RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 TPM2P07951 284 aa12.54□□□□□ -0.4
SIX4-202ENST00000554079 EXOC6Q8TAG9 804 aa12.52□□□□□ -0.41
SIX4-202ENST00000554079 TIAM1Q13009 1591 aa12.51□□□□□ -0.41
SIX4-202ENST00000554079 NCOA1Q15788 1441 aa12.5□□□□□ -0.41
SIX4-202ENST00000554079 XRCC6P12956 609 aaKnown RBP eCLIP12.49□□□□□ -0.41
SIX4-202ENST00000554079 RRP1P56182 461 aaKnown RBP12.49□□□□□ -0.41
SIX4-202ENST00000554079 MAP3K1Q13233 1512 aa12.49□□□□□ -0.41
SIX4-202ENST00000554079 FSD2A1L4K1 749 aa12.49□□□□□ -0.41
SIX4-202ENST00000554079 GTF2E1P29083 439 aaPredicted RBP12.49□□□□□ -0.41
SIX4-202ENST00000554079 RANGAP1P46060 587 aaPredicted RBP12.49□□□□□ -0.41
SIX4-202ENST00000554079 HSPA5P11021 654 aaKnown RBP12.48□□□□□ -0.41
SIX4-202ENST00000554079 TAF7LQ5H9L4 462 aa12.48□□□□□ -0.41
SIX4-202ENST00000554079 LAMC3Q9Y6N6 1575 aa12.47□□□□□ -0.41
SIX4-202ENST00000554079 CCDC7Q96M83 1385 aa12.46□□□□□ -0.41
SIX4-202ENST00000554079 ERCC6Q03468 1493 aa12.46□□□□□ -0.41
SIX4-202ENST00000554079 BBXQ8WY36 941 aaPredicted RBP12.45□□□□□ -0.42
SIX4-202ENST00000554079 ERBB4Q15303 1308 aa12.45□□□□□ -0.42
SIX4-202ENST00000554079 NESP48681 1621 aa12.45□□□□□ -0.42
SIX4-202ENST00000554079 SMAP1Q8IYB5 467 aaPredicted RBP12.45□□□□□ -0.42
SIX4-202ENST00000554079 PANK2Q9BZ23 570 aa12.45□□□□□ -0.42
SIX4-202ENST00000554079 NAP1L2Q9ULW6 460 aaPredicted RBP12.45□□□□□ -0.42
SIX4-202ENST00000554079 CFAP43Q8NDM7 1665 aa12.44□□□□□ -0.42
SIX4-202ENST00000554079 CADPSQ9ULU8 1353 aa12.44□□□□□ -0.42
SIX4-202ENST00000554079 STAC3Q96MF2 364 aa12.44□□□□□ -0.42
SIX4-202ENST00000554079 SKAP1Q86WV1 359 aa12.43□□□□□ -0.42
SIX4-202ENST00000554079 ARID4BQ4LE39 1312 aaPredicted RBP12.43□□□□□ -0.42
SIX4-202ENST00000554079 ESPNB1AK53 854 aa12.42□□□□□ -0.42
SIX4-202ENST00000554079 PRXQ9BXM0 1461 aa12.42□□□□□ -0.42
SIX4-202ENST00000554079 PHLDB1Q86UU1 1377 aa12.41□□□□□ -0.42
SIX4-202ENST00000554079 PDS5BQ9NTI5 1447 aa12.41□□□□□ -0.42
SIX4-202ENST00000554079 GOLGA6L3A6NEY3 463 aa12.41□□□□□ -0.42
SIX4-202ENST00000554079 C8orf34Q49A92 452 aa12.41□□□□□ -0.42
SIX4-202ENST00000554079 ARHGAP35Q9NRY4 1499 aa12.41□□□□□ -0.42
SIX4-202ENST00000554079 MYOM3Q5VTT5 1437 aa12.39□□□□□ -0.43
SIX4-202ENST00000554079 MAP7D2Q96T17 732 aa12.39□□□□□ -0.43
SIX4-202ENST00000554079 CCDC18Q5T9S5 1454 aa12.39□□□□□ -0.43
SIX4-202ENST00000554079 LRRC9Q6ZRR7 1453 aa12.39□□□□□ -0.43
SIX4-202ENST00000554079 RIPK4P57078 832 aa12.38□□□□□ -0.43
SIX4-202ENST00000554079 IPO4Q8TEX9 1081 aaKnown RBP12.38□□□□□ -0.43
SIX4-202ENST00000554079 UACAQ9BZF9 1416 aa12.38□□□□□ -0.43
SIX4-202ENST00000554079 FAM161AQ3B820 660 aa12.38□□□□□ -0.43
SIX4-202ENST00000554079 CHMP4BQ9H444 224 aaKnown RBP12.38□□□□□ -0.43
SIX4-202ENST00000554079 PTPN23Q9H3S7 1636 aa12.38□□□□□ -0.43
SIX4-202ENST00000554079 UTP14CQ5TAP6 766 aaKnown RBP12.37□□□□□ -0.43
SIX4-202ENST00000554079 CANXP27824 592 aaKnown RBP12.37□□□□□ -0.43
SIX4-202ENST00000554079 EIF4G2P78344 907 aaKnown RBP eCLIP12.37□□□□□ -0.43
SIX4-202ENST00000554079 KIAA1211Q6ZU35 1233 aa12.37□□□□□ -0.43
SIX4-202ENST00000554079 DHX29Q7Z478 1369 aaKnown RBP12.36□□□□□ -0.43
SIX4-202ENST00000554079 KTN1Q86UP2 1357 aaKnown RBP12.36□□□□□ -0.43
SIX4-202ENST00000554079 KDM2BQ8NHM5 1336 aa12.36□□□□□ -0.43
SIX4-202ENST00000554079 ZHX1Q9UKY1 873 aaPredicted RBP12.36□□□□□ -0.43
SIX4-202ENST00000554079 RCAN3Q9UKA8 241 aa12.35□□□□□ -0.43
SIX4-202ENST00000554079 CFTRP13569 1480 aa12.34□□□□□ -0.43
SIX4-202ENST00000554079 TERF1P54274 439 aa12.34□□□□□ -0.43
SIX4-202ENST00000554079 ARXQ96QS3 562 aa12.34□□□□□ -0.43
SIX4-202ENST00000554079 MRE11P49959 708 aa12.33□□□□□ -0.43
SIX4-202ENST00000554079 DMTNQ08495 405 aa12.33□□□□□ -0.43
SIX4-202ENST00000554079 RSPH4AQ5TD94 716 aa12.33□□□□□ -0.43
SIX4-202ENST00000554079 LRPPRCP42704 1394 aaKnown RBP12.33□□□□□ -0.44
SIX4-202ENST00000554079 ANTXR1Q9H6X2 564 aa12.33□□□□□ -0.44
SIX4-202ENST00000554079 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.32□□□□□ -0.44
SIX4-202ENST00000554079 TOP2BQ02880 1626 aa12.32□□□□□ -0.44
SIX4-202ENST00000554079 HECW1Q76N89 1606 aa12.32□□□□□ -0.44
SIX4-202ENST00000554079 USP19O94966 1318 aa12.31□□□□□ -0.44
SIX4-202ENST00000554079 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
SIX4-202ENST00000554079 AQRO60306 1485 aaKnown RBP eCLIP12.31□□□□□ -0.44
SIX4-202ENST00000554079 KIF7Q2M1P5 1343 aa12.31□□□□□ -0.44
SIX4-202ENST00000554079 FAM50AQ14320 339 aaKnown RBP12.3□□□□□ -0.44
SIX4-202ENST00000554079 PNISRQ8TF01 805 aaKnown RBP12.3□□□□□ -0.44
SIX4-202ENST00000554079 MYH16Q9H6N6 1097 aa12.3□□□□□ -0.44
SIX4-202ENST00000554079 KIF21AQ7Z4S6 1674 aa12.3□□□□□ -0.44
SIX4-202ENST00000554079 OFD1O75665 1012 aa12.3□□□□□ -0.44
SIX4-202ENST00000554079 NLRP1Q9C000 1473 aa12.29□□□□□ -0.44
SIX4-202ENST00000554079 NCLP19338 710 aaKnown RBP12.29□□□□□ -0.44
SIX4-202ENST00000554079 CNGB1Q14028 1251 aaPredicted RBP12.29□□□□□ -0.44
SIX4-202ENST00000554079 PAXIP1Q6ZW49 1069 aaPredicted RBP12.29□□□□□ -0.44
SIX4-202ENST00000554079 CRBNQ96SW2 442 aa12.29□□□□□ -0.44
SIX4-202ENST00000554079 GRPEL1Q9HAV7 217 aa12.29□□□□□ -0.44
SIX4-202ENST00000554079 TMEM51Q9NW97 253 aa12.29□□□□□ -0.44
SIX4-202ENST00000554079 SPATA31E1Q6ZUB1 1445 aa12.29□□□□□ -0.44
SIX4-202ENST00000554079 SENP3-EIF4A1A0A087X0R7 540 aa12.28□□□□□ -0.44
SIX4-202ENST00000554079 HFM1A2PYH4 1435 aa12.28□□□□□ -0.44
SIX4-202ENST00000554079 FANCD2Q9BXW9 1451 aa12.28□□□□□ -0.44
SIX4-202ENST00000554079 BCORL1Q5H9F3 1711 aa12.28□□□□□ -0.44
SIX4-202ENST00000554079 PRDM10Q9NQV6 1147 aa12.27□□□□□ -0.44
SIX4-202ENST00000554079 PPP4R3BQ5MIZ7 849 aa12.27□□□□□ -0.45
SIX4-202ENST00000554079 ISY1Q9ULR0 285 aaKnown RBP12.27□□□□□ -0.45
SIX4-202ENST00000554079 ZSCAN20P17040 1043 aaPredicted RBP12.26□□□□□ -0.45
SIX4-202ENST00000554079 ZNF326Q5BKZ1 582 aaKnown RBP12.26□□□□□ -0.45
SIX4-202ENST00000554079 CENPQQ7L2Z9 268 aaPredicted RBP12.26□□□□□ -0.45
SIX4-202ENST00000554079 SLKQ9H2G2 1235 aaPredicted RBP12.26□□□□□ -0.45
SIX4-202ENST00000554079 MCM4P33991 863 aa12.25□□□□□ -0.45
SIX4-202ENST00000554079 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.25□□□□□ -0.45
SIX4-202ENST00000554079 MTERF4Q7Z6M4 381 aaKnown RBP12.25□□□□□ -0.45
SIX4-202ENST00000554079 KLHL34Q8N239 644 aa12.25□□□□□ -0.45
SIX4-202ENST00000554079 FAM13BQ9NYF5 915 aa12.25□□□□□ -0.45
SIX4-202ENST00000554079 DENND4BO75064 1496 aaPredicted RBP12.25□□□□□ -0.45
SIX4-202ENST00000554079 THOC2Q8NI27 1593 aaKnown RBP12.25□□□□□ -0.45
SIX4-202ENST00000554079 CTTNBP2Q8WZ74 1663 aa12.24□□□□□ -0.45
SIX4-202ENST00000554079 MRC2Q9UBG0 1479 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms