RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 WRNQ14191 1432 aaPredicted RBP eCLIP8.24□□□□□ -1.09
LDLR-209ENST00000558528 ZC3H15Q8WU90 426 aaKnown RBP8.24□□□□□ -1.09
LDLR-209ENST00000558528 DSG3P32926 999 aa8.22□□□□□ -1.09
LDLR-209ENST00000558528 PRDM2Q13029 1718 aa8.21□□□□□ -1.09
LDLR-209ENST00000558528 KDM6BO15054 1643 aa8.21□□□□□ -1.1
LDLR-209ENST00000558528 SYNJ2O15056 1496 aa8.2□□□□□ -1.1
LDLR-209ENST00000558528 ADGRL1O94910 1474 aa8.2□□□□□ -1.1
LDLR-209ENST00000558528 ABCC8Q09428 1581 aa8.2□□□□□ -1.1
LDLR-209ENST00000558528 SNAPC4Q5SXM2 1469 aa8.19□□□□□ -1.1
LDLR-209ENST00000558528 SMYD5Q6GMV2 418 aa8.18□□□□□ -1.1
LDLR-209ENST00000558528 EEA1Q15075 1411 aa8.18□□□□□ -1.1
LDLR-209ENST00000558528 ABCC10Q5T3U5 1492 aa8.18□□□□□ -1.1
LDLR-209ENST00000558528 DNMBPQ6XZF7 1577 aa8.18□□□□□ -1.1
LDLR-209ENST00000558528 CHMP7Q8WUX9 453 aaPredicted RBP8.17□□□□□ -1.1
LDLR-209ENST00000558528 SLC24A3Q9HC58 644 aa8.17□□□□□ -1.1
LDLR-209ENST00000558528 MAGI1Q96QZ7 1491 aaPredicted RBP8.17□□□□□ -1.1
LDLR-209ENST00000558528 TESPA1A2RU30 521 aaPredicted RBP8.15□□□□□ -1.1
LDLR-209ENST00000558528 POLA1P09884 1462 aaPredicted RBP8.14□□□□□ -1.11
LDLR-209ENST00000558528 DISP3Q9P2K9 1392 aa8.14□□□□□ -1.11
LDLR-209ENST00000558528 FAM69CQ0P6D2 419 aa8.14□□□□□ -1.11
LDLR-209ENST00000558528 E2F4Q16254 413 aa8.14□□□□□ -1.11
LDLR-209ENST00000558528 CADPS2Q86UW7 1296 aa8.14□□□□□ -1.11
LDLR-209ENST00000558528 RSPH6AQ9H0K4 717 aa8.14□□□□□ -1.11
LDLR-209ENST00000558528 WDR97A6NE52 1622 aa8.14□□□□□ -1.11
LDLR-209ENST00000558528 DIP2BQ9P265 1576 aa8.14□□□□□ -1.11
LDLR-209ENST00000558528 TDRD9Q8NDG6 1382 aaKnown RBP8.13□□□□□ -1.11
LDLR-209ENST00000558528 ZMYND10O75800 440 aa8.13□□□□□ -1.11
LDLR-209ENST00000558528 SPDYE1Q8NFV5 336 aaPredicted RBP8.13□□□□□ -1.11
LDLR-209ENST00000558528 ZMYND15Q9H091 742 aa8.13□□□□□ -1.11
LDLR-209ENST00000558528 ZNF467Q7Z7K2 595 aaPredicted RBP8.12□□□□□ -1.11
LDLR-209ENST00000558528 TOP2BQ02880 1626 aa8.11□□□□□ -1.11
LDLR-209ENST00000558528 MAPKBP1O60336 1514 aa8.1□□□□□ -1.11
LDLR-209ENST00000558528 RAD54L2Q9Y4B4 1467 aa8.1□□□□□ -1.11
LDLR-209ENST00000558528 UBTFP17480 764 aaKnown RBP8.09□□□□□ -1.11
LDLR-209ENST00000558528 RASEFQ8IZ41 740 aa8.09□□□□□ -1.11
LDLR-209ENST00000558528 FAM9AQ8IZU1 332 aaPredicted RBP8.09□□□□□ -1.11
LDLR-209ENST00000558528 CEP170Q5SW79 1584 aa8.09□□□□□ -1.11
LDLR-209ENST00000558528 GRIN2BQ13224 1484 aa8.08□□□□□ -1.12
LDLR-209ENST00000558528 PYGBP11216 843 aa8.08□□□□□ -1.12
LDLR-209ENST00000558528 MNX1P50219 401 aaPredicted RBP8.08□□□□□ -1.12
LDLR-209ENST00000558528 KIF27Q86VH2 1401 aa8.08□□□□□ -1.12
LDLR-209ENST00000558528 CUX1P39880 1505 aa8.08□□□□□ -1.12
LDLR-209ENST00000558528 SOGA1O94964 1423 aa8.07□□□□□ -1.12
LDLR-209ENST00000558528 PDAP1Q13442 181 aaKnown RBP8.07□□□□□ -1.12
LDLR-209ENST00000558528 BARGINQ6ZT62 677 aa8.07□□□□□ -1.12
LDLR-209ENST00000558528 CREBZFQ9NS37 354 aa8.07□□□□□ -1.12
LDLR-209ENST00000558528 SEMA3EO15041 775 aa8.06□□□□□ -1.12
LDLR-209ENST00000558528 AK7Q96M32 723 aa8.06□□□□□ -1.12
LDLR-209ENST00000558528 SHROOM2Q13796 1616 aa8.06□□□□□ -1.12
LDLR-209ENST00000558528 BIVM-ERCC5R4GMW8 1640 aa8.06□□□□□ -1.12
LDLR-209ENST00000558528 PRR29P0C7W0 189 aa8.04□□□□□ -1.12
LDLR-209ENST00000558528 FGD5Q6ZNL6 1462 aa8.04□□□□□ -1.12
LDLR-209ENST00000558528 SPATA31D1Q6ZQQ2 1576 aa8.04□□□□□ -1.12
LDLR-209ENST00000558528 TSPOAP1O95153 1857 aa8.04□□□□□ -1.12
LDLR-209ENST00000558528 TRIM26Q12899 539 aaPredicted RBP8.03□□□□□ -1.12
LDLR-209ENST00000558528 NPM2Q86SE8 214 aaKnown RBP8.03□□□□□ -1.12
LDLR-209ENST00000558528 ARIH1Q9Y4X5 557 aaPredicted RBP8.03□□□□□ -1.12
LDLR-209ENST00000558528 NUP160Q12769 1436 aa8.02□□□□□ -1.13
LDLR-209ENST00000558528 LOC105371045A0A1W2PR82 267 aa8.01□□□□□ -1.13
LDLR-209ENST00000558528 MFRPQ9BY79 579 aa8.01□□□□□ -1.13
LDLR-209ENST00000558528 ABCA10Q8WWZ4 1543 aa8.01□□□□□ -1.13
LDLR-209ENST00000558528 IGF1RP08069 1367 aa7.99□□□□□ -1.13
LDLR-209ENST00000558528 PBRM1Q86U86 1689 aa7.99□□□□□ -1.13
LDLR-209ENST00000558528 GRIN2AQ12879 1464 aa7.99□□□□□ -1.13
LDLR-209ENST00000558528 COL17A1Q9UMD9 1497 aaPredicted RBP7.99□□□□□ -1.13
LDLR-209ENST00000558528 PPRC1Q5VV67 1664 aaKnown RBP7.98□□□□□ -1.13
LDLR-209ENST00000558528 NLRP6P59044 892 aa7.98□□□□□ -1.13
LDLR-209ENST00000558528 GOLGA3Q08378 1498 aa7.98□□□□□ -1.13
LDLR-209ENST00000558528 CARMIL1Q5VZK9 1371 aa7.97□□□□□ -1.13
LDLR-209ENST00000558528 TNIKQ9UKE5 1360 aa7.97□□□□□ -1.13
LDLR-209ENST00000558528 ADCY10Q96PN6 1610 aa7.97□□□□□ -1.13
LDLR-209ENST00000558528 AKT1S1Q96B36 256 aa7.97□□□□□ -1.13
LDLR-209ENST00000558528 PDE4AP27815 886 aa7.96□□□□□ -1.14
LDLR-209ENST00000558528 GPIHBP1Q8IV16 184 aa7.96□□□□□ -1.14
LDLR-209ENST00000558528 KRI1Q8N9T8 703 aaKnown RBP7.96□□□□□ -1.14
LDLR-209ENST00000558528 KDM4CQ9H3R0 1056 aa7.96□□□□□ -1.14
LDLR-209ENST00000558528 RUSC2Q8N2Y8 1516 aa7.96□□□□□ -1.14
LDLR-209ENST00000558528 PRXQ9BXM0 1461 aa7.95□□□□□ -1.14
LDLR-209ENST00000558528 SOX12O15370 315 aa7.95□□□□□ -1.14
LDLR-209ENST00000558528 FLIIQ13045 1269 aa7.95□□□□□ -1.14
LDLR-209ENST00000558528 IL27Q8NEV9 243 aa7.95□□□□□ -1.14
LDLR-209ENST00000558528 CERKQ8TCT0 537 aa7.95□□□□□ -1.14
LDLR-209ENST00000558528 RBM42Q9BTD8 480 aaKnown RBP7.95□□□□□ -1.14
LDLR-209ENST00000558528 CLEC11AQ9Y240 323 aa7.95□□□□□ -1.14
LDLR-209ENST00000558528 PRG4Q92954 1404 aaPredicted RBP7.95□□□□□ -1.14
LDLR-209ENST00000558528 ZBTB7CA1YPR0 619 aa7.94□□□□□ -1.14
LDLR-209ENST00000558528 MFSD10Q14728 455 aa7.94□□□□□ -1.14
LDLR-209ENST00000558528 GPBP1L1Q9HC44 474 aaPredicted RBP7.94□□□□□ -1.14
LDLR-209ENST00000558528 CCDC9Q9Y3X0 531 aaKnown RBP7.94□□□□□ -1.14
LDLR-209ENST00000558528 PSEN1P49768 467 aa7.93□□□□□ -1.14
LDLR-209ENST00000558528 ZNF579Q8NAF0 562 aaKnown RBP7.93□□□□□ -1.14
LDLR-209ENST00000558528 RAPGEF2Q9Y4G8 1499 aa7.93□□□□□ -1.14
LDLR-209ENST00000558528 ERICH3Q5RHP9 1530 aa7.93□□□□□ -1.14
LDLR-209ENST00000558528 GLI2P10070 1586 aa7.93□□□□□ -1.14
LDLR-209ENST00000558528 ABCA5Q8WWZ7 1642 aa7.92□□□□□ -1.14
LDLR-209ENST00000558528 HRCP23327 699 aa7.92□□□□□ -1.14
LDLR-209ENST00000558528 KIF21BO75037 1637 aa7.92□□□□□ -1.14
LDLR-209ENST00000558528 PDIA4P13667 645 aaKnown RBP7.91□□□□□ -1.14
LDLR-209ENST00000558528 PCF11O94913 1555 aaKnown RBP7.91□□□□□ -1.14
LDLR-209ENST00000558528 ADAMTS12P58397 1594 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms