RNA–Protein interactions for RNA: ENST00000551716.5

CACNB3-220, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 3

Gene CACNB3, Length 544 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-220ENST00000551716 SCAPERQ9BY12 1400 aa25.82■■□□□ 1.72
CACNB3-220ENST00000551716 ATP10AO60312 1499 aa25.81■■□□□ 1.72
CACNB3-220ENST00000551716 HECW1Q76N89 1606 aa25.79■■□□□ 1.72
CACNB3-220ENST00000551716 PLCH2O75038 1416 aa25.79■■□□□ 1.72
CACNB3-220ENST00000551716 EFCAB2Q5VUJ9 269 aa25.78■■□□□ 1.72
CACNB3-220ENST00000551716 ARHGEF12Q9NZN5 1544 aa25.77■■□□□ 1.72
CACNB3-220ENST00000551716 FER1L4A9Z1Z3 1794 aa25.77■■□□□ 1.72
CACNB3-220ENST00000551716 CEBPAP49715 358 aaPredicted RBP25.76■■□□□ 1.71
CACNB3-220ENST00000551716 C9orf84Q5VXU9 1444 aa25.76■■□□□ 1.71
CACNB3-220ENST00000551716 SIGLEC1Q9BZZ2 1709 aa25.73■■□□□ 1.71
CACNB3-220ENST00000551716 UHRF1BP1Q6BDS2 1440 aa25.72■■□□□ 1.71
CACNB3-220ENST00000551716 PREX1Q8TCU6 1659 aa25.72■■□□□ 1.71
CACNB3-220ENST00000551716 CDK11AQ9UQ88 783 aaPredicted RBP25.7■■□□□ 1.7
CACNB3-220ENST00000551716 PTPRTO14522 1441 aa25.68■■□□□ 1.7
CACNB3-220ENST00000551716 EEA1Q15075 1411 aa25.68■■□□□ 1.7
CACNB3-220ENST00000551716 SETD1BQ9UPS6 1966 aaKnown RBP25.65■■□□□ 1.7
CACNB3-220ENST00000551716 ESF1Q9H501 851 aaKnown RBP25.64■■□□□ 1.7
CACNB3-220ENST00000551716 MYT1LQ9UL68 1186 aa25.64■■□□□ 1.7
CACNB3-220ENST00000551716 ZNF518AQ6AHZ1 1483 aa25.63■■□□□ 1.69
CACNB3-220ENST00000551716 STRCQ7RTU9 1775 aa25.61■■□□□ 1.69
CACNB3-220ENST00000551716 AFAP1Q8N556 730 aa25.61■■□□□ 1.69
CACNB3-220ENST00000551716 ATP1B4Q9UN42 357 aaPredicted RBP25.6■■□□□ 1.69
CACNB3-220ENST00000551716 CDK13Q14004 1512 aaKnown RBP25.59■■□□□ 1.69
CACNB3-220ENST00000551716 IQSEC2Q5JU85 1478 aa25.57■■□□□ 1.68
CACNB3-220ENST00000551716 SPATA31D1Q6ZQQ2 1576 aa25.56■■□□□ 1.68
CACNB3-220ENST00000551716 TRAPPC8Q9Y2L5 1435 aa25.55■■□□□ 1.68
CACNB3-220ENST00000551716 FMN1Q68DA7 1419 aa25.53■■□□□ 1.68
CACNB3-220ENST00000551716 KDM5CP41229 1560 aa25.5■■□□□ 1.67
CACNB3-220ENST00000551716 MYO5CQ9NQX4 1742 aa25.5■■□□□ 1.67
CACNB3-220ENST00000551716 REREQ9P2R6 1566 aa25.5■■□□□ 1.67
CACNB3-220ENST00000551716 LTBP4Q8N2S1 1624 aa25.48■■□□□ 1.67
CACNB3-220ENST00000551716 ARHGAP5Q13017 1502 aa25.48■■□□□ 1.67
CACNB3-220ENST00000551716 MLH3Q9UHC1 1453 aa25.48■■□□□ 1.67
CACNB3-220ENST00000551716 CLIP1P30622 1438 aa25.47■■□□□ 1.67
CACNB3-220ENST00000551716 CNTLNQ9NXG0 1405 aa25.47■■□□□ 1.67
CACNB3-220ENST00000551716 TROQ12816 1431 aaPredicted RBP25.46■■□□□ 1.67
CACNB3-220ENST00000551716 AGLP35573 1532 aa25.45■■□□□ 1.66
CACNB3-220ENST00000551716 NCOA1Q15788 1441 aa25.45■■□□□ 1.66
CACNB3-220ENST00000551716 KIF14Q15058 1648 aa25.43■■□□□ 1.66
CACNB3-220ENST00000551716 DIP2CQ9Y2E4 1556 aa25.43■■□□□ 1.66
CACNB3-220ENST00000551716 C3P01024 1663 aa25.4■■□□□ 1.66
CACNB3-220ENST00000551716 UBTFP17480 764 aaKnown RBP25.4■■□□□ 1.66
CACNB3-220ENST00000551716 UBAP1LF5GYI3 381 aa25.39■■□□□ 1.66
CACNB3-220ENST00000551716 NPATQ14207 1427 aa25.38■■□□□ 1.65
CACNB3-220ENST00000551716 PKD2Q13563 968 aa25.35■■□□□ 1.65
CACNB3-220ENST00000551716 ABCA6Q8N139 1617 aa25.33■■□□□ 1.65
CACNB3-220ENST00000551716 ZMYM3Q14202 1370 aa25.32■■□□□ 1.64
CACNB3-220ENST00000551716 NCKAP5LQ9HCH0 1330 aa25.32■■□□□ 1.64
CACNB3-220ENST00000551716 CAMSAP1Q5T5Y3 1602 aa25.3■■□□□ 1.64
CACNB3-220ENST00000551716 ZNF335Q9H4Z2 1342 aaPredicted RBP25.3■■□□□ 1.64
CACNB3-220ENST00000551716 ARHGAP35Q9NRY4 1499 aa25.29■■□□□ 1.64
CACNB3-220ENST00000551716 ABCC1P33527 1531 aa25.26■■□□□ 1.63
CACNB3-220ENST00000551716 CDC42BPBQ9Y5S2 1711 aa25.23■■□□□ 1.63
CACNB3-220ENST00000551716 PLA2R1Q13018 1463 aa25.23■■□□□ 1.63
CACNB3-220ENST00000551716 SPAG9O60271 1321 aaKnown RBP25.23■■□□□ 1.63
CACNB3-220ENST00000551716 MROH2AA6NES4 1674 aa25.21■■□□□ 1.63
CACNB3-220ENST00000551716 EHMT2Q96KQ7 1210 aa25.21■■□□□ 1.63
CACNB3-220ENST00000551716 PPP6R1Q9UPN7 881 aa25.21■■□□□ 1.63
CACNB3-220ENST00000551716 PREX2Q70Z35 1606 aa25.2■■□□□ 1.62
CACNB3-220ENST00000551716 KIDINS220Q9ULH0 1771 aa25.2■■□□□ 1.62
CACNB3-220ENST00000551716 ZNF777Q9ULD5 760 aaPredicted RBP25.19■■□□□ 1.62
CACNB3-220ENST00000551716 CCDC18Q5T9S5 1454 aa25.18■■□□□ 1.62
CACNB3-220ENST00000551716 ITSN2Q9NZM3 1697 aa25.17■■□□□ 1.62
CACNB3-220ENST00000551716 TOM1O60784 492 aa25.17■■□□□ 1.62
CACNB3-220ENST00000551716 TCOF1Q13428 1488 aaKnown RBP25.16■■□□□ 1.62
CACNB3-220ENST00000551716 SAMD9LQ8IVG5 1584 aa25.14■■□□□ 1.61
CACNB3-220ENST00000551716 PTPRKQ15262 1439 aa25.13■■□□□ 1.61
CACNB3-220ENST00000551716 CASKIN1Q8WXD9 1431 aa25.13■■□□□ 1.61
CACNB3-220ENST00000551716 HNRNPMP52272 730 aaKnown RBP eCLIP25.13■■□□□ 1.61
CACNB3-220ENST00000551716 GGT6Q6P531 493 aa25.13■■□□□ 1.61
CACNB3-220ENST00000551716 HSPA1LP34931 641 aa25.12■■□□□ 1.61
CACNB3-220ENST00000551716 SCAF1Q9H7N4 1312 aaKnown RBP25.12■■□□□ 1.61
CACNB3-220ENST00000551716 KIAA1107Q9UPP5 1409 aa25.1■■□□□ 1.61
CACNB3-220ENST00000551716 CEP170BQ9Y4F5 1589 aaPredicted RBP25.1■■□□□ 1.61
CACNB3-220ENST00000551716 PIP4K2BP78356 416 aa25.09■■□□□ 1.61
CACNB3-220ENST00000551716 A2MP01023 1474 aa25.08■■□□□ 1.6
CACNB3-220ENST00000551716 ZNF142P52746 1687 aaPredicted RBP25.07■■□□□ 1.6
CACNB3-220ENST00000551716 PLEKHH2Q8IVE3 1493 aa25.07■■□□□ 1.6
CACNB3-220ENST00000551716 CFDP1Q9UEE9 299 aaPredicted RBP25.06■■□□□ 1.6
CACNB3-220ENST00000551716 MYO3AQ8NEV4 1616 aa25.05■■□□□ 1.6
CACNB3-220ENST00000551716 LRRIQ1Q96JM4 1722 aa25.05■■□□□ 1.6
CACNB3-220ENST00000551716 GPATCH8Q9UKJ3 1502 aaKnown RBP25.04■■□□□ 1.6
CACNB3-220ENST00000551716 SUPT6HQ7KZ85 1726 aaKnown RBP25.03■■□□□ 1.6
CACNB3-220ENST00000551716 ATP7AQ04656 1500 aa25.03■■□□□ 1.6
CACNB3-220ENST00000551716 SYCP2Q9BX26 1530 aa25.03■■□□□ 1.6
CACNB3-220ENST00000551716 CLTCQ00610 1675 aaKnown RBP25.03■■□□□ 1.6
CACNB3-220ENST00000551716 CDC42BPAQ5VT25 1732 aa25.03■■□□□ 1.6
CACNB3-220ENST00000551716 A2ML1A8K2U0 1454 aa25.02■■□□□ 1.6
CACNB3-220ENST00000551716 CPS1P31327 1500 aa25.02■■□□□ 1.6
CACNB3-220ENST00000551716 PHF23Q9BUL5 403 aaPredicted RBP25.02■■□□□ 1.6
CACNB3-220ENST00000551716 PLXNC1O60486 1568 aa25.01■■□□□ 1.59
CACNB3-220ENST00000551716 MED1Q15648 1581 aaPredicted RBP25■■□□□ 1.59
CACNB3-220ENST00000551716 ANKLE2Q86XL3 938 aa24.99■■□□□ 1.59
CACNB3-220ENST00000551716 SHANK2Q9UPX8 1470 aa24.98■■□□□ 1.59
CACNB3-220ENST00000551716 CCNB3Q8WWL7 1395 aa24.96■■□□□ 1.59
CACNB3-220ENST00000551716 THEMISQ8N1K5 641 aaPredicted RBP24.96■■□□□ 1.59
CACNB3-220ENST00000551716 FYCO1Q9BQS8 1478 aa24.96■■□□□ 1.59
CACNB3-220ENST00000551716 DNMT1P26358 1616 aaKnown RBP24.94■■□□□ 1.58
CACNB3-220ENST00000551716 INO80Q9ULG1 1556 aaPredicted RBP24.93■■□□□ 1.58
CACNB3-220ENST00000551716 TNRQ92752 1358 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms