RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ARHGEF12Q9NZN5 1544 aa21.14■□□□□ 0.97
SHMT2-230ENST00000557427 MAGI2Q86UL8 1455 aa21.13■□□□□ 0.97
SHMT2-230ENST00000557427 HECW1Q76N89 1606 aa21.13■□□□□ 0.97
SHMT2-230ENST00000557427 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.13■□□□□ 0.97
SHMT2-230ENST00000557427 CFAP74Q9C0B2 1584 aa21.1■□□□□ 0.97
SHMT2-230ENST00000557427 PLEKHD1A6NEE1 506 aa21.09■□□□□ 0.97
SHMT2-230ENST00000557427 LTBP4Q8N2S1 1624 aa21.07■□□□□ 0.96
SHMT2-230ENST00000557427 PTPRTO14522 1441 aa21.05■□□□□ 0.96
SHMT2-230ENST00000557427 ATP10AO60312 1499 aa21.05■□□□□ 0.96
SHMT2-230ENST00000557427 SCAPERQ9BY12 1400 aa21.04■□□□□ 0.96
SHMT2-230ENST00000557427 UHRF1BP1Q6BDS2 1440 aa21.04■□□□□ 0.96
SHMT2-230ENST00000557427 C9orf84Q5VXU9 1444 aa21.02■□□□□ 0.96
SHMT2-230ENST00000557427 SETD1BQ9UPS6 1966 aaKnown RBP20.99■□□□□ 0.95
SHMT2-230ENST00000557427 PLCH2O75038 1416 aa20.97■□□□□ 0.95
SHMT2-230ENST00000557427 IQSEC2Q5JU85 1478 aa20.97■□□□□ 0.95
SHMT2-230ENST00000557427 RANGAP1P46060 587 aaPredicted RBP20.95■□□□□ 0.94
SHMT2-230ENST00000557427 C3P01024 1663 aa20.9■□□□□ 0.94
SHMT2-230ENST00000557427 CDK13Q14004 1512 aaKnown RBP20.89■□□□□ 0.94
SHMT2-230ENST00000557427 NCOA1Q15788 1441 aa20.89■□□□□ 0.94
SHMT2-230ENST00000557427 AFAP1Q8N556 730 aa20.89■□□□□ 0.93
SHMT2-230ENST00000557427 EFCAB2Q5VUJ9 269 aa20.86■□□□□ 0.93
SHMT2-230ENST00000557427 CSRNP3Q8WYN3 585 aa20.86■□□□□ 0.93
SHMT2-230ENST00000557427 TRAPPC8Q9Y2L5 1435 aa20.86■□□□□ 0.93
SHMT2-230ENST00000557427 UBAP1LF5GYI3 381 aa20.84■□□□□ 0.93
SHMT2-230ENST00000557427 KDM5CP41229 1560 aa20.84■□□□□ 0.93
SHMT2-230ENST00000557427 DIP2CQ9Y2E4 1556 aa20.84■□□□□ 0.93
SHMT2-230ENST00000557427 ZNF335Q9H4Z2 1342 aaPredicted RBP20.83■□□□□ 0.93
SHMT2-230ENST00000557427 ZNF518AQ6AHZ1 1483 aa20.83■□□□□ 0.93
SHMT2-230ENST00000557427 REREQ9P2R6 1566 aa20.8■□□□□ 0.92
SHMT2-230ENST00000557427 CAMSAP1Q5T5Y3 1602 aa20.79■□□□□ 0.92
SHMT2-230ENST00000557427 MYO5CQ9NQX4 1742 aa20.79■□□□□ 0.92
SHMT2-230ENST00000557427 NCKAP5LQ9HCH0 1330 aa20.78■□□□□ 0.92
SHMT2-230ENST00000557427 ABCA6Q8N139 1617 aa20.78■□□□□ 0.92
SHMT2-230ENST00000557427 MYT1LQ9UL68 1186 aa20.76■□□□□ 0.91
SHMT2-230ENST00000557427 AGLP35573 1532 aa20.76■□□□□ 0.91
SHMT2-230ENST00000557427 MLH3Q9UHC1 1453 aa20.75■□□□□ 0.91
SHMT2-230ENST00000557427 KIF14Q15058 1648 aa20.75■□□□□ 0.91
SHMT2-230ENST00000557427 MED1Q15648 1581 aaPredicted RBP20.73■□□□□ 0.91
SHMT2-230ENST00000557427 ESF1Q9H501 851 aaKnown RBP20.73■□□□□ 0.91
SHMT2-230ENST00000557427 HSPA1LP34931 641 aa20.72■□□□□ 0.91
SHMT2-230ENST00000557427 ARHGAP5Q13017 1502 aa20.72■□□□□ 0.91
SHMT2-230ENST00000557427 NPATQ14207 1427 aa20.69■□□□□ 0.9
SHMT2-230ENST00000557427 CNTLNQ9NXG0 1405 aa20.69■□□□□ 0.9
SHMT2-230ENST00000557427 ATP1B4Q9UN42 357 aaPredicted RBP20.66■□□□□ 0.9
SHMT2-230ENST00000557427 ZMYM3Q14202 1370 aa20.66■□□□□ 0.9
SHMT2-230ENST00000557427 CDC42BPBQ9Y5S2 1711 aa20.64■□□□□ 0.9
SHMT2-230ENST00000557427 TCOF1Q13428 1488 aaKnown RBP20.64■□□□□ 0.89
SHMT2-230ENST00000557427 KIDINS220Q9ULH0 1771 aa20.64■□□□□ 0.89
SHMT2-230ENST00000557427 PLA2R1Q13018 1463 aa20.63■□□□□ 0.89
SHMT2-230ENST00000557427 TROQ12816 1431 aaPredicted RBP20.63■□□□□ 0.89
SHMT2-230ENST00000557427 PKD2Q13563 968 aa20.63■□□□□ 0.89
SHMT2-230ENST00000557427 MROH2AA6NES4 1674 aa20.62■□□□□ 0.89
SHMT2-230ENST00000557427 PIP4K2BP78356 416 aa20.62■□□□□ 0.89
SHMT2-230ENST00000557427 CDK11AQ9UQ88 783 aaPredicted RBP20.62■□□□□ 0.89
SHMT2-230ENST00000557427 ABCC1P33527 1531 aa20.61■□□□□ 0.89
SHMT2-230ENST00000557427 SCAF1Q9H7N4 1312 aaKnown RBP20.6■□□□□ 0.89
SHMT2-230ENST00000557427 ZNF142P52746 1687 aaPredicted RBP20.58■□□□□ 0.89
SHMT2-230ENST00000557427 MYO3AQ8NEV4 1616 aa20.58■□□□□ 0.89
SHMT2-230ENST00000557427 CHIC1Q5VXU3 224 aa20.58■□□□□ 0.89
SHMT2-230ENST00000557427 PPP6R1Q9UPN7 881 aa20.58■□□□□ 0.89
SHMT2-230ENST00000557427 ITSN2Q9NZM3 1697 aa20.58■□□□□ 0.88
SHMT2-230ENST00000557427 CEP170BQ9Y4F5 1589 aaPredicted RBP20.56■□□□□ 0.88
SHMT2-230ENST00000557427 PTPRKQ15262 1439 aa20.56■□□□□ 0.88
SHMT2-230ENST00000557427 FMN1Q68DA7 1419 aa20.55■□□□□ 0.88
SHMT2-230ENST00000557427 CLIP1P30622 1438 aa20.54■□□□□ 0.88
SHMT2-230ENST00000557427 LRRIQ1Q96JM4 1722 aa20.54■□□□□ 0.88
SHMT2-230ENST00000557427 TOM1O60784 492 aa20.54■□□□□ 0.88
SHMT2-230ENST00000557427 EEA1Q15075 1411 aa20.53■□□□□ 0.88
SHMT2-230ENST00000557427 PREX2Q70Z35 1606 aa20.53■□□□□ 0.88
SHMT2-230ENST00000557427 CLTCQ00610 1675 aaKnown RBP20.53■□□□□ 0.88
SHMT2-230ENST00000557427 SUPT6HQ7KZ85 1726 aaKnown RBP20.53■□□□□ 0.88
SHMT2-230ENST00000557427 PHF23Q9BUL5 403 aaPredicted RBP20.52■□□□□ 0.88
SHMT2-230ENST00000557427 ARHGAP35Q9NRY4 1499 aa20.51■□□□□ 0.87
SHMT2-230ENST00000557427 ALKQ9UM73 1620 aa20.51■□□□□ 0.87
SHMT2-230ENST00000557427 SAMD9LQ8IVG5 1584 aa20.51■□□□□ 0.87
SHMT2-230ENST00000557427 CPS1P31327 1500 aa20.48■□□□□ 0.87
SHMT2-230ENST00000557427 SHANK2Q9UPX8 1470 aa20.47■□□□□ 0.87
SHMT2-230ENST00000557427 DNMT1P26358 1616 aaKnown RBP20.46■□□□□ 0.87
SHMT2-230ENST00000557427 EHMT2Q96KQ7 1210 aa20.46■□□□□ 0.87
SHMT2-230ENST00000557427 NEURL4Q96JN8 1562 aa20.46■□□□□ 0.87
SHMT2-230ENST00000557427 A2ML1A8K2U0 1454 aa20.44■□□□□ 0.86
SHMT2-230ENST00000557427 PLXNC1O60486 1568 aa20.44■□□□□ 0.86
SHMT2-230ENST00000557427 GGT6Q6P531 493 aa20.44■□□□□ 0.86
SHMT2-230ENST00000557427 RGS17Q9UGC6 210 aaPredicted RBP20.44■□□□□ 0.86
SHMT2-230ENST00000557427 SPAG9O60271 1321 aaKnown RBP20.44■□□□□ 0.86
SHMT2-230ENST00000557427 CDC42BPAQ5VT25 1732 aa20.44■□□□□ 0.86
SHMT2-230ENST00000557427 HNRNPMP52272 730 aaKnown RBP eCLIP20.42■□□□□ 0.86
SHMT2-230ENST00000557427 ZNF777Q9ULD5 760 aaPredicted RBP20.41■□□□□ 0.86
SHMT2-230ENST00000557427 SYCP2Q9BX26 1530 aa20.41■□□□□ 0.86
SHMT2-230ENST00000557427 A2MP01023 1474 aa20.4■□□□□ 0.86
SHMT2-230ENST00000557427 VWDEQ8N2E2 1590 aa20.4■□□□□ 0.86
SHMT2-230ENST00000557427 SENP3Q9H4L4 574 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-230ENST00000557427 POLR1AO95602 1720 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-230ENST00000557427 ATP7AQ04656 1500 aa20.38■□□□□ 0.85
SHMT2-230ENST00000557427 UBTFP17480 764 aaKnown RBP20.37■□□□□ 0.85
SHMT2-230ENST00000557427 INO80Q9ULG1 1556 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-230ENST00000557427 FBXO31Q5XUX0 539 aaPredicted RBP20.35■□□□□ 0.85
SHMT2-230ENST00000557427 GPATCH8Q9UKJ3 1502 aaKnown RBP20.34■□□□□ 0.85
SHMT2-230ENST00000557427 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.32■□□□□ 0.84
SHMT2-230ENST00000557427 KIAA1107Q9UPP5 1409 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms