RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 DNAJC5BQ9UF47 199 aa19.47■□□□□ 0.71
VPS35-210ENST00000568784 GAPVD1Q14C86 1478 aa19.46■□□□□ 0.71
VPS35-210ENST00000568784 NUDCQ9Y266 331 aa19.46■□□□□ 0.71
VPS35-210ENST00000568784 RGL3Q3MIN7 710 aa19.46■□□□□ 0.71
VPS35-210ENST00000568784 ABCA10Q8WWZ4 1543 aa19.45■□□□□ 0.7
VPS35-210ENST00000568784 LAS1LQ9Y4W2 734 aaKnown RBP19.44■□□□□ 0.7
VPS35-210ENST00000568784 SNAPC4Q5SXM2 1469 aa19.41■□□□□ 0.7
VPS35-210ENST00000568784 DCAF11Q8TEB1 546 aa19.41■□□□□ 0.7
VPS35-210ENST00000568784 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.4■□□□□ 0.7
VPS35-210ENST00000568784 CDK13Q14004 1512 aaKnown RBP19.4■□□□□ 0.7
VPS35-210ENST00000568784 DNMBPQ6XZF7 1577 aa19.39■□□□□ 0.69
VPS35-210ENST00000568784 USP47Q96K76 1375 aa19.38■□□□□ 0.69
VPS35-210ENST00000568784 CC2D2AQ9P2K1 1620 aa19.37■□□□□ 0.69
VPS35-210ENST00000568784 RTN4Q9NQC3 1192 aaKnown RBP19.37■□□□□ 0.69
VPS35-210ENST00000568784 ST20-MTHFSA0A0A6YYL1 179 aa19.36■□□□□ 0.69
VPS35-210ENST00000568784 SUPT6HQ7KZ85 1726 aaKnown RBP19.36■□□□□ 0.69
VPS35-210ENST00000568784 CC2D1BQ5T0F9 858 aaKnown RBP19.35■□□□□ 0.69
VPS35-210ENST00000568784 NCOA1Q15788 1441 aa19.35■□□□□ 0.69
VPS35-210ENST00000568784 EHBP1L1Q8N3D4 1523 aa19.35■□□□□ 0.69
VPS35-210ENST00000568784 EXOC6Q8TAG9 804 aa19.35■□□□□ 0.69
VPS35-210ENST00000568784 MYT1LQ9UL68 1186 aa19.35■□□□□ 0.69
VPS35-210ENST00000568784 DAXXQ9UER7 740 aaPredicted RBP19.35■□□□□ 0.69
VPS35-210ENST00000568784 IPO9Q96P70 1041 aaKnown RBP19.34■□□□□ 0.69
VPS35-210ENST00000568784 TSPY4P0CV99 314 aa19.33■□□□□ 0.68
VPS35-210ENST00000568784 TSPY10P0CW01 314 aa19.33■□□□□ 0.68
VPS35-210ENST00000568784 PDS5BQ9NTI5 1447 aa19.32■□□□□ 0.68
VPS35-210ENST00000568784 ANKRD30BQ9BXX2 1392 aa19.32■□□□□ 0.68
VPS35-210ENST00000568784 GRIN2BQ13224 1484 aa19.32■□□□□ 0.68
VPS35-210ENST00000568784 PLIN1O60240 522 aa19.31■□□□□ 0.68
VPS35-210ENST00000568784 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
VPS35-210ENST00000568784 NUP155O75694 1391 aa19.3■□□□□ 0.68
VPS35-210ENST00000568784 RCAN3Q9UKA8 241 aa19.29■□□□□ 0.68
VPS35-210ENST00000568784 URB2Q14146 1524 aaKnown RBP19.28■□□□□ 0.68
VPS35-210ENST00000568784 EPRSP07814 1512 aaKnown RBP19.28■□□□□ 0.68
VPS35-210ENST00000568784 KDM6BO15054 1643 aa19.27■□□□□ 0.68
VPS35-210ENST00000568784 NEFMP07197 916 aa19.27■□□□□ 0.67
VPS35-210ENST00000568784 SKAP1Q86WV1 359 aa19.27■□□□□ 0.67
VPS35-210ENST00000568784 MAGI3Q5TCQ9 1506 aa19.26■□□□□ 0.67
VPS35-210ENST00000568784 PNISRQ8TF01 805 aaKnown RBP19.26■□□□□ 0.67
VPS35-210ENST00000568784 CUL7Q14999 1698 aa19.26■□□□□ 0.67
VPS35-210ENST00000568784 UGGT2Q9NYU1 1516 aa19.25■□□□□ 0.67
VPS35-210ENST00000568784 DAPK1P53355 1430 aa19.24■□□□□ 0.67
VPS35-210ENST00000568784 CTTNBP2Q8WZ74 1663 aa19.24■□□□□ 0.67
VPS35-210ENST00000568784 PLEKHD1A6NEE1 506 aa19.24■□□□□ 0.67
VPS35-210ENST00000568784 CDCA7LQ96GN5 454 aa19.23■□□□□ 0.67
VPS35-210ENST00000568784 RRP1P56182 461 aaKnown RBP19.22■□□□□ 0.67
VPS35-210ENST00000568784 KDM5BQ9UGL1 1544 aa19.22■□□□□ 0.67
VPS35-210ENST00000568784 RPRD2Q5VT52 1461 aaKnown RBP19.22■□□□□ 0.67
VPS35-210ENST00000568784 HNRNPMP52272 730 aaKnown RBP eCLIP19.22■□□□□ 0.676e-6■■■■□ 20.3
VPS35-210ENST00000568784 ABCC5O15440 1437 aa19.21■□□□□ 0.67
VPS35-210ENST00000568784 SMG6Q86US8 1419 aaKnown RBP19.21■□□□□ 0.67
VPS35-210ENST00000568784 DENND4BO75064 1496 aaPredicted RBP19.2■□□□□ 0.66
VPS35-210ENST00000568784 PRDM2Q13029 1718 aa19.2■□□□□ 0.66
VPS35-210ENST00000568784 THOC2Q8NI27 1593 aaKnown RBP19.19■□□□□ 0.66
VPS35-210ENST00000568784 MIA2Q96PC5 1412 aa19.19■□□□□ 0.66
VPS35-210ENST00000568784 PRG4Q92954 1404 aaPredicted RBP19.19■□□□□ 0.66
VPS35-210ENST00000568784 ROCK2O75116 1388 aaKnown RBP19.19■□□□□ 0.66
VPS35-210ENST00000568784 PDE4AP27815 886 aa19.18■□□□□ 0.66
VPS35-210ENST00000568784 SLC4A3P48751 1232 aa19.17■□□□□ 0.66
VPS35-210ENST00000568784 MYBBP1AQ9BQG0 1328 aaKnown RBP19.17■□□□□ 0.66
VPS35-210ENST00000568784 ANKRD30AQ9BXX3 1397 aa19.17■□□□□ 0.66
VPS35-210ENST00000568784 KIF15Q9NS87 1388 aa19.16■□□□□ 0.66
VPS35-210ENST00000568784 HECW1Q76N89 1606 aa19.14■□□□□ 0.66
VPS35-210ENST00000568784 RALBP1Q15311 655 aa19.14■□□□□ 0.65
VPS35-210ENST00000568784 RGS3P49796 1198 aa19.14■□□□□ 0.65
VPS35-210ENST00000568784 NLRP13Q86W25 1043 aa19.13■□□□□ 0.65
VPS35-210ENST00000568784 DHX29Q7Z478 1369 aaKnown RBP19.12■□□□□ 0.65
VPS35-210ENST00000568784 KTN1Q86UP2 1357 aaKnown RBP19.12■□□□□ 0.65
VPS35-210ENST00000568784 NBPF1Q3BBV0 1214 aa19.12■□□□□ 0.65
VPS35-210ENST00000568784 TCERG1O14776 1098 aaKnown RBP19.12■□□□□ 0.65
VPS35-210ENST00000568784 CRBNQ96SW2 442 aa19.11■□□□□ 0.65
VPS35-210ENST00000568784 WDR43Q15061 677 aaKnown RBP eCLIP19.11■□□□□ 0.65
VPS35-210ENST00000568784 TCOF1Q13428 1488 aaKnown RBP19.1■□□□□ 0.65
VPS35-210ENST00000568784 ANKRD50Q9ULJ7 1429 aa19.09■□□□□ 0.65
VPS35-210ENST00000568784 KIAA1107Q9UPP5 1409 aa19.09■□□□□ 0.65
VPS35-210ENST00000568784 TEX14Q8IWB6 1497 aa19.09■□□□□ 0.65
VPS35-210ENST00000568784 SAMD9Q5K651 1589 aa19.08■□□□□ 0.65
VPS35-210ENST00000568784 IL27Q8NEV9 243 aa19.08■□□□□ 0.65
VPS35-210ENST00000568784 PANK3Q9H999 370 aa19.08■□□□□ 0.64
VPS35-210ENST00000568784 ROCK1Q13464 1354 aa19.08■□□□□ 0.64
VPS35-210ENST00000568784 IQGAP2Q13576 1575 aa19.07■□□□□ 0.64
VPS35-210ENST00000568784 SPATA31E1Q6ZUB1 1445 aa19.07■□□□□ 0.64
VPS35-210ENST00000568784 LRRIQ1Q96JM4 1722 aa19.06■□□□□ 0.64
VPS35-210ENST00000568784 LAMC3Q9Y6N6 1575 aa19.06■□□□□ 0.64
VPS35-210ENST00000568784 JPH4Q96JJ6 628 aa19.04■□□□□ 0.64
VPS35-210ENST00000568784 CANXP27824 592 aaKnown RBP19.03■□□□□ 0.64
VPS35-210ENST00000568784 KNSTRNQ9Y448 316 aa19.03■□□□□ 0.64
VPS35-210ENST00000568784 BRD4O60885 1362 aaPredicted RBP19.02■□□□□ 0.63
VPS35-210ENST00000568784 CCDC146Q8IYE0 955 aa19.01■□□□□ 0.63
VPS35-210ENST00000568784 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.01■□□□□ 0.63
VPS35-210ENST00000568784 ARXQ96QS3 562 aa19.01■□□□□ 0.63
VPS35-210ENST00000568784 PPM1GO15355 546 aaPredicted RBP19■□□□□ 0.63
VPS35-210ENST00000568784 PLB1Q6P1J6 1458 aa19■□□□□ 0.63
VPS35-210ENST00000568784 C20orf194Q5TEA3 1177 aa19■□□□□ 0.63
VPS35-210ENST00000568784 BACH2Q9BYV9 841 aa19■□□□□ 0.63
VPS35-210ENST00000568784 CAMSAP2Q08AD1 1489 aa18.99■□□□□ 0.63
VPS35-210ENST00000568784 GCC2Q8IWJ2 1684 aa18.99■□□□□ 0.63
VPS35-210ENST00000568784 PZPP20742 1482 aa18.99■□□□□ 0.63
VPS35-210ENST00000568784 TMF1P82094 1093 aa18.99■□□□□ 0.63
VPS35-210ENST00000568784 NEUROD2Q15784 382 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms