RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 PHF12Q96QT6 1004 aa8.56□□□□□ -1.04
CLIP1-217ENST00000543205 BIVM-ERCC5R4GMW8 1640 aa8.56□□□□□ -1.04
CLIP1-217ENST00000543205 ATMINO43313 823 aaPredicted RBP8.54□□□□□ -1.04
CLIP1-217ENST00000543205 CDAN1Q8IWY9 1227 aa8.54□□□□□ -1.04
CLIP1-217ENST00000543205 ZNF608Q9ULD9 1512 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-217ENST00000543205 TARBP1Q13395 1621 aaKnown RBP8.53□□□□□ -1.04
CLIP1-217ENST00000543205 TDRD9Q8NDG6 1382 aaKnown RBP8.52□□□□□ -1.04
CLIP1-217ENST00000543205 PYGBP11216 843 aa8.51□□□□□ -1.05
CLIP1-217ENST00000543205 VSIG10Q8N0Z9 540 aa8.51□□□□□ -1.05
CLIP1-217ENST00000543205 AQRO60306 1485 aaKnown RBP eCLIP8.51□□□□□ -1.057e-7■■■■■ 48.1
CLIP1-217ENST00000543205 ABCA10Q8WWZ4 1543 aa8.51□□□□□ -1.05
CLIP1-217ENST00000543205 KDM2AQ9Y2K7 1162 aa8.49□□□□□ -1.05
CLIP1-217ENST00000543205 GTF3C3Q9Y5Q9 886 aa8.49□□□□□ -1.05
CLIP1-217ENST00000543205 EIF4G3O43432 1585 aaKnown RBP8.49□□□□□ -1.05
CLIP1-217ENST00000543205 HOMEZQ8IX15 550 aa8.48□□□□□ -1.05
CLIP1-217ENST00000543205 RNF25Q96BH1 459 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-217ENST00000543205 WDR97A6NE52 1622 aa8.48□□□□□ -1.05
CLIP1-217ENST00000543205 CHRM1P11229 460 aaPredicted RBP8.47□□□□□ -1.05
CLIP1-217ENST00000543205 GAPVD1Q14C86 1478 aa8.47□□□□□ -1.05
CLIP1-217ENST00000543205 RIOK3O14730 519 aaKnown RBP8.46□□□□□ -1.05
CLIP1-217ENST00000543205 CCDC61Q9Y6R9 512 aa8.46□□□□□ -1.05
CLIP1-217ENST00000543205 GRIN2BQ13224 1484 aa8.46□□□□□ -1.06
CLIP1-217ENST00000543205 KIF27Q86VH2 1401 aa8.45□□□□□ -1.06
CLIP1-217ENST00000543205 MS4A3Q96HJ5 214 aa8.45□□□□□ -1.06
CLIP1-217ENST00000543205 ABCA5Q8WWZ7 1642 aa8.44□□□□□ -1.06
CLIP1-217ENST00000543205 CHGAP10645 457 aaKnown RBP8.44□□□□□ -1.06
CLIP1-217ENST00000543205 SNAPC4Q5SXM2 1469 aa8.43□□□□□ -1.06
CLIP1-217ENST00000543205 MAGI1Q96QZ7 1491 aaPredicted RBP8.42□□□□□ -1.06
CLIP1-217ENST00000543205 CHMP7Q8WUX9 453 aaPredicted RBP8.42□□□□□ -1.06
CLIP1-217ENST00000543205 VGFO15240 615 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-217ENST00000543205 PBRM1Q86U86 1689 aa8.41□□□□□ -1.06
CLIP1-217ENST00000543205 ERICH3Q5RHP9 1530 aa8.41□□□□□ -1.06
CLIP1-217ENST00000543205 MMRN1Q13201 1228 aa8.41□□□□□ -1.06
CLIP1-217ENST00000543205 ZNF467Q7Z7K2 595 aaPredicted RBP8.4□□□□□ -1.06
CLIP1-217ENST00000543205 IGF1RP08069 1367 aa8.4□□□□□ -1.07
CLIP1-217ENST00000543205 BBXQ8WY36 941 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-217ENST00000543205 SYNJ2O15056 1496 aa8.39□□□□□ -1.07
CLIP1-217ENST00000543205 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-217ENST00000543205 FHAD1B1AJZ9 1412 aa8.38□□□□□ -1.07
CLIP1-217ENST00000543205 RUSC2Q8N2Y8 1516 aa8.38□□□□□ -1.07
CLIP1-217ENST00000543205 HS6ST3Q8IZP7 471 aa8.38□□□□□ -1.07
CLIP1-217ENST00000543205 PCDHB13Q9Y5F0 798 aa8.37□□□□□ -1.07
CLIP1-217ENST00000543205 STK25O00506 426 aa8.37□□□□□ -1.07
CLIP1-217ENST00000543205 ATN1P54259 1190 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-217ENST00000543205 PCDHB8Q9UN66 801 aa8.37□□□□□ -1.07
CLIP1-217ENST00000543205 ADAMTS12P58397 1594 aa8.36□□□□□ -1.07
CLIP1-217ENST00000543205 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-217ENST00000543205 KIF12Q96FN5 646 aa8.36□□□□□ -1.07
CLIP1-217ENST00000543205 ZFP91Q96JP5 570 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-217ENST00000543205 CARMIL1Q5VZK9 1371 aa8.36□□□□□ -1.07
CLIP1-217ENST00000543205 MAP3K13O43283 966 aa8.36□□□□□ -1.07
CLIP1-217ENST00000543205 SPNS2Q8IVW8 549 aa8.36□□□□□ -1.07
CLIP1-217ENST00000543205 FAM9AQ8IZU1 332 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-217ENST00000543205 RIMBP3CA6NJZ7 1639 aa8.35□□□□□ -1.07
CLIP1-217ENST00000543205 RIMBP3BA6NNM3 1639 aa8.35□□□□□ -1.07
CLIP1-217ENST00000543205 CHD1O14646 1710 aa8.35□□□□□ -1.07
CLIP1-217ENST00000543205 EEA1Q15075 1411 aa8.35□□□□□ -1.07
CLIP1-217ENST00000543205 RIMBP3Q9UFD9 1639 aa8.35□□□□□ -1.07
CLIP1-217ENST00000543205 SGIP1Q9BQI5 828 aa8.34□□□□□ -1.07
CLIP1-217ENST00000543205 CUL7Q14999 1698 aa8.34□□□□□ -1.07
CLIP1-217ENST00000543205 GRIN2AQ12879 1464 aa8.34□□□□□ -1.07
CLIP1-217ENST00000543205 BCL11BQ9C0K0 894 aaPredicted RBP8.34□□□□□ -1.07
CLIP1-217ENST00000543205 STK24Q9Y6E0 443 aa8.34□□□□□ -1.07
CLIP1-217ENST00000543205 PDAP1Q13442 181 aaKnown RBP8.33□□□□□ -1.08
CLIP1-217ENST00000543205 IFNL1Q8IU54 200 aa8.33□□□□□ -1.08
CLIP1-217ENST00000543205 POTEFA5A3E0 1075 aa8.32□□□□□ -1.08
CLIP1-217ENST00000543205 CYB5RLQ6IPT4 315 aa8.32□□□□□ -1.08
CLIP1-217ENST00000543205 ARHGEF11O15085 1522 aa8.32□□□□□ -1.08
CLIP1-217ENST00000543205 TMEM132AQ24JP5 1023 aa8.32□□□□□ -1.08
CLIP1-217ENST00000543205 PAXIP1Q6ZW49 1069 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-217ENST00000543205 CFAP44Q96MT7 982 aa8.32□□□□□ -1.08
CLIP1-217ENST00000543205 RAPGEF2Q9Y4G8 1499 aa8.31□□□□□ -1.08
CLIP1-217ENST00000543205 TIE1P35590 1138 aa8.3□□□□□ -1.08
CLIP1-217ENST00000543205 PSEN1P49768 467 aa8.3□□□□□ -1.08
CLIP1-217ENST00000543205 NUP160Q12769 1436 aa8.29□□□□□ -1.08
CLIP1-217ENST00000543205 ST18O60284 1047 aa8.29□□□□□ -1.08
CLIP1-217ENST00000543205 PRXQ9BXM0 1461 aa8.29□□□□□ -1.08
CLIP1-217ENST00000543205 PODXL2Q9NZ53 605 aa8.29□□□□□ -1.08
CLIP1-217ENST00000543205 SEC24BO95487 1268 aa8.28□□□□□ -1.08
CLIP1-217ENST00000543205 RANGAP1P46060 587 aaPredicted RBP8.28□□□□□ -1.08
CLIP1-217ENST00000543205 SPRYD3Q8NCJ5 442 aa8.28□□□□□ -1.08
CLIP1-217ENST00000543205 TMEM121BQ9BXQ6 578 aaPredicted RBP8.28□□□□□ -1.08
CLIP1-217ENST00000543205 CEP170Q5SW79 1584 aa8.28□□□□□ -1.08
CLIP1-217ENST00000543205 BMP2KQ9NSY1 1161 aaPredicted RBP8.27□□□□□ -1.09
CLIP1-217ENST00000543205 CLASP1Q7Z460 1538 aa8.27□□□□□ -1.09
CLIP1-217ENST00000543205 IER5LQ5T953 404 aa8.26□□□□□ -1.09
CLIP1-217ENST00000543205 NKX1-1Q15270 411 aaPredicted RBP8.25□□□□□ -1.09
CLIP1-217ENST00000543205 KIAA0586Q9BVV6 1533 aa8.25□□□□□ -1.09
CLIP1-217ENST00000543205 ERICH6Q7L0X2 663 aa8.25□□□□□ -1.09
CLIP1-217ENST00000543205 JPH4Q96JJ6 628 aa8.25□□□□□ -1.09
CLIP1-217ENST00000543205 SLAIN1Q8ND83 568 aa8.24□□□□□ -1.09
CLIP1-217ENST00000543205 UBTFP17480 764 aaKnown RBP8.23□□□□□ -1.09
CLIP1-217ENST00000543205 C14orf37Q86TY3 774 aa8.23□□□□□ -1.09
CLIP1-217ENST00000543205 KIF21BO75037 1637 aa8.23□□□□□ -1.09
CLIP1-217ENST00000543205 ARAP1Q96P48 1450 aa8.22□□□□□ -1.09
CLIP1-217ENST00000543205 SNPHO15079 494 aa8.22□□□□□ -1.09
CLIP1-217ENST00000543205 TRPC6Q9Y210 931 aa8.22□□□□□ -1.09
CLIP1-217ENST00000543205 PRG4Q92954 1404 aaPredicted RBP8.21□□□□□ -1.09
CLIP1-217ENST00000543205 GOLGA3Q08378 1498 aa8.21□□□□□ -1.09
CLIP1-217ENST00000543205 CABP2Q9NPB3 220 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms