RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SPATA31D1Q6ZQQ2 1576 aa18.73■□□□□ 0.59
VPS53-207ENST00000570510 SCAPERQ9BY12 1400 aa18.73■□□□□ 0.59
VPS53-207ENST00000570510 UHRF1BP1Q6BDS2 1440 aa18.72■□□□□ 0.59
VPS53-207ENST00000570510 SAMD9Q5K651 1589 aa18.72■□□□□ 0.59
VPS53-207ENST00000570510 ESF1Q9H501 851 aaKnown RBP18.71■□□□□ 0.59
VPS53-207ENST00000570510 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.7■□□□□ 0.58
VPS53-207ENST00000570510 PREX1Q8TCU6 1659 aa18.7■□□□□ 0.58
VPS53-207ENST00000570510 HECW1Q76N89 1606 aa18.7■□□□□ 0.58
VPS53-207ENST00000570510 ATP10AO60312 1499 aa18.7■□□□□ 0.58
VPS53-207ENST00000570510 CSRNP3Q8WYN3 585 aa18.69■□□□□ 0.58
VPS53-207ENST00000570510 C9orf84Q5VXU9 1444 aa18.68■□□□□ 0.58
VPS53-207ENST00000570510 EFCAB2Q5VUJ9 269 aa18.66■□□□□ 0.58
VPS53-207ENST00000570510 ATP1B4Q9UN42 357 aaPredicted RBP18.66■□□□□ 0.58
VPS53-207ENST00000570510 SIGLEC1Q9BZZ2 1709 aa18.66■□□□□ 0.58
VPS53-207ENST00000570510 ARHGEF12Q9NZN5 1544 aa18.65■□□□□ 0.58
VPS53-207ENST00000570510 PLCH2O75038 1416 aa18.63■□□□□ 0.57
VPS53-207ENST00000570510 PTPRTO14522 1441 aa18.62■□□□□ 0.57
VPS53-207ENST00000570510 STRCQ7RTU9 1775 aa18.61■□□□□ 0.57
VPS53-207ENST00000570510 CDK11AQ9UQ88 783 aaPredicted RBP18.6■□□□□ 0.57
VPS53-207ENST00000570510 AFAP1Q8N556 730 aa18.57■□□□□ 0.56
VPS53-207ENST00000570510 SETD1BQ9UPS6 1966 aaKnown RBP18.57■□□□□ 0.56
VPS53-207ENST00000570510 UBAP1LF5GYI3 381 aa18.56■□□□□ 0.56
VPS53-207ENST00000570510 ZNF518AQ6AHZ1 1483 aa18.56■□□□□ 0.56
VPS53-207ENST00000570510 IQSEC2Q5JU85 1478 aa18.54■□□□□ 0.56
VPS53-207ENST00000570510 CDK13Q14004 1512 aaKnown RBP18.54■□□□□ 0.56
VPS53-207ENST00000570510 TRAPPC8Q9Y2L5 1435 aa18.52■□□□□ 0.56
VPS53-207ENST00000570510 ARHGAP5Q13017 1502 aa18.49■□□□□ 0.55
VPS53-207ENST00000570510 LTBP4Q8N2S1 1624 aa18.49■□□□□ 0.55
VPS53-207ENST00000570510 MYO5CQ9NQX4 1742 aa18.48■□□□□ 0.55
VPS53-207ENST00000570510 SCAF1Q9H7N4 1312 aaKnown RBP18.48■□□□□ 0.55
VPS53-207ENST00000570510 NCOA1Q15788 1441 aa18.47■□□□□ 0.55
VPS53-207ENST00000570510 NCKAP5LQ9HCH0 1330 aa18.45■□□□□ 0.54
VPS53-207ENST00000570510 C3P01024 1663 aa18.44■□□□□ 0.54
VPS53-207ENST00000570510 CLIP1P30622 1438 aa18.44■□□□□ 0.54
VPS53-207ENST00000570510 EEA1Q15075 1411 aa18.44■□□□□ 0.54
VPS53-207ENST00000570510 CNTLNQ9NXG0 1405 aa18.44■□□□□ 0.54
VPS53-207ENST00000570510 ZNF335Q9H4Z2 1342 aaPredicted RBP18.44■□□□□ 0.54
VPS53-207ENST00000570510 DIP2CQ9Y2E4 1556 aa18.42■□□□□ 0.54
VPS53-207ENST00000570510 KDM5CP41229 1560 aa18.42■□□□□ 0.54
VPS53-207ENST00000570510 KIF14Q15058 1648 aa18.41■□□□□ 0.54
VPS53-207ENST00000570510 FMN1Q68DA7 1419 aa18.41■□□□□ 0.54
VPS53-207ENST00000570510 CAMSAP1Q5T5Y3 1602 aa18.41■□□□□ 0.54
VPS53-207ENST00000570510 UBTFP17480 764 aaKnown RBP18.4■□□□□ 0.54
VPS53-207ENST00000570510 PKD2Q13563 968 aa18.4■□□□□ 0.54
VPS53-207ENST00000570510 EHMT2Q96KQ7 1210 aa18.4■□□□□ 0.54
VPS53-207ENST00000570510 MLH3Q9UHC1 1453 aa18.39■□□□□ 0.54
VPS53-207ENST00000570510 REREQ9P2R6 1566 aa18.39■□□□□ 0.53
VPS53-207ENST00000570510 PIP4K2BP78356 416 aa18.39■□□□□ 0.53
VPS53-207ENST00000570510 AGLP35573 1532 aa18.39■□□□□ 0.53
VPS53-207ENST00000570510 PHF23Q9BUL5 403 aaPredicted RBP18.38■□□□□ 0.53
VPS53-207ENST00000570510 TROQ12816 1431 aaPredicted RBP18.38■□□□□ 0.53
VPS53-207ENST00000570510 ZMYM3Q14202 1370 aa18.36■□□□□ 0.53
VPS53-207ENST00000570510 NPATQ14207 1427 aa18.36■□□□□ 0.53
VPS53-207ENST00000570510 ABCA6Q8N139 1617 aa18.36■□□□□ 0.53
VPS53-207ENST00000570510 TOM1O60784 492 aa18.35■□□□□ 0.53
VPS53-207ENST00000570510 HSPA1LP34931 641 aa18.34■□□□□ 0.53
VPS53-207ENST00000570510 PPP6R1Q9UPN7 881 aa18.34■□□□□ 0.53
VPS53-207ENST00000570510 ZNF777Q9ULD5 760 aaPredicted RBP18.33■□□□□ 0.52
VPS53-207ENST00000570510 SPAG9O60271 1321 aaKnown RBP18.28■□□□□ 0.52
VPS53-207ENST00000570510 GGT6Q6P531 493 aa18.28■□□□□ 0.52
VPS53-207ENST00000570510 PLA2R1Q13018 1463 aa18.27■□□□□ 0.52
VPS53-207ENST00000570510 ABCC1P33527 1531 aa18.27■□□□□ 0.51
VPS53-207ENST00000570510 MED1Q15648 1581 aaPredicted RBP18.26■□□□□ 0.51
VPS53-207ENST00000570510 CDC42BPBQ9Y5S2 1711 aa18.25■□□□□ 0.51
VPS53-207ENST00000570510 MROH2AA6NES4 1674 aa18.25■□□□□ 0.51
VPS53-207ENST00000570510 CHIC1Q5VXU3 224 aa18.24■□□□□ 0.51
VPS53-207ENST00000570510 SUPT6HQ7KZ85 1726 aaKnown RBP18.23■□□□□ 0.51
VPS53-207ENST00000570510 KIDINS220Q9ULH0 1771 aa18.23■□□□□ 0.51
VPS53-207ENST00000570510 ITSN2Q9NZM3 1697 aa18.22■□□□□ 0.51
VPS53-207ENST00000570510 TCOF1Q13428 1488 aaKnown RBP18.22■□□□□ 0.51
VPS53-207ENST00000570510 ARHGAP35Q9NRY4 1499 aa18.22■□□□□ 0.51
VPS53-207ENST00000570510 HNRNPMP52272 730 aaKnown RBP eCLIP18.22■□□□□ 0.51
VPS53-207ENST00000570510 PREX2Q70Z35 1606 aa18.22■□□□□ 0.51
VPS53-207ENST00000570510 CEP170BQ9Y4F5 1589 aaPredicted RBP18.21■□□□□ 0.51
VPS53-207ENST00000570510 SENP3Q9H4L4 574 aaPredicted RBP18.21■□□□□ 0.51
VPS53-207ENST00000570510 MYO3AQ8NEV4 1616 aa18.2■□□□□ 0.5
VPS53-207ENST00000570510 PTPRKQ15262 1439 aa18.19■□□□□ 0.5
VPS53-207ENST00000570510 CLTCQ00610 1675 aaKnown RBP18.18■□□□□ 0.5
VPS53-207ENST00000570510 SAMD9LQ8IVG5 1584 aa18.18■□□□□ 0.5
VPS53-207ENST00000570510 ZNF142P52746 1687 aaPredicted RBP18.17■□□□□ 0.5
VPS53-207ENST00000570510 CPS1P31327 1500 aa18.17■□□□□ 0.5
VPS53-207ENST00000570510 CCDC18Q5T9S5 1454 aa18.16■□□□□ 0.5
VPS53-207ENST00000570510 A2MP01023 1474 aa18.15■□□□□ 0.5
VPS53-207ENST00000570510 ANKLE2Q86XL3 938 aa18.15■□□□□ 0.5
VPS53-207ENST00000570510 A2ML1A8K2U0 1454 aa18.14■□□□□ 0.5
VPS53-207ENST00000570510 SHANK2Q9UPX8 1470 aa18.14■□□□□ 0.5
VPS53-207ENST00000570510 CFDP1Q9UEE9 299 aaPredicted RBP18.14■□□□□ 0.49
VPS53-207ENST00000570510 SYCP2Q9BX26 1530 aa18.13■□□□□ 0.49
VPS53-207ENST00000570510 ATP7AQ04656 1500 aa18.13■□□□□ 0.49
VPS53-207ENST00000570510 THEMISQ8N1K5 641 aaPredicted RBP18.1■□□□□ 0.49
VPS53-207ENST00000570510 CDC42BPAQ5VT25 1732 aa18.09■□□□□ 0.49
VPS53-207ENST00000570510 PLEKHH2Q8IVE3 1493 aa18.09■□□□□ 0.49
VPS53-207ENST00000570510 CASKIN1Q8WXD9 1431 aa18.09■□□□□ 0.49
VPS53-207ENST00000570510 LRRIQ1Q96JM4 1722 aa18.09■□□□□ 0.49
VPS53-207ENST00000570510 DNMT1P26358 1616 aaKnown RBP18.09■□□□□ 0.49
VPS53-207ENST00000570510 TNRQ92752 1358 aa18.08■□□□□ 0.49
VPS53-207ENST00000570510 KIAA1107Q9UPP5 1409 aa18.07■□□□□ 0.48
VPS53-207ENST00000570510 CCNB3Q8WWL7 1395 aa18.07■□□□□ 0.48
VPS53-207ENST00000570510 FBXO31Q5XUX0 539 aaPredicted RBP18.07■□□□□ 0.48
VPS53-207ENST00000570510 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms