RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 CEBPAP49715 358 aaPredicted RBP23.66■■□□□ 1.38
PRPF39-204ENST00000553605 PREX1Q8TCU6 1659 aa23.65■■□□□ 1.38
PRPF39-204ENST00000553605 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.64■■□□□ 1.38
PRPF39-204ENST00000553605 HECW1Q76N89 1606 aa23.63■■□□□ 1.37
PRPF39-204ENST00000553605 ARHGEF12Q9NZN5 1544 aa23.62■■□□□ 1.37
PRPF39-204ENST00000553605 STRCQ7RTU9 1775 aa23.62■■□□□ 1.37
PRPF39-204ENST00000553605 ATP10AO60312 1499 aa23.59■■□□□ 1.37
PRPF39-204ENST00000553605 SCAPERQ9BY12 1400 aa23.59■■□□□ 1.37
PRPF39-204ENST00000553605 RANGAP1P46060 587 aaPredicted RBP23.57■■□□□ 1.36
PRPF39-204ENST00000553605 UHRF1BP1Q6BDS2 1440 aa23.57■■□□□ 1.36
PRPF39-204ENST00000553605 C9orf84Q5VXU9 1444 aa23.55■■□□□ 1.36
PRPF39-204ENST00000553605 PTPRTO14522 1441 aa23.53■■□□□ 1.36
PRPF39-204ENST00000553605 PLCH2O75038 1416 aa23.51■■□□□ 1.35
PRPF39-204ENST00000553605 CSRNP3Q8WYN3 585 aa23.5■■□□□ 1.35
PRPF39-204ENST00000553605 SETD1BQ9UPS6 1966 aaKnown RBP23.5■■□□□ 1.35
PRPF39-204ENST00000553605 EFCAB2Q5VUJ9 269 aa23.46■■□□□ 1.35
PRPF39-204ENST00000553605 LTBP4Q8N2S1 1624 aa23.46■■□□□ 1.35
PRPF39-204ENST00000553605 IQSEC2Q5JU85 1478 aa23.44■■□□□ 1.34
PRPF39-204ENST00000553605 MYT1LQ9UL68 1186 aa23.4■■□□□ 1.34
PRPF39-204ENST00000553605 CDK13Q14004 1512 aaKnown RBP23.39■■□□□ 1.34
PRPF39-204ENST00000553605 AFAP1Q8N556 730 aa23.39■■□□□ 1.33
PRPF39-204ENST00000553605 ZNF518AQ6AHZ1 1483 aa23.37■■□□□ 1.33
PRPF39-204ENST00000553605 ESF1Q9H501 851 aaKnown RBP23.37■■□□□ 1.33
PRPF39-204ENST00000553605 TRAPPC8Q9Y2L5 1435 aa23.36■■□□□ 1.33
PRPF39-204ENST00000553605 C3P01024 1663 aa23.35■■□□□ 1.33
PRPF39-204ENST00000553605 NCOA1Q15788 1441 aa23.33■■□□□ 1.33
PRPF39-204ENST00000553605 MYO5CQ9NQX4 1742 aa23.33■■□□□ 1.32
PRPF39-204ENST00000553605 UBAP1LF5GYI3 381 aa23.32■■□□□ 1.32
PRPF39-204ENST00000553605 KDM5CP41229 1560 aa23.31■■□□□ 1.32
PRPF39-204ENST00000553605 ATP1B4Q9UN42 357 aaPredicted RBP23.3■■□□□ 1.32
PRPF39-204ENST00000553605 REREQ9P2R6 1566 aa23.3■■□□□ 1.32
PRPF39-204ENST00000553605 DIP2CQ9Y2E4 1556 aa23.3■■□□□ 1.32
PRPF39-204ENST00000553605 CDK11AQ9UQ88 783 aaPredicted RBP23.29■■□□□ 1.32
PRPF39-204ENST00000553605 ARHGAP5Q13017 1502 aa23.26■■□□□ 1.31
PRPF39-204ENST00000553605 ZNF335Q9H4Z2 1342 aaPredicted RBP23.25■■□□□ 1.31
PRPF39-204ENST00000553605 MLH3Q9UHC1 1453 aa23.24■■□□□ 1.31
PRPF39-204ENST00000553605 AGLP35573 1532 aa23.24■■□□□ 1.31
PRPF39-204ENST00000553605 CAMSAP1Q5T5Y3 1602 aa23.24■■□□□ 1.31
PRPF39-204ENST00000553605 NCKAP5LQ9HCH0 1330 aa23.24■■□□□ 1.31
PRPF39-204ENST00000553605 CNTLNQ9NXG0 1405 aa23.23■■□□□ 1.31
PRPF39-204ENST00000553605 ABCA6Q8N139 1617 aa23.22■■□□□ 1.31
PRPF39-204ENST00000553605 KIF14Q15058 1648 aa23.22■■□□□ 1.31
PRPF39-204ENST00000553605 EEA1Q15075 1411 aa23.19■■□□□ 1.3
PRPF39-204ENST00000553605 NPATQ14207 1427 aa23.18■■□□□ 1.3
PRPF39-204ENST00000553605 TROQ12816 1431 aaPredicted RBP23.17■■□□□ 1.3
PRPF39-204ENST00000553605 FMN1Q68DA7 1419 aa23.16■■□□□ 1.3
PRPF39-204ENST00000553605 PKD2Q13563 968 aa23.15■■□□□ 1.3
PRPF39-204ENST00000553605 CLIP1P30622 1438 aa23.15■■□□□ 1.3
PRPF39-204ENST00000553605 ZMYM3Q14202 1370 aa23.14■■□□□ 1.3
PRPF39-204ENST00000553605 HSPA1LP34931 641 aa23.12■■□□□ 1.29
PRPF39-204ENST00000553605 CDC42BPBQ9Y5S2 1711 aa23.11■■□□□ 1.29
PRPF39-204ENST00000553605 SCAF1Q9H7N4 1312 aaKnown RBP23.09■■□□□ 1.29
PRPF39-204ENST00000553605 PLA2R1Q13018 1463 aa23.09■■□□□ 1.29
PRPF39-204ENST00000553605 MED1Q15648 1581 aaPredicted RBP23.09■■□□□ 1.29
PRPF39-204ENST00000553605 MROH2AA6NES4 1674 aa23.09■■□□□ 1.29
PRPF39-204ENST00000553605 KIDINS220Q9ULH0 1771 aa23.08■■□□□ 1.29
PRPF39-204ENST00000553605 ABCC1P33527 1531 aa23.08■■□□□ 1.28
PRPF39-204ENST00000553605 PIP4K2BP78356 416 aa23.07■■□□□ 1.28
PRPF39-204ENST00000553605 PPP6R1Q9UPN7 881 aa23.07■■□□□ 1.28
PRPF39-204ENST00000553605 TCOF1Q13428 1488 aaKnown RBP23.05■■□□□ 1.28
PRPF39-204ENST00000553605 ITSN2Q9NZM3 1697 aa23.04■■□□□ 1.28
PRPF39-204ENST00000553605 TOM1O60784 492 aa23.04■■□□□ 1.28
PRPF39-204ENST00000553605 PREX2Q70Z35 1606 aa23.02■■□□□ 1.28
PRPF39-204ENST00000553605 ZNF142P52746 1687 aaPredicted RBP23.01■■□□□ 1.27
PRPF39-204ENST00000553605 ARHGAP35Q9NRY4 1499 aa23.01■■□□□ 1.27
PRPF39-204ENST00000553605 UBTFP17480 764 aaKnown RBP23.01■■□□□ 1.27
PRPF39-204ENST00000553605 CEP170BQ9Y4F5 1589 aaPredicted RBP23.01■■□□□ 1.27
PRPF39-204ENST00000553605 MYO3AQ8NEV4 1616 aa23■■□□□ 1.27
PRPF39-204ENST00000553605 SUPT6HQ7KZ85 1726 aaKnown RBP23■■□□□ 1.27
PRPF39-204ENST00000553605 PHF23Q9BUL5 403 aaPredicted RBP23■■□□□ 1.27
PRPF39-204ENST00000553605 PTPRKQ15262 1439 aa22.99■■□□□ 1.27
PRPF39-204ENST00000553605 EHMT2Q96KQ7 1210 aa22.98■■□□□ 1.27
PRPF39-204ENST00000553605 CLTCQ00610 1675 aaKnown RBP22.97■■□□□ 1.27
PRPF39-204ENST00000553605 SPAG9O60271 1321 aaKnown RBP22.97■■□□□ 1.27
PRPF39-204ENST00000553605 SAMD9LQ8IVG5 1584 aa22.97■■□□□ 1.27
PRPF39-204ENST00000553605 ZNF777Q9ULD5 760 aaPredicted RBP22.96■■□□□ 1.27
PRPF39-204ENST00000553605 LRRIQ1Q96JM4 1722 aa22.96■■□□□ 1.27
PRPF39-204ENST00000553605 GGT6Q6P531 493 aa22.95■■□□□ 1.26
PRPF39-204ENST00000553605 CPS1P31327 1500 aa22.92■■□□□ 1.26
PRPF39-204ENST00000553605 HNRNPMP52272 730 aaKnown RBP eCLIP22.92■■□□□ 1.26
PRPF39-204ENST00000553605 CDC42BPAQ5VT25 1732 aa22.9■■□□□ 1.26
PRPF39-204ENST00000553605 SHANK2Q9UPX8 1470 aa22.9■■□□□ 1.26
PRPF39-204ENST00000553605 A2ML1A8K2U0 1454 aa22.89■■□□□ 1.25
PRPF39-204ENST00000553605 A2MP01023 1474 aa22.89■■□□□ 1.25
PRPF39-204ENST00000553605 DNMT1P26358 1616 aaKnown RBP22.87■■□□□ 1.25
PRPF39-204ENST00000553605 SYCP2Q9BX26 1530 aa22.87■■□□□ 1.25
PRPF39-204ENST00000553605 PLXNC1O60486 1568 aa22.86■■□□□ 1.25
PRPF39-204ENST00000553605 ATP7AQ04656 1500 aa22.86■■□□□ 1.25
PRPF39-204ENST00000553605 CCDC18Q5T9S5 1454 aa22.85■■□□□ 1.25
PRPF39-204ENST00000553605 NEURL4Q96JN8 1562 aa22.81■■□□□ 1.24
PRPF39-204ENST00000553605 GPATCH8Q9UKJ3 1502 aaKnown RBP22.81■■□□□ 1.24
PRPF39-204ENST00000553605 CASKIN1Q8WXD9 1431 aa22.81■■□□□ 1.24
PRPF39-204ENST00000553605 KIAA1107Q9UPP5 1409 aa22.81■■□□□ 1.24
PRPF39-204ENST00000553605 POLR1AO95602 1720 aaPredicted RBP22.8■■□□□ 1.24
PRPF39-204ENST00000553605 ANKLE2Q86XL3 938 aa22.8■■□□□ 1.24
PRPF39-204ENST00000553605 INO80Q9ULG1 1556 aaPredicted RBP22.8■■□□□ 1.24
PRPF39-204ENST00000553605 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
PRPF39-204ENST00000553605 ALKQ9UM73 1620 aa22.78■■□□□ 1.24
PRPF39-204ENST00000553605 FBXO31Q5XUX0 539 aaPredicted RBP22.77■■□□□ 1.24
PRPF39-204ENST00000553605 CFDP1Q9UEE9 299 aaPredicted RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms