RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 FER1L4A9Z1Z3 1794 aa21.75■■□□□ 1.07
CCDC40-205ENST00000571028 DMRT2Q9Y5R5 561 aa21.74■■□□□ 1.07
CCDC40-205ENST00000571028 HECW1Q76N89 1606 aa21.73■■□□□ 1.07
CCDC40-205ENST00000571028 SCAPERQ9BY12 1400 aa21.72■■□□□ 1.07
CCDC40-205ENST00000571028 SOCS7O14512 581 aa21.71■■□□□ 1.07
CCDC40-205ENST00000571028 SIGLEC1Q9BZZ2 1709 aa21.7■■□□□ 1.06
CCDC40-205ENST00000571028 ILDR2Q71H61 639 aa21.69■■□□□ 1.06
CCDC40-205ENST00000571028 C9orf84Q5VXU9 1444 aa21.69■■□□□ 1.06
CCDC40-205ENST00000571028 ATP10AO60312 1499 aa21.69■■□□□ 1.06
CCDC40-205ENST00000571028 UBTFP17480 764 aaKnown RBP21.68■■□□□ 1.06
CCDC40-205ENST00000571028 PREX1Q8TCU6 1659 aa21.68■■□□□ 1.06
CCDC40-205ENST00000571028 ARHGEF12Q9NZN5 1544 aa21.67■■□□□ 1.06
CCDC40-205ENST00000571028 PLCH2O75038 1416 aa21.66■■□□□ 1.06
CCDC40-205ENST00000571028 CEBPAP49715 358 aaPredicted RBP21.66■■□□□ 1.06
CCDC40-205ENST00000571028 UHRF1BP1Q6BDS2 1440 aa21.65■■□□□ 1.06
CCDC40-205ENST00000571028 MYT1LQ9UL68 1186 aa21.64■■□□□ 1.05
CCDC40-205ENST00000571028 EFCAB2Q5VUJ9 269 aa21.63■■□□□ 1.05
CCDC40-205ENST00000571028 CDK13Q14004 1512 aaKnown RBP21.63■■□□□ 1.05
CCDC40-205ENST00000571028 ATP1B4Q9UN42 357 aaPredicted RBP21.61■■□□□ 1.05
CCDC40-205ENST00000571028 SPATA31D1Q6ZQQ2 1576 aa21.58■■□□□ 1.05
CCDC40-205ENST00000571028 ESF1Q9H501 851 aaKnown RBP21.58■■□□□ 1.05
CCDC40-205ENST00000571028 ZNF518AQ6AHZ1 1483 aa21.58■■□□□ 1.04
CCDC40-205ENST00000571028 CDK11AQ9UQ88 783 aaPredicted RBP21.57■■□□□ 1.04
CCDC40-205ENST00000571028 STRCQ7RTU9 1775 aa21.53■■□□□ 1.04
CCDC40-205ENST00000571028 PTPRTO14522 1441 aa21.53■■□□□ 1.04
CCDC40-205ENST00000571028 MYO5CQ9NQX4 1742 aa21.52■■□□□ 1.04
CCDC40-205ENST00000571028 ARHGAP5Q13017 1502 aa21.51■■□□□ 1.03
CCDC40-205ENST00000571028 LOC105371045A0A1W2PR82 267 aa21.51■■□□□ 1.03
CCDC40-205ENST00000571028 AFAP1Q8N556 730 aa21.51■■□□□ 1.03
CCDC40-205ENST00000571028 FMN1Q68DA7 1419 aa21.49■■□□□ 1.03
CCDC40-205ENST00000571028 KIF14Q15058 1648 aa21.48■■□□□ 1.03
CCDC40-205ENST00000571028 CLIP1P30622 1438 aa21.47■■□□□ 1.03
CCDC40-205ENST00000571028 KDM5CP41229 1560 aa21.47■■□□□ 1.03
CCDC40-205ENST00000571028 DIP2CQ9Y2E4 1556 aa21.44■■□□□ 1.02
CCDC40-205ENST00000571028 TRAPPC8Q9Y2L5 1435 aa21.44■■□□□ 1.02
CCDC40-205ENST00000571028 IQSEC2Q5JU85 1478 aa21.44■■□□□ 1.02
CCDC40-205ENST00000571028 TROQ12816 1431 aaPredicted RBP21.43■■□□□ 1.02
CCDC40-205ENST00000571028 REREQ9P2R6 1566 aa21.43■■□□□ 1.02
CCDC40-205ENST00000571028 SETD1BQ9UPS6 1966 aaKnown RBP21.41■■□□□ 1.02
CCDC40-205ENST00000571028 C3P01024 1663 aa21.41■■□□□ 1.02
CCDC40-205ENST00000571028 LTBP4Q8N2S1 1624 aa21.4■■□□□ 1.02
CCDC40-205ENST00000571028 MLH3Q9UHC1 1453 aa21.4■■□□□ 1.02
CCDC40-205ENST00000571028 NCOA1Q15788 1441 aa21.39■■□□□ 1.02
CCDC40-205ENST00000571028 CNTLNQ9NXG0 1405 aa21.39■■□□□ 1.02
CCDC40-205ENST00000571028 ABCA6Q8N139 1617 aa21.38■■□□□ 1.01
CCDC40-205ENST00000571028 AGLP35573 1532 aa21.38■■□□□ 1.01
CCDC40-205ENST00000571028 UBAP1LF5GYI3 381 aa21.35■■□□□ 1.01
CCDC40-205ENST00000571028 CAMSAP1Q5T5Y3 1602 aa21.32■■□□□ 1
CCDC40-205ENST00000571028 ARHGAP35Q9NRY4 1499 aa21.32■■□□□ 1
CCDC40-205ENST00000571028 NPATQ14207 1427 aa21.31■■□□□ 1
CCDC40-205ENST00000571028 ABCC1P33527 1531 aa21.31■■□□□ 1
CCDC40-205ENST00000571028 ZNF335Q9H4Z2 1342 aaPredicted RBP21.29■■□□□ 1
CCDC40-205ENST00000571028 NCKAP5LQ9HCH0 1330 aa21.29■■□□□ 1
CCDC40-205ENST00000571028 PREX2Q70Z35 1606 aa21.27■■□□□ 1
CCDC40-205ENST00000571028 CDC42BPBQ9Y5S2 1711 aa21.26■□□□□ 0.99
CCDC40-205ENST00000571028 ZMYM3Q14202 1370 aa21.26■□□□□ 0.99
CCDC40-205ENST00000571028 ITSN2Q9NZM3 1697 aa21.25■□□□□ 0.99
CCDC40-205ENST00000571028 PKD2Q13563 968 aa21.25■□□□□ 0.99
CCDC40-205ENST00000571028 ZNF777Q9ULD5 760 aaPredicted RBP21.24■□□□□ 0.99
CCDC40-205ENST00000571028 CCDC18Q5T9S5 1454 aa21.23■□□□□ 0.99
CCDC40-205ENST00000571028 KIDINS220Q9ULH0 1771 aa21.23■□□□□ 0.99
CCDC40-205ENST00000571028 MROH2AA6NES4 1674 aa21.22■□□□□ 0.99
CCDC40-205ENST00000571028 SPAG9O60271 1321 aaKnown RBP21.22■□□□□ 0.99
CCDC40-205ENST00000571028 SCAF1Q9H7N4 1312 aaKnown RBP21.22■□□□□ 0.99
CCDC40-205ENST00000571028 CEP162Q5TB80 1403 aa21.21■□□□□ 0.99
CCDC40-205ENST00000571028 PLA2R1Q13018 1463 aa21.2■□□□□ 0.98
CCDC40-205ENST00000571028 SAMD9LQ8IVG5 1584 aa21.19■□□□□ 0.98
CCDC40-205ENST00000571028 PPP6R1Q9UPN7 881 aa21.18■□□□□ 0.98
CCDC40-205ENST00000571028 LRRIQ1Q96JM4 1722 aa21.16■□□□□ 0.98
CCDC40-205ENST00000571028 MYO3AQ8NEV4 1616 aa21.16■□□□□ 0.98
CCDC40-205ENST00000571028 CEP170BQ9Y4F5 1589 aaPredicted RBP21.15■□□□□ 0.98
CCDC40-205ENST00000571028 CASKIN1Q8WXD9 1431 aa21.15■□□□□ 0.98
CCDC40-205ENST00000571028 SYCP2Q9BX26 1530 aa21.14■□□□□ 0.98
CCDC40-205ENST00000571028 PIP4K2BP78356 416 aa21.14■□□□□ 0.97
CCDC40-205ENST00000571028 GGT6Q6P531 493 aa21.14■□□□□ 0.97
CCDC40-205ENST00000571028 ZNF142P52746 1687 aaPredicted RBP21.14■□□□□ 0.97
CCDC40-205ENST00000571028 TCOF1Q13428 1488 aaKnown RBP21.13■□□□□ 0.97
CCDC40-205ENST00000571028 SUPT6HQ7KZ85 1726 aaKnown RBP21.13■□□□□ 0.97
CCDC40-205ENST00000571028 CLTCQ00610 1675 aaKnown RBP21.13■□□□□ 0.97
CCDC40-205ENST00000571028 HNRNPMP52272 730 aaKnown RBP eCLIP21.13■□□□□ 0.97
CCDC40-205ENST00000571028 PTPRKQ15262 1439 aa21.12■□□□□ 0.97
CCDC40-205ENST00000571028 A2MP01023 1474 aa21.12■□□□□ 0.97
CCDC40-205ENST00000571028 CDC42BPAQ5VT25 1732 aa21.12■□□□□ 0.97
CCDC40-205ENST00000571028 ATP7AQ04656 1500 aa21.11■□□□□ 0.97
CCDC40-205ENST00000571028 TOM1O60784 492 aa21.1■□□□□ 0.97
CCDC40-205ENST00000571028 HSPA1LP34931 641 aa21.1■□□□□ 0.97
CCDC40-205ENST00000571028 PLEKHH2Q8IVE3 1493 aa21.08■□□□□ 0.97
CCDC40-205ENST00000571028 MED1Q15648 1581 aaPredicted RBP21.08■□□□□ 0.97
CCDC40-205ENST00000571028 PHF23Q9BUL5 403 aaPredicted RBP21.08■□□□□ 0.97
CCDC40-205ENST00000571028 CFDP1Q9UEE9 299 aaPredicted RBP21.08■□□□□ 0.97
CCDC40-205ENST00000571028 PLXNC1O60486 1568 aa21.07■□□□□ 0.96
CCDC40-205ENST00000571028 GPATCH8Q9UKJ3 1502 aaKnown RBP21.06■□□□□ 0.96
CCDC40-205ENST00000571028 KIAA1107Q9UPP5 1409 aa21.05■□□□□ 0.96
CCDC40-205ENST00000571028 A2ML1A8K2U0 1454 aa21.05■□□□□ 0.96
CCDC40-205ENST00000571028 FYCO1Q9BQS8 1478 aa21.05■□□□□ 0.96
CCDC40-205ENST00000571028 INO80Q9ULG1 1556 aaPredicted RBP21.04■□□□□ 0.96
CCDC40-205ENST00000571028 CPS1P31327 1500 aa21.04■□□□□ 0.96
CCDC40-205ENST00000571028 CCNB3Q8WWL7 1395 aa21.03■□□□□ 0.96
CCDC40-205ENST00000571028 DNMT1P26358 1616 aaKnown RBP20.99■□□□□ 0.95
CCDC40-205ENST00000571028 SHANK2Q9UPX8 1470 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms