RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 HNRNPUL2Q1KMD3 747 aaKnown RBP20.75■□□□□ 0.91
SMAD3-206ENST00000558739 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.73■□□□□ 0.91
SMAD3-206ENST00000558739 LTBP4Q8N2S1 1624 aa20.73■□□□□ 0.91
SMAD3-206ENST00000558739 MAGI2Q86UL8 1455 aa20.68■□□□□ 0.9
SMAD3-206ENST00000558739 UHRF1BP1Q6BDS2 1440 aa20.67■□□□□ 0.9
SMAD3-206ENST00000558739 DMRT2Q9Y5R5 561 aa20.64■□□□□ 0.89
SMAD3-206ENST00000558739 PTPRTO14522 1441 aa20.63■□□□□ 0.89
SMAD3-206ENST00000558739 C9orf84Q5VXU9 1444 aa20.63■□□□□ 0.89
SMAD3-206ENST00000558739 ATP10AO60312 1499 aa20.62■□□□□ 0.89
SMAD3-206ENST00000558739 SCAPERQ9BY12 1400 aa20.61■□□□□ 0.89
SMAD3-206ENST00000558739 SETD1BQ9UPS6 1966 aaKnown RBP20.61■□□□□ 0.89
SMAD3-206ENST00000558739 C3P01024 1663 aa20.59■□□□□ 0.89
SMAD3-206ENST00000558739 FAM9AQ8IZU1 332 aaPredicted RBP20.59■□□□□ 0.89
SMAD3-206ENST00000558739 IQSEC2Q5JU85 1478 aa20.57■□□□□ 0.88
SMAD3-206ENST00000558739 PLEKHD1A6NEE1 506 aa20.56■□□□□ 0.88
SMAD3-206ENST00000558739 CDK13Q14004 1512 aaKnown RBP20.55■□□□□ 0.88
SMAD3-206ENST00000558739 RANGAP1P46060 587 aaPredicted RBP20.54■□□□□ 0.88
SMAD3-206ENST00000558739 NCOA1Q15788 1441 aa20.53■□□□□ 0.88
SMAD3-206ENST00000558739 PLCH2O75038 1416 aa20.51■□□□□ 0.87
SMAD3-206ENST00000558739 DIP2CQ9Y2E4 1556 aa20.51■□□□□ 0.87
SMAD3-206ENST00000558739 KDM5CP41229 1560 aa20.48■□□□□ 0.87
SMAD3-206ENST00000558739 MED1Q15648 1581 aaPredicted RBP20.48■□□□□ 0.87
SMAD3-206ENST00000558739 ABCA6Q8N139 1617 aa20.48■□□□□ 0.87
SMAD3-206ENST00000558739 MYO5CQ9NQX4 1742 aa20.47■□□□□ 0.87
SMAD3-206ENST00000558739 ZNF335Q9H4Z2 1342 aaPredicted RBP20.47■□□□□ 0.87
SMAD3-206ENST00000558739 UBAP1LF5GYI3 381 aa20.46■□□□□ 0.87
SMAD3-206ENST00000558739 CAMSAP1Q5T5Y3 1602 aa20.45■□□□□ 0.87
SMAD3-206ENST00000558739 KIF14Q15058 1648 aa20.44■□□□□ 0.86
SMAD3-206ENST00000558739 ZNF518AQ6AHZ1 1483 aa20.43■□□□□ 0.86
SMAD3-206ENST00000558739 TRAPPC8Q9Y2L5 1435 aa20.43■□□□□ 0.86
SMAD3-206ENST00000558739 AFAP1Q8N556 730 aa20.42■□□□□ 0.86
SMAD3-206ENST00000558739 REREQ9P2R6 1566 aa20.42■□□□□ 0.86
SMAD3-206ENST00000558739 NCKAP5LQ9HCH0 1330 aa20.38■□□□□ 0.85
SMAD3-206ENST00000558739 EFCAB2Q5VUJ9 269 aa20.36■□□□□ 0.85
SMAD3-206ENST00000558739 ARHGAP5Q13017 1502 aa20.36■□□□□ 0.85
SMAD3-206ENST00000558739 HSPA1LP34931 641 aa20.35■□□□□ 0.85
SMAD3-206ENST00000558739 AGLP35573 1532 aa20.34■□□□□ 0.85
SMAD3-206ENST00000558739 MYT1LQ9UL68 1186 aa20.33■□□□□ 0.85
SMAD3-206ENST00000558739 MYO3AQ8NEV4 1616 aa20.31■□□□□ 0.84
SMAD3-206ENST00000558739 ZNF142P52746 1687 aaPredicted RBP20.3■□□□□ 0.84
SMAD3-206ENST00000558739 MLH3Q9UHC1 1453 aa20.3■□□□□ 0.84
SMAD3-206ENST00000558739 SCAF1Q9H7N4 1312 aaKnown RBP20.29■□□□□ 0.84
SMAD3-206ENST00000558739 CSRNP3Q8WYN3 585 aa20.29■□□□□ 0.84
SMAD3-206ENST00000558739 CDC42BPBQ9Y5S2 1711 aa20.29■□□□□ 0.84
SMAD3-206ENST00000558739 KIDINS220Q9ULH0 1771 aa20.29■□□□□ 0.84
SMAD3-206ENST00000558739 SUPT6HQ7KZ85 1726 aaKnown RBP20.28■□□□□ 0.84
SMAD3-206ENST00000558739 ESF1Q9H501 851 aaKnown RBP20.28■□□□□ 0.84
SMAD3-206ENST00000558739 MROH2AA6NES4 1674 aa20.28■□□□□ 0.84
SMAD3-206ENST00000558739 NPATQ14207 1427 aa20.27■□□□□ 0.84
SMAD3-206ENST00000558739 TCOF1Q13428 1488 aaKnown RBP20.27■□□□□ 0.84
SMAD3-206ENST00000558739 PIP4K2BP78356 416 aa20.27■□□□□ 0.84
SMAD3-206ENST00000558739 CNTLNQ9NXG0 1405 aa20.27■□□□□ 0.83
SMAD3-206ENST00000558739 ITSN2Q9NZM3 1697 aa20.26■□□□□ 0.83
SMAD3-206ENST00000558739 ABCC1P33527 1531 aa20.26■□□□□ 0.83
SMAD3-206ENST00000558739 CEP170BQ9Y4F5 1589 aaPredicted RBP20.25■□□□□ 0.83
SMAD3-206ENST00000558739 LRRIQ1Q96JM4 1722 aa20.24■□□□□ 0.83
SMAD3-206ENST00000558739 PLA2R1Q13018 1463 aa20.24■□□□□ 0.83
SMAD3-206ENST00000558739 CLTCQ00610 1675 aaKnown RBP20.22■□□□□ 0.83
SMAD3-206ENST00000558739 PREX2Q70Z35 1606 aa20.21■□□□□ 0.83
SMAD3-206ENST00000558739 ALKQ9UM73 1620 aa20.21■□□□□ 0.83
SMAD3-206ENST00000558739 ATP1B4Q9UN42 357 aaPredicted RBP20.21■□□□□ 0.83
SMAD3-206ENST00000558739 ZMYM3Q14202 1370 aa20.21■□□□□ 0.83
SMAD3-206ENST00000558739 TROQ12816 1431 aaPredicted RBP20.2■□□□□ 0.82
SMAD3-206ENST00000558739 PHF23Q9BUL5 403 aaPredicted RBP20.18■□□□□ 0.82
SMAD3-206ENST00000558739 PKD2Q13563 968 aa20.17■□□□□ 0.82
SMAD3-206ENST00000558739 PPP6R1Q9UPN7 881 aa20.17■□□□□ 0.82
SMAD3-206ENST00000558739 PTPRKQ15262 1439 aa20.16■□□□□ 0.82
SMAD3-206ENST00000558739 NEURL4Q96JN8 1562 aa20.15■□□□□ 0.82
SMAD3-206ENST00000558739 SAMD9LQ8IVG5 1584 aa20.14■□□□□ 0.81
SMAD3-206ENST00000558739 SENP3Q9H4L4 574 aaPredicted RBP20.13■□□□□ 0.81
SMAD3-206ENST00000558739 POLR1AO95602 1720 aaPredicted RBP20.13■□□□□ 0.81
SMAD3-206ENST00000558739 CLIP1P30622 1438 aa20.11■□□□□ 0.81
SMAD3-206ENST00000558739 CDC42BPAQ5VT25 1732 aa20.11■□□□□ 0.81
SMAD3-206ENST00000558739 DNMT1P26358 1616 aaKnown RBP20.11■□□□□ 0.81
SMAD3-206ENST00000558739 CPS1P31327 1500 aa20.11■□□□□ 0.81
SMAD3-206ENST00000558739 PLXNC1O60486 1568 aa20.1■□□□□ 0.81
SMAD3-206ENST00000558739 TOM1O60784 492 aa20.09■□□□□ 0.81
SMAD3-206ENST00000558739 ARHGAP35Q9NRY4 1499 aa20.09■□□□□ 0.81
SMAD3-206ENST00000558739 SHANK2Q9UPX8 1470 aa20.09■□□□□ 0.81
SMAD3-206ENST00000558739 FMN1Q68DA7 1419 aa20.09■□□□□ 0.81
SMAD3-206ENST00000558739 CDK11AQ9UQ88 783 aaPredicted RBP20.08■□□□□ 0.81
SMAD3-206ENST00000558739 VWDEQ8N2E2 1590 aa20.08■□□□□ 0.8
SMAD3-206ENST00000558739 SYCP2Q9BX26 1530 aa20.07■□□□□ 0.8
SMAD3-206ENST00000558739 SRCAPQ6ZRS2 3230 aa20.06■□□□□ 0.8
SMAD3-206ENST00000558739 A2ML1A8K2U0 1454 aa20.05■□□□□ 0.8
SMAD3-206ENST00000558739 RGS17Q9UGC6 210 aaPredicted RBP20.05■□□□□ 0.8
SMAD3-206ENST00000558739 ATP7AQ04656 1500 aa20.04■□□□□ 0.8
SMAD3-206ENST00000558739 EHMT2Q96KQ7 1210 aa20.04■□□□□ 0.8
SMAD3-206ENST00000558739 INO80Q9ULG1 1556 aaPredicted RBP20.04■□□□□ 0.8
SMAD3-206ENST00000558739 EEA1Q15075 1411 aa20.02■□□□□ 0.79
SMAD3-206ENST00000558739 STRCP1A6NGW2 1772 aa20.01■□□□□ 0.79
SMAD3-206ENST00000558739 A2MP01023 1474 aa19.99■□□□□ 0.79
SMAD3-206ENST00000558739 GGT6Q6P531 493 aa19.99■□□□□ 0.79
SMAD3-206ENST00000558739 SPAG9O60271 1321 aaKnown RBP19.99■□□□□ 0.79
SMAD3-206ENST00000558739 ZNF777Q9ULD5 760 aaPredicted RBP19.97■□□□□ 0.79
SMAD3-206ENST00000558739 SETD1AO15047 1707 aaKnown RBP19.96■□□□□ 0.79
SMAD3-206ENST00000558739 HNRNPMP52272 730 aaKnown RBP eCLIP19.95■□□□□ 0.78
SMAD3-206ENST00000558739 RNF17Q9BXT8 1623 aaKnown RBP19.94■□□□□ 0.78
SMAD3-206ENST00000558739 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.94■□□□□ 0.78
SMAD3-206ENST00000558739 FBXO31Q5XUX0 539 aaPredicted RBP19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms