RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 ARHGEF12Q9NZN5 1544 aa20.43■□□□□ 0.86
PTCH1-222ENST00000551425 HECW1Q76N89 1606 aa20.42■□□□□ 0.86
PTCH1-222ENST00000551425 PREX1Q8TCU6 1659 aa20.41■□□□□ 0.86
PTCH1-222ENST00000551425 ATP10AO60312 1499 aa20.38■□□□□ 0.85
PTCH1-222ENST00000551425 SPATA31D1Q6ZQQ2 1576 aa20.38■□□□□ 0.85
PTCH1-222ENST00000551425 SCAPERQ9BY12 1400 aa20.37■□□□□ 0.85
PTCH1-222ENST00000551425 C9orf84Q5VXU9 1444 aa20.36■□□□□ 0.85
PTCH1-222ENST00000551425 STRCQ7RTU9 1775 aa20.36■□□□□ 0.85
PTCH1-222ENST00000551425 CEBPAP49715 358 aaPredicted RBP20.36■□□□□ 0.85
PTCH1-222ENST00000551425 PLCH2O75038 1416 aa20.35■□□□□ 0.85
PTCH1-222ENST00000551425 CSRNP3Q8WYN3 585 aa20.34■□□□□ 0.85
PTCH1-222ENST00000551425 UHRF1BP1Q6BDS2 1440 aa20.34■□□□□ 0.85
PTCH1-222ENST00000551425 PTPRTO14522 1441 aa20.33■□□□□ 0.84
PTCH1-222ENST00000551425 IQSEC2Q5JU85 1478 aa20.27■□□□□ 0.84
PTCH1-222ENST00000551425 RANGAP1P46060 587 aaPredicted RBP20.27■□□□□ 0.84
PTCH1-222ENST00000551425 EFCAB2Q5VUJ9 269 aa20.26■□□□□ 0.83
PTCH1-222ENST00000551425 LTBP4Q8N2S1 1624 aa20.25■□□□□ 0.83
PTCH1-222ENST00000551425 SETD1BQ9UPS6 1966 aaKnown RBP20.25■□□□□ 0.83
PTCH1-222ENST00000551425 CDK13Q14004 1512 aaKnown RBP20.24■□□□□ 0.83
PTCH1-222ENST00000551425 ZNF518AQ6AHZ1 1483 aa20.23■□□□□ 0.83
PTCH1-222ENST00000551425 KDM5CP41229 1560 aa20.2■□□□□ 0.82
PTCH1-222ENST00000551425 REREQ9P2R6 1566 aa20.19■□□□□ 0.82
PTCH1-222ENST00000551425 AFAP1Q8N556 730 aa20.18■□□□□ 0.82
PTCH1-222ENST00000551425 TRAPPC8Q9Y2L5 1435 aa20.18■□□□□ 0.82
PTCH1-222ENST00000551425 NCOA1Q15788 1441 aa20.17■□□□□ 0.82
PTCH1-222ENST00000551425 MYO5CQ9NQX4 1742 aa20.16■□□□□ 0.82
PTCH1-222ENST00000551425 DIP2CQ9Y2E4 1556 aa20.16■□□□□ 0.82
PTCH1-222ENST00000551425 C3P01024 1663 aa20.16■□□□□ 0.82
PTCH1-222ENST00000551425 EEA1Q15075 1411 aa20.15■□□□□ 0.82
PTCH1-222ENST00000551425 AGLP35573 1532 aa20.13■□□□□ 0.81
PTCH1-222ENST00000551425 MLH3Q9UHC1 1453 aa20.12■□□□□ 0.81
PTCH1-222ENST00000551425 ESF1Q9H501 851 aaKnown RBP20.12■□□□□ 0.81
PTCH1-222ENST00000551425 CDK11AQ9UQ88 783 aaPredicted RBP20.12■□□□□ 0.81
PTCH1-222ENST00000551425 MYT1LQ9UL68 1186 aa20.11■□□□□ 0.81
PTCH1-222ENST00000551425 ARHGAP5Q13017 1502 aa20.11■□□□□ 0.81
PTCH1-222ENST00000551425 CNTLNQ9NXG0 1405 aa20.1■□□□□ 0.81
PTCH1-222ENST00000551425 KIF14Q15058 1648 aa20.09■□□□□ 0.81
PTCH1-222ENST00000551425 ABCA6Q8N139 1617 aa20.09■□□□□ 0.81
PTCH1-222ENST00000551425 TROQ12816 1431 aaPredicted RBP20.07■□□□□ 0.8
PTCH1-222ENST00000551425 FMN1Q68DA7 1419 aa20.07■□□□□ 0.8
PTCH1-222ENST00000551425 UBAP1LF5GYI3 381 aa20.06■□□□□ 0.8
PTCH1-222ENST00000551425 NPATQ14207 1427 aa20.06■□□□□ 0.8
PTCH1-222ENST00000551425 ATP1B4Q9UN42 357 aaPredicted RBP20.05■□□□□ 0.8
PTCH1-222ENST00000551425 CAMSAP1Q5T5Y3 1602 aa20.05■□□□□ 0.8
PTCH1-222ENST00000551425 ZNF335Q9H4Z2 1342 aaPredicted RBP20.03■□□□□ 0.8
PTCH1-222ENST00000551425 CLIP1P30622 1438 aa20.03■□□□□ 0.8
PTCH1-222ENST00000551425 NCKAP5LQ9HCH0 1330 aa20.01■□□□□ 0.79
PTCH1-222ENST00000551425 ABCC1P33527 1531 aa19.99■□□□□ 0.79
PTCH1-222ENST00000551425 ZMYM3Q14202 1370 aa19.98■□□□□ 0.79
PTCH1-222ENST00000551425 PKD2Q13563 968 aa19.98■□□□□ 0.79
PTCH1-222ENST00000551425 PLA2R1Q13018 1463 aa19.98■□□□□ 0.79
PTCH1-222ENST00000551425 MROH2AA6NES4 1674 aa19.97■□□□□ 0.79
PTCH1-222ENST00000551425 CDC42BPBQ9Y5S2 1711 aa19.97■□□□□ 0.79
PTCH1-222ENST00000551425 KIDINS220Q9ULH0 1771 aa19.95■□□□□ 0.78
PTCH1-222ENST00000551425 ARHGAP35Q9NRY4 1499 aa19.95■□□□□ 0.78
PTCH1-222ENST00000551425 TCOF1Q13428 1488 aaKnown RBP19.94■□□□□ 0.78
PTCH1-222ENST00000551425 PREX2Q70Z35 1606 aa19.94■□□□□ 0.78
PTCH1-222ENST00000551425 ITSN2Q9NZM3 1697 aa19.94■□□□□ 0.78
PTCH1-222ENST00000551425 MED1Q15648 1581 aaPredicted RBP19.91■□□□□ 0.78
PTCH1-222ENST00000551425 ZNF142P52746 1687 aaPredicted RBP19.91■□□□□ 0.78
PTCH1-222ENST00000551425 HSPA1LP34931 641 aa19.89■□□□□ 0.77
PTCH1-222ENST00000551425 MYO3AQ8NEV4 1616 aa19.89■□□□□ 0.77
PTCH1-222ENST00000551425 PPP6R1Q9UPN7 881 aa19.89■□□□□ 0.77
PTCH1-222ENST00000551425 CEP170BQ9Y4F5 1589 aaPredicted RBP19.88■□□□□ 0.77
PTCH1-222ENST00000551425 PTPRKQ15262 1439 aa19.88■□□□□ 0.77
PTCH1-222ENST00000551425 SAMD9LQ8IVG5 1584 aa19.87■□□□□ 0.77
PTCH1-222ENST00000551425 LRRIQ1Q96JM4 1722 aa19.86■□□□□ 0.77
PTCH1-222ENST00000551425 UBTFP17480 764 aaKnown RBP19.86■□□□□ 0.77
PTCH1-222ENST00000551425 SPAG9O60271 1321 aaKnown RBP19.84■□□□□ 0.77
PTCH1-222ENST00000551425 TOM1O60784 492 aa19.84■□□□□ 0.77
PTCH1-222ENST00000551425 SCAF1Q9H7N4 1312 aaKnown RBP19.82■□□□□ 0.76
PTCH1-222ENST00000551425 CLTCQ00610 1675 aaKnown RBP19.82■□□□□ 0.76
PTCH1-222ENST00000551425 PIP4K2BP78356 416 aa19.82■□□□□ 0.76
PTCH1-222ENST00000551425 PLXNC1O60486 1568 aa19.82■□□□□ 0.76
PTCH1-222ENST00000551425 CCDC18Q5T9S5 1454 aa19.81■□□□□ 0.76
PTCH1-222ENST00000551425 CPS1P31327 1500 aa19.81■□□□□ 0.76
PTCH1-222ENST00000551425 CDC42BPAQ5VT25 1732 aa19.8■□□□□ 0.76
PTCH1-222ENST00000551425 SUPT6HQ7KZ85 1726 aaKnown RBP19.8■□□□□ 0.76
PTCH1-222ENST00000551425 A2ML1A8K2U0 1454 aa19.79■□□□□ 0.76
PTCH1-222ENST00000551425 A2MP01023 1474 aa19.79■□□□□ 0.76
PTCH1-222ENST00000551425 SYCP2Q9BX26 1530 aa19.79■□□□□ 0.76
PTCH1-222ENST00000551425 CASKIN1Q8WXD9 1431 aa19.78■□□□□ 0.76
PTCH1-222ENST00000551425 ATP7AQ04656 1500 aa19.78■□□□□ 0.76
PTCH1-222ENST00000551425 ZNF777Q9ULD5 760 aaPredicted RBP19.78■□□□□ 0.76
PTCH1-222ENST00000551425 HNRNPMP52272 730 aaKnown RBP eCLIP19.77■□□□□ 0.76
PTCH1-222ENST00000551425 GGT6Q6P531 493 aa19.77■□□□□ 0.76
PTCH1-222ENST00000551425 KIAA1107Q9UPP5 1409 aa19.76■□□□□ 0.75
PTCH1-222ENST00000551425 SHANK2Q9UPX8 1470 aa19.76■□□□□ 0.75
PTCH1-222ENST00000551425 EHMT2Q96KQ7 1210 aa19.76■□□□□ 0.75
PTCH1-222ENST00000551425 DNMT1P26358 1616 aaKnown RBP19.76■□□□□ 0.75
PTCH1-222ENST00000551425 INO80Q9ULG1 1556 aaPredicted RBP19.75■□□□□ 0.75
PTCH1-222ENST00000551425 PHF23Q9BUL5 403 aaPredicted RBP19.75■□□□□ 0.75
PTCH1-222ENST00000551425 GPATCH8Q9UKJ3 1502 aaKnown RBP19.75■□□□□ 0.75
PTCH1-222ENST00000551425 NEURL4Q96JN8 1562 aa19.73■□□□□ 0.75
PTCH1-222ENST00000551425 PLEKHH2Q8IVE3 1493 aa19.73■□□□□ 0.75
PTCH1-222ENST00000551425 ALKQ9UM73 1620 aa19.69■□□□□ 0.74
PTCH1-222ENST00000551425 POLR1AO95602 1720 aaPredicted RBP19.68■□□□□ 0.74
PTCH1-222ENST00000551425 VWDEQ8N2E2 1590 aa19.67■□□□□ 0.74
PTCH1-222ENST00000551425 CFDP1Q9UEE9 299 aaPredicted RBP19.67■□□□□ 0.74
PTCH1-222ENST00000551425 TNRQ92752 1358 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms