RNA–Protein interactions for RNA: ENST00000545445.1

LTBR-214, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 379 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-214ENST00000545445 PLEKHD1A6NEE1 506 aa18.97■□□□□ 0.63
LTBR-214ENST00000545445 DISP3Q9P2K9 1392 aa18.95■□□□□ 0.62
LTBR-214ENST00000545445 CLIP1P30622 1438 aa18.95■□□□□ 0.62
LTBR-214ENST00000545445 ILDR2Q71H61 639 aa18.95■□□□□ 0.62
LTBR-214ENST00000545445 FER1L4A9Z1Z3 1794 aa18.95■□□□□ 0.62
LTBR-214ENST00000545445 HECW1Q76N89 1606 aa18.95■□□□□ 0.62
LTBR-214ENST00000545445 CEP162Q5TB80 1403 aa18.94■□□□□ 0.62
LTBR-214ENST00000545445 MAGI2Q86UL8 1455 aa18.94■□□□□ 0.62
LTBR-214ENST00000545445 ARHGAP35Q9NRY4 1499 aa18.92■□□□□ 0.62
LTBR-214ENST00000545445 ARHGEF12Q9NZN5 1544 aa18.9■□□□□ 0.62
LTBR-214ENST00000545445 SCAPERQ9BY12 1400 aa18.9■□□□□ 0.62
LTBR-214ENST00000545445 CDK13Q14004 1512 aaKnown RBP18.89■□□□□ 0.61
LTBR-214ENST00000545445 SOCS7O14512 581 aa18.88■□□□□ 0.61
LTBR-214ENST00000545445 PREX1Q8TCU6 1659 aa18.88■□□□□ 0.61
LTBR-214ENST00000545445 CEBPAP49715 358 aaPredicted RBP18.87■□□□□ 0.61
LTBR-214ENST00000545445 C9orf84Q5VXU9 1444 aa18.87■□□□□ 0.61
LTBR-214ENST00000545445 ATP10AO60312 1499 aa18.86■□□□□ 0.61
LTBR-214ENST00000545445 PLCH2O75038 1416 aa18.84■□□□□ 0.61
LTBR-214ENST00000545445 FMN1Q68DA7 1419 aa18.84■□□□□ 0.61
LTBR-214ENST00000545445 SPATA31D1Q6ZQQ2 1576 aa18.81■□□□□ 0.6
LTBR-214ENST00000545445 STRCQ7RTU9 1775 aa18.81■□□□□ 0.6
LTBR-214ENST00000545445 UHRF1BP1Q6BDS2 1440 aa18.81■□□□□ 0.6
LTBR-214ENST00000545445 DMRT2Q9Y5R5 561 aa18.79■□□□□ 0.6
LTBR-214ENST00000545445 EFCAB2Q5VUJ9 269 aa18.76■□□□□ 0.59
LTBR-214ENST00000545445 ZNF518AQ6AHZ1 1483 aa18.75■□□□□ 0.59
LTBR-214ENST00000545445 MYO5CQ9NQX4 1742 aa18.74■□□□□ 0.59
LTBR-214ENST00000545445 KDM5CP41229 1560 aa18.73■□□□□ 0.59
LTBR-214ENST00000545445 KIF14Q15058 1648 aa18.73■□□□□ 0.59
LTBR-214ENST00000545445 PTPRTO14522 1441 aa18.73■□□□□ 0.59
LTBR-214ENST00000545445 DIP2CQ9Y2E4 1556 aa18.72■□□□□ 0.59
LTBR-214ENST00000545445 AFAP1Q8N556 730 aa18.72■□□□□ 0.59
LTBR-214ENST00000545445 ATP1B4Q9UN42 357 aaPredicted RBP18.72■□□□□ 0.59
LTBR-214ENST00000545445 ARHGAP5Q13017 1502 aa18.71■□□□□ 0.59
LTBR-214ENST00000545445 VPS8Q8N3P4 1428 aa18.71■□□□□ 0.59
LTBR-214ENST00000545445 CASKIN1Q8WXD9 1431 aa18.71■□□□□ 0.59
LTBR-214ENST00000545445 MYT1LQ9UL68 1186 aa18.7■□□□□ 0.58
LTBR-214ENST00000545445 LTBP4Q8N2S1 1624 aa18.7■□□□□ 0.58
LTBR-214ENST00000545445 ABCA6Q8N139 1617 aa18.68■□□□□ 0.58
LTBR-214ENST00000545445 FYCO1Q9BQS8 1478 aa18.68■□□□□ 0.58
LTBR-214ENST00000545445 C3P01024 1663 aa18.68■□□□□ 0.58
LTBR-214ENST00000545445 REREQ9P2R6 1566 aa18.68■□□□□ 0.58
LTBR-214ENST00000545445 TROQ12816 1431 aaPredicted RBP18.66■□□□□ 0.58
LTBR-214ENST00000545445 NCOA1Q15788 1441 aa18.66■□□□□ 0.58
LTBR-214ENST00000545445 CDK11AQ9UQ88 783 aaPredicted RBP18.64■□□□□ 0.57
LTBR-214ENST00000545445 IQSEC2Q5JU85 1478 aa18.64■□□□□ 0.57
LTBR-214ENST00000545445 TRAPPC8Q9Y2L5 1435 aa18.63■□□□□ 0.57
LTBR-214ENST00000545445 MLH3Q9UHC1 1453 aa18.63■□□□□ 0.57
LTBR-214ENST00000545445 ESF1Q9H501 851 aaKnown RBP18.62■□□□□ 0.57
LTBR-214ENST00000545445 AGLP35573 1532 aa18.62■□□□□ 0.57
LTBR-214ENST00000545445 SETD1BQ9UPS6 1966 aaKnown RBP18.61■□□□□ 0.57
LTBR-214ENST00000545445 CCDC18Q5T9S5 1454 aa18.61■□□□□ 0.57
LTBR-214ENST00000545445 ABCC1P33527 1531 aa18.59■□□□□ 0.57
LTBR-214ENST00000545445 CNTLNQ9NXG0 1405 aa18.57■□□□□ 0.56
LTBR-214ENST00000545445 CAMSAP1Q5T5Y3 1602 aa18.57■□□□□ 0.56
LTBR-214ENST00000545445 CDC42BPBQ9Y5S2 1711 aa18.56■□□□□ 0.56
LTBR-214ENST00000545445 APLP2Q06481 763 aa18.55■□□□□ 0.56
LTBR-214ENST00000545445 PREX2Q70Z35 1606 aa18.55■□□□□ 0.56
LTBR-214ENST00000545445 ZNF335Q9H4Z2 1342 aaPredicted RBP18.54■□□□□ 0.56
LTBR-214ENST00000545445 ITSN2Q9NZM3 1697 aa18.54■□□□□ 0.56
LTBR-214ENST00000545445 MAP3K1Q13233 1512 aa18.54■□□□□ 0.56
LTBR-214ENST00000545445 NCKAP5LQ9HCH0 1330 aa18.53■□□□□ 0.56
LTBR-214ENST00000545445 UBAP1LF5GYI3 381 aa18.53■□□□□ 0.56
LTBR-214ENST00000545445 NPATQ14207 1427 aa18.53■□□□□ 0.56
LTBR-214ENST00000545445 LRRIQ1Q96JM4 1722 aa18.53■□□□□ 0.56
LTBR-214ENST00000545445 KIDINS220Q9ULH0 1771 aa18.53■□□□□ 0.56
LTBR-214ENST00000545445 MROH2AA6NES4 1674 aa18.48■□□□□ 0.55
LTBR-214ENST00000545445 ZMYM3Q14202 1370 aa18.48■□□□□ 0.55
LTBR-214ENST00000545445 SAMD9LQ8IVG5 1584 aa18.47■□□□□ 0.55
LTBR-214ENST00000545445 TIAM1Q13009 1591 aa18.47■□□□□ 0.55
LTBR-214ENST00000545445 MYO3AQ8NEV4 1616 aa18.46■□□□□ 0.55
LTBR-214ENST00000545445 MTUS2Q5JR59 1369 aa18.45■□□□□ 0.54
LTBR-214ENST00000545445 PLA2R1Q13018 1463 aa18.45■□□□□ 0.54
LTBR-214ENST00000545445 TCOF1Q13428 1488 aaKnown RBP18.44■□□□□ 0.54
LTBR-214ENST00000545445 ZNF142P52746 1687 aaPredicted RBP18.44■□□□□ 0.54
LTBR-214ENST00000545445 SYCP2Q9BX26 1530 aa18.44■□□□□ 0.54
LTBR-214ENST00000545445 CEP170BQ9Y4F5 1589 aaPredicted RBP18.43■□□□□ 0.54
LTBR-214ENST00000545445 ZNF777Q9ULD5 760 aaPredicted RBP18.43■□□□□ 0.54
LTBR-214ENST00000545445 CDC42BPAQ5VT25 1732 aa18.43■□□□□ 0.54
LTBR-214ENST00000545445 CLTCQ00610 1675 aaKnown RBP18.42■□□□□ 0.54
LTBR-214ENST00000545445 SPAG9O60271 1321 aaKnown RBP18.42■□□□□ 0.54
LTBR-214ENST00000545445 PTPRKQ15262 1439 aa18.41■□□□□ 0.54
LTBR-214ENST00000545445 SUPT6HQ7KZ85 1726 aaKnown RBP18.41■□□□□ 0.54
LTBR-214ENST00000545445 PKD2Q13563 968 aa18.41■□□□□ 0.54
LTBR-214ENST00000545445 LRRC9Q6ZRR7 1453 aa18.4■□□□□ 0.54
LTBR-214ENST00000545445 EHBP1L1Q8N3D4 1523 aa18.4■□□□□ 0.54
LTBR-214ENST00000545445 ATP7AQ04656 1500 aa18.39■□□□□ 0.54
LTBR-214ENST00000545445 PLXNC1O60486 1568 aa18.39■□□□□ 0.53
LTBR-214ENST00000545445 MED1Q15648 1581 aaPredicted RBP18.39■□□□□ 0.53
LTBR-214ENST00000545445 PPP6R1Q9UPN7 881 aa18.39■□□□□ 0.53
LTBR-214ENST00000545445 SCAF1Q9H7N4 1312 aaKnown RBP18.39■□□□□ 0.53
LTBR-214ENST00000545445 HNRNPMP52272 730 aaKnown RBP eCLIP18.38■□□□□ 0.53
LTBR-214ENST00000545445 HSPA1LP34931 641 aa18.37■□□□□ 0.53
LTBR-214ENST00000545445 A2MP01023 1474 aa18.37■□□□□ 0.53
LTBR-214ENST00000545445 INO80Q9ULG1 1556 aaPredicted RBP18.37■□□□□ 0.53
LTBR-214ENST00000545445 PIP4K2BP78356 416 aa18.36■□□□□ 0.53
LTBR-214ENST00000545445 KANK4Q5T7N3 995 aaPredicted RBP18.36■□□□□ 0.53
LTBR-214ENST00000545445 GPATCH8Q9UKJ3 1502 aaKnown RBP18.36■□□□□ 0.53
LTBR-214ENST00000545445 GGT6Q6P531 493 aa18.35■□□□□ 0.53
LTBR-214ENST00000545445 A2ML1A8K2U0 1454 aa18.33■□□□□ 0.52
LTBR-214ENST00000545445 KIAA1107Q9UPP5 1409 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms