RNA–Protein interactions for RNA: ENST00000546084.5

TRAF1-203, Transcript of TNF receptor associated factor 1, humanhuman

TSL 2 BASIC

Gene TRAF1, Length 3,715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-203ENST00000546084 JPH4Q96JJ6 628 aa13.09□□□□□ -0.31
TRAF1-203ENST00000546084 PLIN1O60240 522 aa13.09□□□□□ -0.31
TRAF1-203ENST00000546084 SAFB2Q14151 953 aaKnown RBP eCLIP13.09□□□□□ -0.31
TRAF1-203ENST00000546084 LAS1LQ9Y4W2 734 aaKnown RBP13.09□□□□□ -0.31
TRAF1-203ENST00000546084 NUTM2DQ5VT03 806 aaPredicted RBP13.09□□□□□ -0.31
TRAF1-203ENST00000546084 GAPVD1Q14C86 1478 aa13.08□□□□□ -0.32
TRAF1-203ENST00000546084 POLA1P09884 1462 aaPredicted RBP13.08□□□□□ -0.32
TRAF1-203ENST00000546084 UACAQ9BZF9 1416 aa13.08□□□□□ -0.32
TRAF1-203ENST00000546084 DEKP35659 375 aaKnown RBP13.07□□□□□ -0.32
TRAF1-203ENST00000546084 PCF11O94913 1555 aaKnown RBP13.06□□□□□ -0.32
TRAF1-203ENST00000546084 NCOA2Q15596 1464 aa13.05□□□□□ -0.32
TRAF1-203ENST00000546084 PLEKHG5O94827 1062 aa13.05□□□□□ -0.32
TRAF1-203ENST00000546084 MAP3K1Q13233 1512 aa13.05□□□□□ -0.32
TRAF1-203ENST00000546084 KIF7Q2M1P5 1343 aa13.05□□□□□ -0.32
TRAF1-203ENST00000546084 NOP58Q9Y2X3 529 aaKnown RBP13.04□□□□□ -0.32
TRAF1-203ENST00000546084 HMGXB3Q12766 1538 aa13.04□□□□□ -0.32
TRAF1-203ENST00000546084 RGS3P49796 1198 aa13.04□□□□□ -0.32
TRAF1-203ENST00000546084 PTPRKQ15262 1439 aa13.04□□□□□ -0.32
TRAF1-203ENST00000546084 WDR43Q15061 677 aaKnown RBP eCLIP13.03□□□□□ -0.32
TRAF1-203ENST00000546084 ERICH6BQ5W0A0 696 aa13.03□□□□□ -0.32
TRAF1-203ENST00000546084 CASKIN1Q8WXD9 1431 aa13.03□□□□□ -0.32
TRAF1-203ENST00000546084 SKAP1Q86WV1 359 aa13.02□□□□□ -0.32
TRAF1-203ENST00000546084 RTN4Q9NQC3 1192 aaKnown RBP13.02□□□□□ -0.32
TRAF1-203ENST00000546084 ZBTB47Q9UFB7 747 aaPredicted RBP13.02□□□□□ -0.32
TRAF1-203ENST00000546084 PODXL2Q9NZ53 605 aa13.02□□□□□ -0.33
TRAF1-203ENST00000546084 HFM1A2PYH4 1435 aa13.01□□□□□ -0.33
TRAF1-203ENST00000546084 MYOM3Q5VTT5 1437 aa13.01□□□□□ -0.33
TRAF1-203ENST00000546084 TOPBP1Q92547 1522 aa13.01□□□□□ -0.33
TRAF1-203ENST00000546084 CCDC146Q8IYE0 955 aa13□□□□□ -0.33
TRAF1-203ENST00000546084 NAIPQ13075 1403 aa13□□□□□ -0.33
TRAF1-203ENST00000546084 FYCO1Q9BQS8 1478 aa13□□□□□ -0.33
TRAF1-203ENST00000546084 CDK13Q14004 1512 aaKnown RBP12.99□□□□□ -0.33
TRAF1-203ENST00000546084 ZBED9Q6R2W3 1325 aa12.99□□□□□ -0.33
TRAF1-203ENST00000546084 NBPF1Q3BBV0 1214 aa12.99□□□□□ -0.33
TRAF1-203ENST00000546084 ANO8Q9HCE9 1232 aaPredicted RBP12.98□□□□□ -0.33
TRAF1-203ENST00000546084 KNSTRNQ9Y448 316 aa12.98□□□□□ -0.33
TRAF1-203ENST00000546084 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.97□□□□□ -0.33
TRAF1-203ENST00000546084 PPM1GO15355 546 aaPredicted RBP12.97□□□□□ -0.33
TRAF1-203ENST00000546084 PAK3O75914 559 aaPredicted RBP12.97□□□□□ -0.33
TRAF1-203ENST00000546084 ROCK2O75116 1388 aaKnown RBP12.97□□□□□ -0.33
TRAF1-203ENST00000546084 CCDC7Q96M83 1385 aa12.97□□□□□ -0.33
TRAF1-203ENST00000546084 CNTLNQ9NXG0 1405 aa12.97□□□□□ -0.33
TRAF1-203ENST00000546084 PRG4Q92954 1404 aaPredicted RBP12.96□□□□□ -0.33
TRAF1-203ENST00000546084 FRAT1Q92837 279 aaPredicted RBP12.96□□□□□ -0.33
TRAF1-203ENST00000546084 CDCA7LQ96GN5 454 aa12.96□□□□□ -0.33
TRAF1-203ENST00000546084 GGT6Q6P531 493 aa12.96□□□□□ -0.33
TRAF1-203ENST00000546084 USP47Q96K76 1375 aa12.95□□□□□ -0.34
TRAF1-203ENST00000546084 EXOC6Q8TAG9 804 aa12.95□□□□□ -0.34
TRAF1-203ENST00000546084 SLC4A3P48751 1232 aa12.95□□□□□ -0.34
TRAF1-203ENST00000546084 PANK3Q9H999 370 aa12.93□□□□□ -0.34
TRAF1-203ENST00000546084 AKNAQ7Z591 1439 aa12.92□□□□□ -0.34
TRAF1-203ENST00000546084 NUDCQ9Y266 331 aa12.92□□□□□ -0.34
TRAF1-203ENST00000546084 STK26Q9P289 416 aa12.92□□□□□ -0.34
TRAF1-203ENST00000546084 STAG3Q9UJ98 1225 aa12.91□□□□□ -0.34
TRAF1-203ENST00000546084 PRDM2Q13029 1718 aa12.91□□□□□ -0.34
TRAF1-203ENST00000546084 RRP7AQ9Y3A4 280 aaKnown RBP12.91□□□□□ -0.34
TRAF1-203ENST00000546084 RCAN3Q9UKA8 241 aa12.91□□□□□ -0.34
TRAF1-203ENST00000546084 PTPN23Q9H3S7 1636 aa12.9□□□□□ -0.34
TRAF1-203ENST00000546084 ANKRD30AQ9BXX3 1397 aa12.9□□□□□ -0.34
TRAF1-203ENST00000546084 KIF3BO15066 747 aa12.9□□□□□ -0.34
TRAF1-203ENST00000546084 IPO9Q96P70 1041 aaKnown RBP12.89□□□□□ -0.35
TRAF1-203ENST00000546084 EFCAB5A4FU69 1503 aa12.88□□□□□ -0.35
TRAF1-203ENST00000546084 BCL2L13Q9BXK5 485 aa12.88□□□□□ -0.35
TRAF1-203ENST00000546084 NPM1P06748 294 aaKnown RBP eCLIP12.88□□□□□ -0.35
TRAF1-203ENST00000546084 MLECQ14165 292 aa12.88□□□□□ -0.35
TRAF1-203ENST00000546084 AFAP1Q8N556 730 aa12.88□□□□□ -0.35
TRAF1-203ENST00000546084 CFAP43Q8NDM7 1665 aa12.87□□□□□ -0.35
TRAF1-203ENST00000546084 SPRYD3Q8NCJ5 442 aa12.87□□□□□ -0.35
TRAF1-203ENST00000546084 URB2Q14146 1524 aaKnown RBP12.87□□□□□ -0.35
TRAF1-203ENST00000546084 TMF1P82094 1093 aa12.86□□□□□ -0.35
TRAF1-203ENST00000546084 CLUAP1Q96AJ1 413 aa12.86□□□□□ -0.35
TRAF1-203ENST00000546084 SOX12O15370 315 aa12.86□□□□□ -0.35
TRAF1-203ENST00000546084 ZNF608Q9ULD9 1512 aaPredicted RBP12.86□□□□□ -0.35
TRAF1-203ENST00000546084 TRAK1Q9UPV9 953 aa12.85□□□□□ -0.35
TRAF1-203ENST00000546084 U2SURPO15042 1029 aaKnown RBP12.84□□□□□ -0.35
TRAF1-203ENST00000546084 NEFMP07197 916 aa12.84□□□□□ -0.35
TRAF1-203ENST00000546084 NCOA1Q15788 1441 aa12.83□□□□□ -0.36
TRAF1-203ENST00000546084 PKNOX2Q96KN3 472 aa12.83□□□□□ -0.36
TRAF1-203ENST00000546084 PLB1Q6P1J6 1458 aa12.82□□□□□ -0.36
TRAF1-203ENST00000546084 CARMIL2Q6F5E8 1435 aa12.82□□□□□ -0.36
TRAF1-203ENST00000546084 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.82□□□□□ -0.36
TRAF1-203ENST00000546084 KTN1Q86UP2 1357 aaKnown RBP12.82□□□□□ -0.36
TRAF1-203ENST00000546084 ABCA10Q8WWZ4 1543 aa12.81□□□□□ -0.36
TRAF1-203ENST00000546084 GLIPR1L2Q4G1C9 344 aa12.81□□□□□ -0.36
TRAF1-203ENST00000546084 CRBNQ96SW2 442 aa12.81□□□□□ -0.36
TRAF1-203ENST00000546084 ANKRD50Q9ULJ7 1429 aa12.81□□□□□ -0.36
TRAF1-203ENST00000546084 KIF15Q9NS87 1388 aa12.81□□□□□ -0.36
TRAF1-203ENST00000546084 SNAPC4Q5SXM2 1469 aa12.81□□□□□ -0.36
TRAF1-203ENST00000546084 PTPRGP23470 1445 aa12.8□□□□□ -0.36
TRAF1-203ENST00000546084 NLRP13Q86W25 1043 aa12.79□□□□□ -0.36
TRAF1-203ENST00000546084 EPRSP07814 1512 aaKnown RBP12.79□□□□□ -0.36
TRAF1-203ENST00000546084 TMEM132EQ6IEE7 984 aa12.79□□□□□ -0.36
TRAF1-203ENST00000546084 ANKRD30BQ9BXX2 1392 aa12.78□□□□□ -0.36
TRAF1-203ENST00000546084 APAF1O14727 1248 aa12.78□□□□□ -0.36
TRAF1-203ENST00000546084 NUTM2FA1L443 756 aa12.78□□□□□ -0.36
TRAF1-203ENST00000546084 ADAMTS8Q9UP79 889 aa12.78□□□□□ -0.36
TRAF1-203ENST00000546084 SUPT6HQ7KZ85 1726 aaKnown RBP12.78□□□□□ -0.36
TRAF1-203ENST00000546084 EHBP1L1Q8N3D4 1523 aa12.78□□□□□ -0.36
TRAF1-203ENST00000546084 PNISRQ8TF01 805 aaKnown RBP12.78□□□□□ -0.36
TRAF1-203ENST00000546084 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms