RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 CDK13Q14004 1512 aaKnown RBP23.41■■□□□ 1.34
ACTN1-219ENST00000556432 EEA1Q15075 1411 aa23.37■■□□□ 1.33
ACTN1-219ENST00000556432 ATP1B4Q9UN42 357 aaPredicted RBP23.37■■□□□ 1.33
ACTN1-219ENST00000556432 ATP10AO60312 1499 aa23.36■■□□□ 1.33
ACTN1-219ENST00000556432 PLCH2O75038 1416 aa23.36■■□□□ 1.33
ACTN1-219ENST00000556432 C9orf84Q5VXU9 1444 aa23.36■■□□□ 1.33
ACTN1-219ENST00000556432 DISP3Q9P2K9 1392 aa23.36■■□□□ 1.33
ACTN1-219ENST00000556432 PREX1Q8TCU6 1659 aa23.35■■□□□ 1.33
ACTN1-219ENST00000556432 ARHGEF12Q9NZN5 1544 aa23.35■■□□□ 1.33
ACTN1-219ENST00000556432 CEBPAP49715 358 aaPredicted RBP23.35■■□□□ 1.33
ACTN1-219ENST00000556432 EFCAB2Q5VUJ9 269 aa23.32■■□□□ 1.32
ACTN1-219ENST00000556432 MYT1LQ9UL68 1186 aa23.32■■□□□ 1.32
ACTN1-219ENST00000556432 DMRT2Q9Y5R5 561 aa23.31■■□□□ 1.32
ACTN1-219ENST00000556432 UHRF1BP1Q6BDS2 1440 aa23.29■■□□□ 1.32
ACTN1-219ENST00000556432 MYO5CQ9NQX4 1742 aa23.28■■□□□ 1.32
ACTN1-219ENST00000556432 ILDR2Q71H61 639 aa23.26■■□□□ 1.31
ACTN1-219ENST00000556432 ZNF518AQ6AHZ1 1483 aa23.25■■□□□ 1.31
ACTN1-219ENST00000556432 EHMT2Q96KQ7 1210 aa23.25■■□□□ 1.31
ACTN1-219ENST00000556432 CDK11AQ9UQ88 783 aaPredicted RBP23.25■■□□□ 1.31
ACTN1-219ENST00000556432 ARHGAP5Q13017 1502 aa23.23■■□□□ 1.31
ACTN1-219ENST00000556432 STRCQ7RTU9 1775 aa23.22■■□□□ 1.31
ACTN1-219ENST00000556432 AFAP1Q8N556 730 aa23.22■■□□□ 1.31
ACTN1-219ENST00000556432 KIF14Q15058 1648 aa23.22■■□□□ 1.31
ACTN1-219ENST00000556432 SOCS7O14512 581 aa23.21■■□□□ 1.31
ACTN1-219ENST00000556432 FMN1Q68DA7 1419 aa23.21■■□□□ 1.31
ACTN1-219ENST00000556432 ESF1Q9H501 851 aaKnown RBP23.2■■□□□ 1.3
ACTN1-219ENST00000556432 UBTFP17480 764 aaKnown RBP23.18■■□□□ 1.3
ACTN1-219ENST00000556432 KDM5CP41229 1560 aa23.17■■□□□ 1.3
ACTN1-219ENST00000556432 CLIP1P30622 1438 aa23.16■■□□□ 1.3
ACTN1-219ENST00000556432 SETD1BQ9UPS6 1966 aaKnown RBP23.16■■□□□ 1.3
ACTN1-219ENST00000556432 TROQ12816 1431 aaPredicted RBP23.16■■□□□ 1.3
ACTN1-219ENST00000556432 DIP2CQ9Y2E4 1556 aa23.15■■□□□ 1.3
ACTN1-219ENST00000556432 SPATA31D1Q6ZQQ2 1576 aa23.14■■□□□ 1.3
ACTN1-219ENST00000556432 PTPRTO14522 1441 aa23.13■■□□□ 1.29
ACTN1-219ENST00000556432 C3P01024 1663 aa23.12■■□□□ 1.29
ACTN1-219ENST00000556432 ABCA6Q8N139 1617 aa23.11■■□□□ 1.29
ACTN1-219ENST00000556432 ARHGAP35Q9NRY4 1499 aa23.1■■□□□ 1.29
ACTN1-219ENST00000556432 REREQ9P2R6 1566 aa23.1■■□□□ 1.29
ACTN1-219ENST00000556432 TRAPPC8Q9Y2L5 1435 aa23.08■■□□□ 1.28
ACTN1-219ENST00000556432 MLH3Q9UHC1 1453 aa23.07■■□□□ 1.28
ACTN1-219ENST00000556432 AGLP35573 1532 aa23.04■■□□□ 1.28
ACTN1-219ENST00000556432 CDC42BPBQ9Y5S2 1711 aa23.03■■□□□ 1.28
ACTN1-219ENST00000556432 NCOA1Q15788 1441 aa23.03■■□□□ 1.28
ACTN1-219ENST00000556432 LTBP4Q8N2S1 1624 aa23.03■■□□□ 1.28
ACTN1-219ENST00000556432 ABCC1P33527 1531 aa23.03■■□□□ 1.28
ACTN1-219ENST00000556432 CNTLNQ9NXG0 1405 aa23.02■■□□□ 1.28
ACTN1-219ENST00000556432 PREX2Q70Z35 1606 aa23.01■■□□□ 1.27
ACTN1-219ENST00000556432 ITSN2Q9NZM3 1697 aa23■■□□□ 1.27
ACTN1-219ENST00000556432 IQSEC2Q5JU85 1478 aa22.99■■□□□ 1.27
ACTN1-219ENST00000556432 LRRIQ1Q96JM4 1722 aa22.99■■□□□ 1.27
ACTN1-219ENST00000556432 CAMSAP1Q5T5Y3 1602 aa22.97■■□□□ 1.27
ACTN1-219ENST00000556432 ZNF777Q9ULD5 760 aaPredicted RBP22.95■■□□□ 1.26
ACTN1-219ENST00000556432 KIDINS220Q9ULH0 1771 aa22.95■■□□□ 1.26
ACTN1-219ENST00000556432 NPATQ14207 1427 aa22.94■■□□□ 1.26
ACTN1-219ENST00000556432 CCDC18Q5T9S5 1454 aa22.93■■□□□ 1.26
ACTN1-219ENST00000556432 NCKAP5LQ9HCH0 1330 aa22.93■■□□□ 1.26
ACTN1-219ENST00000556432 UBAP1LF5GYI3 381 aa22.93■■□□□ 1.26
ACTN1-219ENST00000556432 ZNF335Q9H4Z2 1342 aaPredicted RBP22.91■■□□□ 1.26
ACTN1-219ENST00000556432 ZMYM3Q14202 1370 aa22.9■■□□□ 1.26
ACTN1-219ENST00000556432 MROH2AA6NES4 1674 aa22.9■■□□□ 1.26
ACTN1-219ENST00000556432 SAMD9LQ8IVG5 1584 aa22.89■■□□□ 1.26
ACTN1-219ENST00000556432 SPAG9O60271 1321 aaKnown RBP22.89■■□□□ 1.26
ACTN1-219ENST00000556432 CDC42BPAQ5VT25 1732 aa22.88■■□□□ 1.25
ACTN1-219ENST00000556432 CASKIN1Q8WXD9 1431 aa22.88■■□□□ 1.25
ACTN1-219ENST00000556432 SUPT6HQ7KZ85 1726 aaKnown RBP22.87■■□□□ 1.25
ACTN1-219ENST00000556432 SYCP2Q9BX26 1530 aa22.87■■□□□ 1.25
ACTN1-219ENST00000556432 PKD2Q13563 968 aa22.84■■□□□ 1.25
ACTN1-219ENST00000556432 HNRNPMP52272 730 aaKnown RBP eCLIP22.83■■□□□ 1.25
ACTN1-219ENST00000556432 CLTCQ00610 1675 aaKnown RBP22.83■■□□□ 1.24
ACTN1-219ENST00000556432 MYO3AQ8NEV4 1616 aa22.82■■□□□ 1.24
ACTN1-219ENST00000556432 GGT6Q6P531 493 aa22.81■■□□□ 1.24
ACTN1-219ENST00000556432 ATP7AQ04656 1500 aa22.81■■□□□ 1.24
ACTN1-219ENST00000556432 SCAF1Q9H7N4 1312 aaKnown RBP22.81■■□□□ 1.24
ACTN1-219ENST00000556432 ZNF142P52746 1687 aaPredicted RBP22.81■■□□□ 1.24
ACTN1-219ENST00000556432 CEP170BQ9Y4F5 1589 aaPredicted RBP22.8■■□□□ 1.24
ACTN1-219ENST00000556432 PLA2R1Q13018 1463 aa22.8■■□□□ 1.24
ACTN1-219ENST00000556432 PPP6R1Q9UPN7 881 aa22.78■■□□□ 1.24
ACTN1-219ENST00000556432 A2MP01023 1474 aa22.78■■□□□ 1.24
ACTN1-219ENST00000556432 FYCO1Q9BQS8 1478 aa22.78■■□□□ 1.24
ACTN1-219ENST00000556432 PTPRKQ15262 1439 aa22.77■■□□□ 1.24
ACTN1-219ENST00000556432 GPATCH8Q9UKJ3 1502 aaKnown RBP22.77■■□□□ 1.24
ACTN1-219ENST00000556432 CFDP1Q9UEE9 299 aaPredicted RBP22.76■■□□□ 1.23
ACTN1-219ENST00000556432 TCOF1Q13428 1488 aaKnown RBP22.76■■□□□ 1.23
ACTN1-219ENST00000556432 PLEKHH2Q8IVE3 1493 aa22.75■■□□□ 1.23
ACTN1-219ENST00000556432 PLXNC1O60486 1568 aa22.75■■□□□ 1.23
ACTN1-219ENST00000556432 INO80Q9ULG1 1556 aaPredicted RBP22.74■■□□□ 1.23
ACTN1-219ENST00000556432 KIAA1107Q9UPP5 1409 aa22.73■■□□□ 1.23
ACTN1-219ENST00000556432 PIP4K2BP78356 416 aa22.72■■□□□ 1.23
ACTN1-219ENST00000556432 CCNB3Q8WWL7 1395 aa22.72■■□□□ 1.23
ACTN1-219ENST00000556432 A2ML1A8K2U0 1454 aa22.68■■□□□ 1.22
ACTN1-219ENST00000556432 HSPA1LP34931 641 aa22.68■■□□□ 1.22
ACTN1-219ENST00000556432 CHIC1Q5VXU3 224 aa22.68■■□□□ 1.22
ACTN1-219ENST00000556432 ADGBQ8N7X0 1667 aa22.66■■□□□ 1.22
ACTN1-219ENST00000556432 MTUS2Q5JR59 1369 aa22.65■■□□□ 1.22
ACTN1-219ENST00000556432 TOM1O60784 492 aa22.65■■□□□ 1.22
ACTN1-219ENST00000556432 DNMT1P26358 1616 aaKnown RBP22.64■■□□□ 1.22
ACTN1-219ENST00000556432 MED1Q15648 1581 aaPredicted RBP22.64■■□□□ 1.22
ACTN1-219ENST00000556432 CPS1P31327 1500 aa22.62■■□□□ 1.21
ACTN1-219ENST00000556432 TNRQ92752 1358 aa22.61■■□□□ 1.21
ACTN1-219ENST00000556432 ZNF644Q9H582 1327 aaPredicted RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms