 UHRF1BP1Q6BDS2 1440 aa18.99■□□□□ 0.63
CHMP6-202ENST00000571457 SOCS7O14512 581 aa18.98■□□□□ 0.63
CHMP6-202ENST00000571457 ZNF518AQ6AHZ1 1483 aa18.97■□□□□ 0.63
CHMP6-202ENST00000571457 MYO5CQ9NQX4 1742 aa18.96■□□□□ 0.63
CHMP6-202ENST00000571457 STRCQ7RTU9 1775 aa18.94■□□□□ 0.62
CHMP6-202ENST00000571457 ILDR2Q71H61 639 aa18.94■□□□□ 0.62
CHMP6-202ENST00000571457 MYT1LQ9UL68 1186 aa18.94■□□□□ 0.62
CHMP6-202ENST00000571457 ATP1B4Q9UN42 357 aaPredicted RBP18.94■□□□□ 0.62
CHMP6-202ENST00000571457 FMN1Q68DA7 1419 aa18.92■□□□□ 0.62
CHMP6-202ENST00000571457 PTPRTO14522 1441 aa18.91■□□□□ 0.62
CHMP6-202ENST00000571457 ESF1Q9H501 851 aaKnown RBP18.91■□□□□ 0.62
CHMP6-202ENST00000571457 KDM5CP41229 1560 aa18.9■□□□□ 0.62
CHMP6-202ENST00000571457 AFAP1Q8N556 730 aa18.9■□□□□ 0.62
CHMP6-202ENST00000571457 ARHGAP5Q13017 1502 aa18.9■□□□□ 0.62
CHMP6-202ENST00000571457 KIF14Q15058 1648 aa18.89■□□□□ 0.61
CHMP6-202ENST00000571457 CLIP1P30622 1438 aa18.88■□□□□ 0.61
CHMP6-202ENST00000571457 REREQ9P2R6 1566 aa18.88■□□□□ 0.61
CHMP6-202ENST00000571457 TROQ12816 1431 aaPredicted RBP18.86■□□□□ 0.61
CHMP6-202ENST00000571457 DIP2CQ9Y2E4 1556 aa18.85■□□□□ 0.61
CHMP6-202ENST00000571457 SPATA31D1Q6ZQQ2 1576 aa18.85■□□□□ 0.61
CHMP6-202ENST00000571457 MLH3Q9UHC1 1453 aa18.84■□□□□ 0.61
CHMP6-202ENST00000571457 TRAPPC8Q9Y2L5 1435 aa18.84■□□□□ 0.61
CHMP6-202ENST00000571457 IQSEC2Q5JU85 1478 aa18.84■□□□□ 0.61
CHMP6-202ENST00000571457 UBTFP17480 764 aaKnown RBP18.83■□□□□ 0.6
CHMP6-202ENST00000571457 AGLP35573 1532 aa18.83■□□□□ 0.6
CHMP6-202ENST00000571457 C3P01024 1663 aa18.82■□□□□ 0.6
CHMP6-202ENST00000571457 CNTLNQ9NXG0 1405 aa18.82■□□□□ 0.6
CHMP6-202ENST00000571457 ABCA6Q8N139 1617 aa18.8■□□□□ 0.6
CHMP6-202ENST00000571457 ARHGAP35Q9NRY4 1499 aa18.79■□□□□ 0.6
CHMP6-202ENST00000571457 LTBP4Q8N2S1 1624 aa18.79■□□□□ 0.6
CHMP6-202ENST00000571457 NCOA1Q15788 1441 aa18.78■□□□□ 0.6
CHMP6-202ENST00000571457 CDC42BPBQ9Y5S2 1711 aa18.76■□□□□ 0.59
CHMP6-202ENST00000571457 ABCC1P33527 1531 aa18.74■□□□□ 0.59
CHMP6-202ENST00000571457 PREX2Q70Z35 1606 aa18.74■□□□□ 0.59
CHMP6-202ENST00000571457 NPATQ14207 1427 aa18.74■□□□□ 0.59
CHMP6-202ENST00000571457 EHMT2Q96KQ7 1210 aa18.73■□□□□ 0.59
CHMP6-202ENST00000571457 ITSN2Q9NZM3 1697 aa18.71■□□□□ 0.59
CHMP6-202ENST00000571457 CAMSAP1Q5T5Y3 1602 aa18.71■□□□□ 0.58
CHMP6-202ENST00000571457 KIDINS220Q9ULH0 1771 aa18.7■□□□□ 0.58
CHMP6-202ENST00000571457 MROH2AA6NES4 1674 aa18.69■□□□□ 0.58
CHMP6-202ENST00000571457 CCDC18Q5T9S5 1454 aa18.69■□□□□ 0.58
CHMP6-202ENST00000571457 ZMYM3Q14202 1370 aa18.68■□□□□ 0.58
CHMP6-202ENST00000571457 UBAP1LF5GYI3 381 aa18.68■□□□□ 0.58
CHMP6-202ENST00000571457 LRRIQ1Q96JM4 1722 aa18.68■□□□□ 0.58
CHMP6-202ENST00000571457 PKD2Q13563 968 aa18.67■□□□□ 0.58
CHMP6-202ENST00000571457 NCKAP5LQ9HCH0 1330 aa18.66■□□□□ 0.58
CHMP6-202ENST00000571457 SPAG9O60271 1321 aaKnown RBP18.65■□□□□ 0.58
CHMP6-202ENST00000571457 ZNF335Q9H4Z2 1342 aaPredicted RBP18.65■□□□□ 0.58
CHMP6-202ENST00000571457 CASKIN1Q8WXD9 1431 aa18.65■□□□□ 0.58
CHMP6-202ENST00000571457 SAMD9LQ8IVG5 1584 aa18.64■□□□□ 0.58
CHMP6-202ENST00000571457 PLA2R1Q13018 1463 aa18.64■□□□□ 0.57
CHMP6-202ENST00000571457 ZNF777Q9ULD5 760 aaPredicted RBP18.63■□□□□ 0.57
CHMP6-202ENST00000571457 CDC42BPAQ5VT25 1732 aa18.63■□□□□ 0.57
CHMP6-202ENST00000571457 ZNF142P52746 1687 aaPredicted RBP18.6■□□□□ 0.57
CHMP6-202ENST00000571457 SUPT6HQ7KZ85 1726 aaKnown RBP18.59■□□□□ 0.57
CHMP6-202ENST00000571457 SYCP2Q9BX26 1530 aa18.59■□□□□ 0.57
CHMP6-202ENST00000571457 TCOF1Q13428 1488 aaKnown RBP18.58■□□□□ 0.57
CHMP6-202ENST00000571457 PPP6R1Q9UPN7 881 aa18.58■□□□□ 0.56
CHMP6-202ENST00000571457 MYO3AQ8NEV4 1616 aa18.58■□□□□ 0.56
CHMP6-202ENST00000571457 PLEKHH2Q8IVE3 1493 aa18.58■□□□□ 0.56
CHMP6-202ENST00000571457 CLTCQ00610 1675 aaKnown RBP18.57■□□□□ 0.56
CHMP6-202ENST00000571457 CEP170BQ9Y4F5 1589 aaPredicted RBP18.57■□□□□ 0.56
CHMP6-202ENST00000571457 HNRNPMP52272 730 aaKnown RBP eCLIP18.57■□□□□ 0.56
CHMP6-202ENST00000571457 ATP7AQ04656 1500 aa18.57■□□□□ 0.56
CHMP6-202ENST00000571457 PTPRKQ15262 1439 aa18.57■□□□□ 0.56
CHMP6-202ENST00000571457 KIAA1107Q9UPP5 1409 aa18.57■□□□□ 0.56
CHMP6-202ENST00000571457 GGT6Q6P531 493 aa18.56■□□□□ 0.56
CHMP6-202ENST00000571457 A2MP01023 1474 aa18.56■□□□□ 0.56
CHMP6-202ENST00000571457 GPATCH8Q9UKJ3 1502 aaKnown RBP18.55■□□□□ 0.56
CHMP6-202ENST00000571457 FYCO1Q9BQS8 1478 aa18.55■□□□□ 0.56
CHMP6-202ENST00000571457 PLXNC1O60486 1568 aa18.55■□□□□ 0.56
CHMP6-202ENST00000571457 CFDP1Q9UEE9 299 aaPredicted RBP18.54■□□□□ 0.56
CHMP6-202ENST00000571457 INO80Q9ULG1 1556 aaPredicted RBP18.52■□□□□ 0.56
CHMP6-202ENST00000571457 TOM1O60784 492 aa18.51■□□□□ 0.55
CHMP6-202ENST00000571457 CCNB3Q8WWL7 1395 aa18.5■□□□□ 0.55
CHMP6-202ENST00000571457 A2ML1A8K2U0 1454 aa18.5■□□□□ 0.55
CHMP6-202ENST00000571457 SCAF1Q9H7N4 1312 aaKnown RBP18.49■□□□□ 0.55
CHMP6-202ENST00000571457 ADGBQ8N7X0 1667 aa18.47■□□□□ 0.55
CHMP6-202ENST00000571457 HSPA1LP34931 641 aa18.47■□□□□ 0.55
CHMP6-202ENST00000571457 PIP4K2BP78356 416 aa18.47■□□□□ 0.55
CHMP6-202ENST00000571457 CPS1P31327 1500 aa18.47■□□□□ 0.55
CHMP6-202ENST00000571457 DNMT1P26358 1616 aaKnown RBP18.45■□□□□ 0.54
CHMP6-202ENST00000571457 MED1Q15648 1581 aaPredicted RBP18.44■□□□□ 0.54
CHMP6-202ENST00000571457 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
CHMP6-202ENST00000571457 SHANK2Q9UPX8 1470 aa18.43■□□□□ 0.54
CHMP6-202ENST00000571457 MTUS2Q5JR59 1369 aa18.42■□□□□ 0.54
CHMP6-202ENST00000571457 TNRQ92752 1358 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms