RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 IFT140Q96RY7 1462 aa16.44■□□□□ 0.22
PTCH1-212ENST00000546744 FHOD3Q2V2M9 1422 aa16.44■□□□□ 0.22
PTCH1-212ENST00000546744 GOLGA6L6A8MZA4 724 aa16.43■□□□□ 0.22
PTCH1-212ENST00000546744 GBP4Q96PP9 640 aa16.43■□□□□ 0.22
PTCH1-212ENST00000546744 ZNF777Q9ULD5 760 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-212ENST00000546744 KIF21AQ7Z4S6 1674 aa16.43■□□□□ 0.22
PTCH1-212ENST00000546744 GRIN2BQ13224 1484 aa16.42■□□□□ 0.22
PTCH1-212ENST00000546744 CFAP53Q96M91 514 aa16.42■□□□□ 0.22
PTCH1-212ENST00000546744 KANK4Q5T7N3 995 aaPredicted RBP16.42■□□□□ 0.22
PTCH1-212ENST00000546744 HSP90AB1P08238 724 aaKnown RBP16.4■□□□□ 0.22
PTCH1-212ENST00000546744 HSP90AA2PQ14568 343 aaPredicted RBP16.4■□□□□ 0.22
PTCH1-212ENST00000546744 ZRSR1Q15695 479 aaKnown RBP16.39■□□□□ 0.21
PTCH1-212ENST00000546744 FMN1Q68DA7 1419 aa16.38■□□□□ 0.21
PTCH1-212ENST00000546744 GOLGA6L3A6NEY3 463 aa16.38■□□□□ 0.21
PTCH1-212ENST00000546744 PDE3BQ13370 1112 aa16.38■□□□□ 0.21
PTCH1-212ENST00000546744 KNSTRNQ9Y448 316 aa16.38■□□□□ 0.21
PTCH1-212ENST00000546744 SETD5Q9C0A6 1442 aa16.37■□□□□ 0.21
PTCH1-212ENST00000546744 RGS3P49796 1198 aa16.37■□□□□ 0.21
PTCH1-212ENST00000546744 FTSJ3Q8IY81 847 aaKnown RBP16.37■□□□□ 0.21
PTCH1-212ENST00000546744 CHIC2Q9UKJ5 165 aa16.37■□□□□ 0.21
PTCH1-212ENST00000546744 ARAP1Q96P48 1450 aa16.36■□□□□ 0.21
PTCH1-212ENST00000546744 ARHGAP35Q9NRY4 1499 aa16.36■□□□□ 0.21
PTCH1-212ENST00000546744 NUDCQ9Y266 331 aa16.34■□□□□ 0.21
PTCH1-212ENST00000546744 KIAA2012Q0VF49 1180 aa16.34■□□□□ 0.21
PTCH1-212ENST00000546744 CUL7Q14999 1698 aa16.34■□□□□ 0.21
PTCH1-212ENST00000546744 GSE1Q14687 1217 aa16.33■□□□□ 0.2
PTCH1-212ENST00000546744 CARD11Q9BXL7 1154 aa16.31■□□□□ 0.2
PTCH1-212ENST00000546744 RCAN3Q9UKA8 241 aa16.3■□□□□ 0.2
PTCH1-212ENST00000546744 ZNF608Q9ULD9 1512 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-212ENST00000546744 RALBP1Q15311 655 aa16.29■□□□□ 0.2
PTCH1-212ENST00000546744 KDM2AQ9Y2K7 1162 aa16.29■□□□□ 0.2
PTCH1-212ENST00000546744 SYAP1Q96A49 352 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-212ENST00000546744 SIN3AQ96ST3 1273 aa16.29■□□□□ 0.2
PTCH1-212ENST00000546744 SNAPC4Q5SXM2 1469 aa16.28■□□□□ 0.2
PTCH1-212ENST00000546744 PHLDB1Q86UU1 1377 aa16.28■□□□□ 0.2
PTCH1-212ENST00000546744 CARMIL2Q6F5E8 1435 aa16.28■□□□□ 0.2
PTCH1-212ENST00000546744 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-212ENST00000546744 JPH4Q96JJ6 628 aa16.26■□□□□ 0.19
PTCH1-212ENST00000546744 RRP7BPQ9NSQ0 103 aa16.26■□□□□ 0.19
PTCH1-212ENST00000546744 DDX11L8A8MPP1 907 aa16.25■□□□□ 0.19
PTCH1-212ENST00000546744 ROCK2O75116 1388 aaKnown RBP16.25■□□□□ 0.19
PTCH1-212ENST00000546744 HAP1P54257 671 aaPredicted RBP16.24■□□□□ 0.19
PTCH1-212ENST00000546744 PPP1R15AO75807 674 aaPredicted RBP16.24■□□□□ 0.19
PTCH1-212ENST00000546744 EFCAB5A4FU69 1503 aa16.23■□□□□ 0.19
PTCH1-212ENST00000546744 MAP7D2Q96T17 732 aa16.22■□□□□ 0.19
PTCH1-212ENST00000546744 SKOR2Q2VWA4 1001 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-212ENST00000546744 WDR62O43379 1518 aa16.22■□□□□ 0.19
PTCH1-212ENST00000546744 PLEKHD1A6NEE1 506 aa16.22■□□□□ 0.19
PTCH1-212ENST00000546744 MCCP23508 829 aa16.22■□□□□ 0.19
PTCH1-212ENST00000546744 MTERF4Q7Z6M4 381 aaKnown RBP16.21■□□□□ 0.19
PTCH1-212ENST00000546744 VSIG10Q8N0Z9 540 aa16.21■□□□□ 0.19
PTCH1-212ENST00000546744 PMFBP1Q8TBY8 1022 aa16.21■□□□□ 0.19
PTCH1-212ENST00000546744 ZBED9Q6R2W3 1325 aa16.2■□□□□ 0.18
PTCH1-212ENST00000546744 KTN1Q86UP2 1357 aaKnown RBP16.2■□□□□ 0.18
PTCH1-212ENST00000546744 RWDD1Q9H446 243 aaPredicted RBP16.2■□□□□ 0.18
PTCH1-212ENST00000546744 HSPA5P11021 654 aaKnown RBP16.19■□□□□ 0.18
PTCH1-212ENST00000546744 MAPK8IP3Q9UPT6 1336 aa16.18■□□□□ 0.18
PTCH1-212ENST00000546744 TMF1P82094 1093 aa16.18■□□□□ 0.18
PTCH1-212ENST00000546744 CASKIN1Q8WXD9 1431 aa16.17■□□□□ 0.18
PTCH1-212ENST00000546744 GOLGA6L4A6NEF3 574 aa16.16■□□□□ 0.18
PTCH1-212ENST00000546744 ABCA5Q8WWZ7 1642 aa16.16■□□□□ 0.18
PTCH1-212ENST00000546744 RAB3GAP2Q9H2M9 1393 aa16.16■□□□□ 0.18
PTCH1-212ENST00000546744 TNNT3P45378 269 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-212ENST00000546744 PLCB2Q00722 1185 aa16.16■□□□□ 0.18
PTCH1-212ENST00000546744 CENPQQ7L2Z9 268 aaPredicted RBP16.15■□□□□ 0.18
PTCH1-212ENST00000546744 MAGI1Q96QZ7 1491 aaPredicted RBP16.15■□□□□ 0.18
PTCH1-212ENST00000546744 PDE4AP27815 886 aa16.15■□□□□ 0.18
PTCH1-212ENST00000546744 PHF14O94880 888 aa16.14■□□□□ 0.17
PTCH1-212ENST00000546744 FAM161AQ3B820 660 aa16.14■□□□□ 0.17
PTCH1-212ENST00000546744 FRAT1Q92837 279 aaPredicted RBP16.14■□□□□ 0.17
PTCH1-212ENST00000546744 IPO8O15397 1037 aaKnown RBP16.14■□□□□ 0.17
PTCH1-212ENST00000546744 FYCO1Q9BQS8 1478 aa16.14■□□□□ 0.17
PTCH1-212ENST00000546744 CALD1Q05682 793 aaKnown RBP16.14■□□□□ 0.17
PTCH1-212ENST00000546744 IQGAP2Q13576 1575 aa16.13■□□□□ 0.17
PTCH1-212ENST00000546744 TARBP1Q13395 1621 aaKnown RBP16.13■□□□□ 0.17
PTCH1-212ENST00000546744 GRIN2AQ12879 1464 aa16.13■□□□□ 0.17
PTCH1-212ENST00000546744 CHGAP10645 457 aaKnown RBP16.13■□□□□ 0.17
PTCH1-212ENST00000546744 SYNJ2O15056 1496 aa16.13■□□□□ 0.17
PTCH1-212ENST00000546744 KIAA0586Q9BVV6 1533 aa16.13■□□□□ 0.17
PTCH1-212ENST00000546744 LRRC9Q6ZRR7 1453 aa16.12■□□□□ 0.17
PTCH1-212ENST00000546744 CSPP1Q1MSJ5 1256 aa16.12■□□□□ 0.17
PTCH1-212ENST00000546744 HTATSF1O43719 755 aaKnown RBP16.12■□□□□ 0.17
PTCH1-212ENST00000546744 SLKQ9H2G2 1235 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-212ENST00000546744 CFDP1Q9UEE9 299 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-212ENST00000546744 NLRP13Q86W25 1043 aa16.11■□□□□ 0.17
PTCH1-212ENST00000546744 DHX57Q6P158 1386 aaKnown RBP16.11■□□□□ 0.17
PTCH1-212ENST00000546744 NPM1P06748 294 aaKnown RBP eCLIP16.1■□□□□ 0.17
PTCH1-212ENST00000546744 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.1■□□□□ 0.17
PTCH1-212ENST00000546744 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.1■□□□□ 0.17
PTCH1-212ENST00000546744 KCNH8Q96L42 1107 aa16.1■□□□□ 0.17
PTCH1-212ENST00000546744 ADAMTS12P58397 1594 aa16.09■□□□□ 0.17
PTCH1-212ENST00000546744 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
PTCH1-212ENST00000546744 EIF4G3O43432 1585 aaKnown RBP16.08■□□□□ 0.16
PTCH1-212ENST00000546744 TIAM1Q13009 1591 aa16.08■□□□□ 0.16
PTCH1-212ENST00000546744 CTTNBP2Q8WZ74 1663 aa16.07■□□□□ 0.16
PTCH1-212ENST00000546744 PBRM1Q86U86 1689 aa16.07■□□□□ 0.16
PTCH1-212ENST00000546744 ISY1Q9ULR0 285 aaKnown RBP16.07■□□□□ 0.16
PTCH1-212ENST00000546744 PCF11O94913 1555 aaKnown RBP16.07■□□□□ 0.16
PTCH1-212ENST00000546744 PTPRGP23470 1445 aa16.06■□□□□ 0.16
PTCH1-212ENST00000546744 STAG3Q9UJ98 1225 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms