RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 POGZQ7Z3K3 1410 aa8.33□□□□□ -1.08
LIMS1-214ENST00000542845 FRMPD1Q5SYB0 1578 aa8.32□□□□□ -1.08
LIMS1-214ENST00000542845 FER1L4A9Z1Z3 1794 aa8.32□□□□□ -1.08
LIMS1-214ENST00000542845 ABCA9Q8IUA7 1624 aa8.32□□□□□ -1.08
LIMS1-214ENST00000542845 CTTNBP2Q8WZ74 1663 aa8.31□□□□□ -1.08
LIMS1-214ENST00000542845 YEATS2Q9ULM3 1422 aa8.31□□□□□ -1.08
LIMS1-214ENST00000542845 STRCQ7RTU9 1775 aa8.31□□□□□ -1.08
LIMS1-214ENST00000542845 FANCAO15360 1455 aa8.31□□□□□ -1.08
LIMS1-214ENST00000542845 ATP10BO94823 1461 aa8.31□□□□□ -1.08
LIMS1-214ENST00000542845 GOLGA3Q08378 1498 aa8.31□□□□□ -1.08
LIMS1-214ENST00000542845 NEO1Q92859 1461 aa8.31□□□□□ -1.08
LIMS1-214ENST00000542845 PREX1Q8TCU6 1659 aa8.3□□□□□ -1.08
LIMS1-214ENST00000542845 AKNAQ7Z591 1439 aa8.29□□□□□ -1.08
LIMS1-214ENST00000542845 DENND4BO75064 1496 aaPredicted RBP8.29□□□□□ -1.08
LIMS1-214ENST00000542845 SIGLEC1Q9BZZ2 1709 aa8.29□□□□□ -1.08
LIMS1-214ENST00000542845 ARHGEF40Q8TER5 1519 aa8.29□□□□□ -1.08
LIMS1-214ENST00000542845 UBAP1LF5GYI3 381 aa8.28□□□□□ -1.08
LIMS1-214ENST00000542845 ZBTB22O15209 634 aa8.28□□□□□ -1.08
LIMS1-214ENST00000542845 RICTORQ6R327 1708 aa8.28□□□□□ -1.08
LIMS1-214ENST00000542845 RANGAP1P46060 587 aaPredicted RBP8.27□□□□□ -1.09
LIMS1-214ENST00000542845 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.27□□□□□ -1.09
LIMS1-214ENST00000542845 MYT1LQ9UL68 1186 aa8.27□□□□□ -1.09
LIMS1-214ENST00000542845 ZFYVE16Q7Z3T8 1539 aa8.26□□□□□ -1.09
LIMS1-214ENST00000542845 UHRF1BP1Q6BDS2 1440 aa8.25□□□□□ -1.09
LIMS1-214ENST00000542845 TTC37Q6PGP7 1564 aa8.25□□□□□ -1.09
LIMS1-214ENST00000542845 PLEKHD1A6NEE1 506 aa8.24□□□□□ -1.09
LIMS1-214ENST00000542845 EFCAB5A4FU69 1503 aa8.24□□□□□ -1.09
LIMS1-214ENST00000542845 PIP4K2BP78356 416 aa8.23□□□□□ -1.09
LIMS1-214ENST00000542845 ESF1Q9H501 851 aaKnown RBP8.23□□□□□ -1.09
LIMS1-214ENST00000542845 HECW1Q76N89 1606 aa8.22□□□□□ -1.09
LIMS1-214ENST00000542845 LTBP4Q8N2S1 1624 aa8.22□□□□□ -1.09
LIMS1-214ENST00000542845 PTPRTO14522 1441 aa8.22□□□□□ -1.09
LIMS1-214ENST00000542845 FHOD3Q2V2M9 1422 aa8.22□□□□□ -1.09
LIMS1-214ENST00000542845 FOXD4L1Q9NU39 408 aa8.22□□□□□ -1.09
LIMS1-214ENST00000542845 RAPGEF6Q8TEU7 1601 aa8.21□□□□□ -1.09
LIMS1-214ENST00000542845 SETD1BQ9UPS6 1966 aaKnown RBP8.21□□□□□ -1.09
LIMS1-214ENST00000542845 CFAP74Q9C0B2 1584 aa8.21□□□□□ -1.1
LIMS1-214ENST00000542845 SCAPERQ9BY12 1400 aa8.2□□□□□ -1.1
LIMS1-214ENST00000542845 ATP10AO60312 1499 aa8.2□□□□□ -1.1
LIMS1-214ENST00000542845 HSPA1LP34931 641 aa8.2□□□□□ -1.1
LIMS1-214ENST00000542845 ZNF335Q9H4Z2 1342 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-214ENST00000542845 NCKAP5LQ9HCH0 1330 aa8.2□□□□□ -1.1
LIMS1-214ENST00000542845 ARHGEF12Q9NZN5 1544 aa8.19□□□□□ -1.1
LIMS1-214ENST00000542845 IQSEC2Q5JU85 1478 aa8.19□□□□□ -1.1
LIMS1-214ENST00000542845 MAGI2Q86UL8 1455 aa8.19□□□□□ -1.1
LIMS1-214ENST00000542845 ZMYM4Q5VZL5 1548 aa8.19□□□□□ -1.1
LIMS1-214ENST00000542845 MED1Q15648 1581 aaPredicted RBP8.18□□□□□ -1.1
LIMS1-214ENST00000542845 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.18□□□□□ -1.1
LIMS1-214ENST00000542845 ATP1B4Q9UN42 357 aaPredicted RBP8.17□□□□□ -1.1
LIMS1-214ENST00000542845 C9orf84Q5VXU9 1444 aa8.17□□□□□ -1.1
LIMS1-214ENST00000542845 C3P01024 1663 aa8.17□□□□□ -1.1
LIMS1-214ENST00000542845 CAMSAP1Q5T5Y3 1602 aa8.15□□□□□ -1.1
LIMS1-214ENST00000542845 NUP153P49790 1475 aaKnown RBP8.15□□□□□ -1.1
LIMS1-214ENST00000542845 AFAP1Q8N556 730 aa8.15□□□□□ -1.1
LIMS1-214ENST00000542845 NCOA1Q15788 1441 aa8.14□□□□□ -1.11
LIMS1-214ENST00000542845 DSG3P32926 999 aa8.14□□□□□ -1.11
LIMS1-214ENST00000542845 EFCAB2Q5VUJ9 269 aa8.14□□□□□ -1.11
LIMS1-214ENST00000542845 SUPT6HQ7KZ85 1726 aaKnown RBP8.14□□□□□ -1.11
LIMS1-214ENST00000542845 TRAPPC8Q9Y2L5 1435 aa8.13□□□□□ -1.11
LIMS1-214ENST00000542845 TOM1O60784 492 aa8.13□□□□□ -1.11
LIMS1-214ENST00000542845 SAMD9Q5K651 1589 aa8.11□□□□□ -1.11
LIMS1-214ENST00000542845 PLCH2O75038 1416 aa8.11□□□□□ -1.11
LIMS1-214ENST00000542845 PRXQ9BXM0 1461 aa8.1□□□□□ -1.11
LIMS1-214ENST00000542845 MYO5CQ9NQX4 1742 aa8.09□□□□□ -1.11
LIMS1-214ENST00000542845 SPINK5Q9NQ38 1064 aaPredicted RBP8.09□□□□□ -1.11
LIMS1-214ENST00000542845 CDK13Q14004 1512 aaKnown RBP8.08□□□□□ -1.12
LIMS1-214ENST00000542845 ZNF518AQ6AHZ1 1483 aa8.08□□□□□ -1.12
LIMS1-214ENST00000542845 PKD2Q13563 968 aa8.08□□□□□ -1.12
LIMS1-214ENST00000542845 DIP2CQ9Y2E4 1556 aa8.08□□□□□ -1.12
LIMS1-214ENST00000542845 CAPN15O75808 1086 aa8.07□□□□□ -1.12
LIMS1-214ENST00000542845 ARHGAP5Q13017 1502 aa8.07□□□□□ -1.12
LIMS1-214ENST00000542845 ABCA6Q8N139 1617 aa8.07□□□□□ -1.12
LIMS1-214ENST00000542845 U3KPZ7 1027 aaPredicted RBP8.06□□□□□ -1.12
LIMS1-214ENST00000542845 ZMYM3Q14202 1370 aa8.06□□□□□ -1.12
LIMS1-214ENST00000542845 CNTLNQ9NXG0 1405 aa8.04□□□□□ -1.12
LIMS1-214ENST00000542845 GGT6Q6P531 493 aa8.04□□□□□ -1.12
LIMS1-214ENST00000542845 RGS17Q9UGC6 210 aaPredicted RBP8.04□□□□□ -1.12
LIMS1-214ENST00000542845 CDK11AQ9UQ88 783 aaPredicted RBP8.04□□□□□ -1.12
LIMS1-214ENST00000542845 CLTCQ00610 1675 aaKnown RBP8.04□□□□□ -1.12
LIMS1-214ENST00000542845 KDM5CP41229 1560 aa8.03□□□□□ -1.12
LIMS1-214ENST00000542845 ZNF777Q9ULD5 760 aaPredicted RBP8.03□□□□□ -1.12
LIMS1-214ENST00000542845 KIF14Q15058 1648 aa8.03□□□□□ -1.12
LIMS1-214ENST00000542845 AGLP35573 1532 aa8.03□□□□□ -1.12
LIMS1-214ENST00000542845 NPATQ14207 1427 aa8.03□□□□□ -1.12
LIMS1-214ENST00000542845 PLSCR2Q9NRY7 297 aa8.02□□□□□ -1.13
LIMS1-214ENST00000542845 MYO3AQ8NEV4 1616 aa8.02□□□□□ -1.13
LIMS1-214ENST00000542845 PTPRKQ15262 1439 aa8.02□□□□□ -1.13
LIMS1-214ENST00000542845 MROH2AA6NES4 1674 aa8.02□□□□□ -1.13
LIMS1-214ENST00000542845 REREQ9P2R6 1566 aa8.01□□□□□ -1.13
LIMS1-214ENST00000542845 CEP170BQ9Y4F5 1589 aaPredicted RBP8.01□□□□□ -1.13
LIMS1-214ENST00000542845 SHANK2Q9UPX8 1470 aa8.01□□□□□ -1.13
LIMS1-214ENST00000542845 POTEAQ6S8J7 498 aa8.01□□□□□ -1.13
LIMS1-214ENST00000542845 CDC42BPBQ9Y5S2 1711 aa8□□□□□ -1.13
LIMS1-214ENST00000542845 PLA2R1Q13018 1463 aa8□□□□□ -1.13
LIMS1-214ENST00000542845 TCOF1Q13428 1488 aaKnown RBP8□□□□□ -1.13
LIMS1-214ENST00000542845 MLH3Q9UHC1 1453 aa8□□□□□ -1.13
LIMS1-214ENST00000542845 CPS1P31327 1500 aa8□□□□□ -1.13
LIMS1-214ENST00000542845 ZNF142P52746 1687 aaPredicted RBP8□□□□□ -1.13
LIMS1-214ENST00000542845 KIDINS220Q9ULH0 1771 aa7.99□□□□□ -1.13
LIMS1-214ENST00000542845 POLR1AO95602 1720 aaPredicted RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms